Wall clock time and date at job start Mon Mar 30 2020 01:55:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46503 * 120.00099 * 2 1 4 4 C 1.52999 * 109.46974 * 270.00254 * 3 2 1 5 5 C 1.52997 * 109.47278 * 60.00040 * 4 3 2 6 6 C 1.53004 * 109.46638 * 179.97438 * 4 3 2 7 7 O 1.42902 * 109.47256 * 299.99369 * 4 3 2 8 8 C 1.34776 * 120.00041 * 180.02562 * 2 1 3 9 9 O 1.21615 * 119.99985 * 184.93716 * 8 2 1 10 10 C 1.47435 * 120.00093 * 4.93406 * 8 2 1 11 11 C 1.39223 * 120.28012 * 309.79131 * 10 8 2 12 12 C 1.38227 * 120.08887 * 180.28133 * 11 10 8 13 13 C 1.38828 * 120.67641 * 359.71841 * 12 11 10 14 14 C 1.37598 * 120.57078 * 0.02562 * 13 12 11 15 15 C 1.40706 * 119.87985 * 0.02562 * 14 13 12 16 16 C 1.40894 * 120.32853 * 180.02562 * 15 14 13 17 17 H 1.08000 * 120.00121 * 214.11630 * 16 15 14 18 18 C 1.40278 * 119.99876 * 34.11263 * 16 15 14 19 19 N 1.30626 * 119.99680 * 194.22230 * 18 16 15 20 20 Si 1.86805 * 119.99871 * 14.21712 * 18 16 15 21 21 H 1.48499 * 109.47261 * 267.97105 * 20 18 16 22 22 H 1.48502 * 109.47006 * 27.97578 * 20 18 16 23 23 H 1.48500 * 109.46702 * 147.97224 * 20 18 16 24 24 H 1.08998 * 109.46884 * 271.15000 * 1 2 3 25 25 H 1.08997 * 109.47156 * 31.15316 * 1 2 3 26 26 H 1.09000 * 109.47058 * 151.15209 * 1 2 3 27 27 H 1.09005 * 109.46802 * 30.00511 * 3 2 1 28 28 H 1.09006 * 109.47089 * 149.99813 * 3 2 1 29 29 H 1.09001 * 109.47359 * 59.99791 * 5 4 3 30 30 H 1.09000 * 109.46935 * 179.97438 * 5 4 3 31 31 H 1.08998 * 109.46687 * 299.99785 * 5 4 3 32 32 H 1.09001 * 109.47396 * 60.00135 * 6 4 3 33 33 H 1.09000 * 109.46890 * 179.97438 * 6 4 3 34 34 H 1.09001 * 109.47118 * 299.99670 * 6 4 3 35 35 H 0.96700 * 114.00102 * 300.00536 * 7 4 3 36 36 H 1.08000 * 119.95735 * 0.02562 * 11 10 8 37 37 H 1.07994 * 119.66071 * 179.74338 * 12 11 10 38 38 H 1.07999 * 119.71499 * 180.02562 * 13 12 11 39 39 H 1.07998 * 120.06122 * 180.02562 * 14 13 12 40 40 H 0.97006 * 119.99886 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4524 1.7104 -1.4425 5 6 1.1156 1.8934 -2.1637 6 6 3.2169 3.0358 -1.4424 7 8 3.2248 0.7146 -2.1162 8 6 2.1389 -1.1672 -0.0005 9 8 3.3516 -1.1692 0.0901 10 6 1.4058 -2.4416 -0.1109 11 6 0.3228 -2.7031 0.7240 12 6 -0.3580 -3.9017 0.6210 13 6 0.0222 -4.8541 -0.3147 14 6 1.0851 -4.6222 -1.1572 15 6 1.7956 -3.4107 -1.0721 16 6 2.8851 -3.1631 -1.9305 17 1 3.7306 -2.5907 -1.5785 18 6 2.8717 -3.6601 -3.2422 19 7 3.9727 -3.6786 -3.9448 20 14 1.2793 -4.2956 -3.9839 21 1 1.1679 -5.7561 -3.7399 22 1 0.1280 -3.5993 -3.3554 23 1 1.2764 -4.0363 -5.4461 24 1 -0.3633 0.0206 1.0275 25 1 -0.3633 0.8794 -0.5316 26 1 -0.3633 -0.9001 -0.4958 27 1 1.6084 2.0284 0.5139 28 1 3.1499 1.1384 0.5139 29 1 0.5265 2.6530 -1.6499 30 1 1.2972 2.2085 -3.1912 31 1 0.5706 0.9494 -2.1637 32 1 4.1694 2.9059 -0.9285 33 1 3.3990 3.3502 -2.4701 34 1 2.6274 3.7952 -0.9287 35 1 4.0873 0.5461 -1.7126 36 1 0.0168 -1.9703 1.4559 37 1 -1.1945 -4.0990 1.2750 38 1 -0.5210 -5.7851 -0.3820 39 1 1.3735 -5.3687 -1.8824 40 1 3.9634 -4.0219 -4.8521 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601266247.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:42 Heat of formation + Delta-G solvation = -64.349211 kcal Electronic energy + Delta-G solvation = -22808.799740 eV Core-core repulsion = 19588.391007 eV Total energy + Delta-G solvation = -3220.408733 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.61358 -37.85383 -36.61412 -34.62142 -33.56763 -31.90010 -30.48405 -30.06578 -27.66404 -26.86538 -25.79353 -24.73881 -21.96777 -21.15134 -20.05811 -18.64990 -17.38218 -16.52540 -16.45407 -15.65896 -15.33952 -14.85168 -14.48717 -14.16053 -13.96413 -13.62652 -13.21280 -12.82202 -12.63790 -12.42450 -12.24533 -12.17925 -12.00137 -11.95742 -11.79048 -11.55216 -11.29481 -11.25478 -10.84372 -10.72475 -10.49963 -10.38838 -10.02188 -9.78539 -9.71787 -9.17672 -8.65495 -7.93439 -7.73464 -7.60570 -6.91303 -4.47097 2.28140 2.63818 3.10587 3.19372 3.30053 3.58372 3.92111 3.99149 4.52747 4.63408 4.98771 5.12660 5.19824 5.37486 5.41538 5.52765 5.64770 5.71824 5.80195 5.85182 5.93062 5.99363 6.04548 6.08032 6.12005 6.22907 6.25885 6.38856 6.49167 6.58671 6.83898 7.08870 7.14679 7.30009 7.48080 7.62483 7.81563 8.05282 8.16173 8.25831 8.48267 8.65837 8.85443 9.22414 10.08846 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.016295 B = 0.008238 C = 0.006461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1717.902632 B = 3398.009545 C = 4332.366131 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.617 5.617 3 C 0.094 3.906 4 C 0.108 3.892 5 C -0.140 4.140 6 C -0.175 4.175 7 O -0.539 6.539 8 C 0.594 3.406 9 O -0.543 6.543 10 C -0.241 4.241 11 C -0.048 4.048 12 C -0.256 4.256 13 C -0.066 4.066 14 C -0.233 4.233 15 C 0.124 3.876 16 C -0.421 4.421 17 H 0.113 0.887 18 C 0.085 3.915 19 N -0.793 5.793 20 Si 0.909 3.091 21 H -0.269 1.269 22 H -0.245 1.245 23 H -0.290 1.290 24 H 0.044 0.956 25 H 0.061 0.939 26 H 0.084 0.916 27 H 0.072 0.928 28 H 0.082 0.918 29 H 0.061 0.939 30 H 0.057 0.943 31 H 0.071 0.929 32 H 0.057 0.943 33 H 0.063 0.937 34 H 0.060 0.940 35 H 0.379 0.621 36 H 0.097 0.903 37 H 0.095 0.905 38 H 0.095 0.905 39 H 0.104 0.896 40 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.962 9.486 3.706 12.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.351 5.351 3 C -0.030 4.030 4 C 0.065 3.935 5 C -0.197 4.197 6 C -0.233 4.233 7 O -0.345 6.345 8 C 0.387 3.613 9 O -0.420 6.420 10 C -0.245 4.245 11 C -0.067 4.067 12 C -0.275 4.275 13 C -0.084 4.084 14 C -0.252 4.252 15 C 0.119 3.881 16 C -0.448 4.448 17 H 0.131 0.869 18 C -0.136 4.136 19 N -0.416 5.416 20 Si 0.735 3.265 21 H -0.195 1.195 22 H -0.168 1.168 23 H -0.217 1.217 24 H 0.063 0.937 25 H 0.080 0.920 26 H 0.102 0.898 27 H 0.091 0.909 28 H 0.100 0.900 29 H 0.080 0.920 30 H 0.076 0.924 31 H 0.090 0.910 32 H 0.076 0.924 33 H 0.082 0.918 34 H 0.079 0.921 35 H 0.227 0.773 36 H 0.115 0.885 37 H 0.114 0.886 38 H 0.113 0.887 39 H 0.122 0.878 40 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -6.628 9.444 3.138 11.957 hybrid contribution -0.228 -0.245 -0.081 0.345 sum -6.856 9.199 3.057 11.873 Atomic orbital electron populations 1.21960 0.80495 1.03474 1.00644 1.47577 1.06258 1.05287 1.75946 1.22012 0.98321 0.86044 0.96607 1.21582 0.92302 0.87531 0.92070 1.21812 0.95311 1.02259 1.00295 1.22457 1.00623 0.97683 1.02555 1.86648 1.33360 1.58858 1.55599 1.18261 0.86667 0.83024 0.73338 1.90616 1.14428 1.87241 1.49721 1.19390 1.01707 0.95259 1.08172 1.20780 0.93400 0.96112 0.96359 1.20255 1.04981 0.96833 1.05423 1.20716 0.95506 0.97229 0.94981 1.21101 1.01585 0.98118 1.04386 1.17459 0.90551 0.89017 0.91044 1.19872 1.02948 1.26884 0.95090 0.86888 1.26287 0.97738 0.91990 0.97575 1.69589 1.28418 1.32889 1.10686 0.86373 0.83337 0.79817 0.76979 1.19487 1.16822 1.21714 0.93718 0.92000 0.89782 0.90939 0.90013 0.91994 0.92362 0.91032 0.92353 0.91835 0.92062 0.77346 0.88450 0.88631 0.88712 0.87786 0.90367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.15 8.05 59.85 0.48 1.63 16 2 N -0.62 -11.05 2.55 -182.84 -0.47 -11.52 16 3 C 0.09 1.42 4.73 -4.04 -0.02 1.40 16 4 C 0.11 1.61 1.17 -90.62 -0.11 1.51 16 5 C -0.14 -1.94 7.59 37.16 0.28 -1.66 16 6 C -0.18 -2.05 8.81 37.16 0.33 -1.72 16 7 O -0.54 -10.56 11.90 -37.17 -0.44 -11.01 16 8 C 0.59 13.50 6.15 -12.52 -0.08 13.43 16 9 O -0.54 -13.82 13.93 3.32 0.05 -13.77 16 10 C -0.24 -5.70 4.91 -104.37 -0.51 -6.21 16 11 C -0.05 -0.98 7.66 -39.22 -0.30 -1.28 16 12 C -0.26 -5.10 10.03 -39.37 -0.39 -5.49 16 13 C -0.07 -1.39 10.01 -39.60 -0.40 -1.79 16 14 C -0.23 -5.60 7.15 -38.88 -0.28 -5.88 16 15 C 0.12 3.21 5.05 -106.54 -0.54 2.67 16 16 C -0.42 -11.82 8.84 -37.81 -0.33 -12.16 16 17 H 0.11 3.51 6.36 -52.49 -0.33 3.17 16 18 C 0.08 2.27 5.44 -17.30 -0.09 2.18 16 19 N -0.79 -21.61 13.92 55.56 0.77 -20.84 16 20 Si 0.91 21.01 24.55 -169.99 -4.17 16.84 16 21 H -0.27 -5.96 6.65 56.52 0.38 -5.58 16 22 H -0.25 -5.75 6.92 56.52 0.39 -5.36 16 23 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 24 H 0.04 0.57 7.51 -51.93 -0.39 0.18 16 25 H 0.06 0.75 6.00 -51.93 -0.31 0.44 16 26 H 0.08 1.41 5.82 -51.93 -0.30 1.11 16 27 H 0.07 0.86 8.07 -51.93 -0.42 0.44 16 28 H 0.08 1.32 7.36 -51.93 -0.38 0.94 16 29 H 0.06 0.67 8.08 -51.93 -0.42 0.25 16 30 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.07 1.14 5.97 -51.93 -0.31 0.83 16 32 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 33 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.38 7.16 8.61 45.56 0.39 7.55 16 36 H 0.10 1.71 6.61 -52.49 -0.35 1.36 16 37 H 0.10 1.63 8.06 -52.49 -0.42 1.21 16 38 H 0.09 1.72 8.06 -52.49 -0.42 1.30 16 39 H 0.10 2.49 4.94 -52.49 -0.26 2.23 16 40 H 0.29 7.03 8.29 -40.82 -0.34 6.69 16 LS Contribution 315.43 15.07 4.75 4.75 Total: -1.00 -30.88 315.43 -6.26 -37.14 By element: Atomic # 1 Polarization: 16.57 SS G_CDS: -4.79 Total: 11.78 kcal Atomic # 6 Polarization: -11.42 SS G_CDS: -1.96 Total: -13.37 kcal Atomic # 7 Polarization: -32.67 SS G_CDS: 0.31 Total: -32.36 kcal Atomic # 8 Polarization: -24.38 SS G_CDS: -0.40 Total: -24.78 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -4.17 Total: 16.84 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -30.88 -6.26 -37.14 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601266247.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.213 kcal (2) G-P(sol) polarization free energy of solvation -30.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.136 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds