Wall clock time and date at job start Mon Mar 30 2020 01:55:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46503 * 120.00099 * 2 1 4 4 C 1.52999 * 109.46974 * 270.00254 * 3 2 1 5 5 C 1.52997 * 109.47278 * 60.00040 * 4 3 2 6 6 C 1.53004 * 109.46638 * 179.97438 * 4 3 2 7 7 O 1.42902 * 109.47256 * 299.99369 * 4 3 2 8 8 C 1.34776 * 120.00041 * 180.02562 * 2 1 3 9 9 O 1.21615 * 119.99985 * 184.93716 * 8 2 1 10 10 C 1.47435 * 120.00093 * 4.93406 * 8 2 1 11 11 C 1.39223 * 120.28012 * 309.79131 * 10 8 2 12 12 C 1.38227 * 120.08887 * 180.28133 * 11 10 8 13 13 C 1.38828 * 120.67641 * 359.71841 * 12 11 10 14 14 C 1.37598 * 120.57078 * 0.02562 * 13 12 11 15 15 C 1.40706 * 119.87985 * 0.02562 * 14 13 12 16 16 C 1.40894 * 120.32853 * 180.02562 * 15 14 13 17 17 H 1.08000 * 120.00121 * 214.11630 * 16 15 14 18 18 C 1.40278 * 119.99876 * 34.11263 * 16 15 14 19 19 N 1.30626 * 119.99680 * 194.22230 * 18 16 15 20 20 Si 1.86805 * 119.99871 * 14.21712 * 18 16 15 21 21 H 1.48499 * 109.47261 * 267.97105 * 20 18 16 22 22 H 1.48502 * 109.47006 * 27.97578 * 20 18 16 23 23 H 1.48500 * 109.46702 * 147.97224 * 20 18 16 24 24 H 1.08998 * 109.46884 * 271.15000 * 1 2 3 25 25 H 1.08997 * 109.47156 * 31.15316 * 1 2 3 26 26 H 1.09000 * 109.47058 * 151.15209 * 1 2 3 27 27 H 1.09005 * 109.46802 * 30.00511 * 3 2 1 28 28 H 1.09006 * 109.47089 * 149.99813 * 3 2 1 29 29 H 1.09001 * 109.47359 * 59.99791 * 5 4 3 30 30 H 1.09000 * 109.46935 * 179.97438 * 5 4 3 31 31 H 1.08998 * 109.46687 * 299.99785 * 5 4 3 32 32 H 1.09001 * 109.47396 * 60.00135 * 6 4 3 33 33 H 1.09000 * 109.46890 * 179.97438 * 6 4 3 34 34 H 1.09001 * 109.47118 * 299.99670 * 6 4 3 35 35 H 0.96700 * 114.00102 * 300.00536 * 7 4 3 36 36 H 1.08000 * 119.95735 * 0.02562 * 11 10 8 37 37 H 1.07994 * 119.66071 * 179.74338 * 12 11 10 38 38 H 1.07999 * 119.71499 * 180.02562 * 13 12 11 39 39 H 1.07998 * 120.06122 * 180.02562 * 14 13 12 40 40 H 0.97006 * 119.99886 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4524 1.7104 -1.4425 5 6 1.1156 1.8934 -2.1637 6 6 3.2169 3.0358 -1.4424 7 8 3.2248 0.7146 -2.1162 8 6 2.1389 -1.1672 -0.0005 9 8 3.3516 -1.1692 0.0901 10 6 1.4058 -2.4416 -0.1109 11 6 0.3228 -2.7031 0.7240 12 6 -0.3580 -3.9017 0.6210 13 6 0.0222 -4.8541 -0.3147 14 6 1.0851 -4.6222 -1.1572 15 6 1.7956 -3.4107 -1.0721 16 6 2.8851 -3.1631 -1.9305 17 1 3.7306 -2.5907 -1.5785 18 6 2.8717 -3.6601 -3.2422 19 7 3.9727 -3.6786 -3.9448 20 14 1.2793 -4.2956 -3.9839 21 1 1.1679 -5.7561 -3.7399 22 1 0.1280 -3.5993 -3.3554 23 1 1.2764 -4.0363 -5.4461 24 1 -0.3633 0.0206 1.0275 25 1 -0.3633 0.8794 -0.5316 26 1 -0.3633 -0.9001 -0.4958 27 1 1.6084 2.0284 0.5139 28 1 3.1499 1.1384 0.5139 29 1 0.5265 2.6530 -1.6499 30 1 1.2972 2.2085 -3.1912 31 1 0.5706 0.9494 -2.1637 32 1 4.1694 2.9059 -0.9285 33 1 3.3990 3.3502 -2.4701 34 1 2.6274 3.7952 -0.9287 35 1 4.0873 0.5461 -1.7126 36 1 0.0168 -1.9703 1.4559 37 1 -1.1945 -4.0990 1.2750 38 1 -0.5210 -5.7851 -0.3820 39 1 1.3735 -5.3687 -1.8824 40 1 3.9634 -4.0219 -4.8521 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601266247.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:42 Heat of formation + Delta-G solvation = -86.866227 kcal Electronic energy + Delta-G solvation = -22809.776151 eV Core-core repulsion = 19588.391007 eV Total energy + Delta-G solvation = -3221.385144 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.17223 -39.39171 -38.25344 -36.17879 -35.44362 -33.24497 -32.33142 -31.70600 -28.84696 -27.98726 -27.44953 -26.34898 -23.62633 -22.89764 -21.36223 -20.24553 -19.28671 -18.12404 -17.85612 -17.31057 -16.83725 -16.37291 -15.88634 -15.73544 -15.62432 -15.21268 -14.77467 -14.34060 -14.27783 -13.89912 -13.76486 -13.50391 -13.34733 -13.30364 -13.06874 -12.94939 -12.69237 -12.60180 -12.52016 -12.30793 -12.11622 -11.91924 -11.69659 -11.60985 -11.08624 -11.03140 -10.40404 -9.48067 -9.44862 -9.32641 -8.85796 -6.48421 0.51850 0.84835 1.22545 1.36431 1.45090 2.01079 2.11083 2.40084 2.66202 3.39525 3.50408 3.84582 3.96259 4.08277 4.15820 4.24475 4.41197 4.42464 4.51716 4.62960 4.72502 4.75199 4.81125 4.86385 4.87704 4.95655 4.97232 5.04153 5.05657 5.23229 5.31652 5.37219 5.48977 5.74271 5.78373 5.88905 6.00718 6.26704 6.43872 6.58093 6.78391 6.82377 6.86118 7.55932 8.21623 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.016295 B = 0.008238 C = 0.006461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1717.902632 B = 3398.009545 C = 4332.366131 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.610 5.610 3 C 0.092 3.908 4 C 0.095 3.905 5 C -0.137 4.137 6 C -0.165 4.165 7 O -0.574 6.574 8 C 0.583 3.417 9 O -0.587 6.587 10 C -0.254 4.254 11 C -0.046 4.046 12 C -0.229 4.229 13 C -0.066 4.066 14 C -0.252 4.252 15 C 0.102 3.898 16 C -0.463 4.463 17 H 0.061 0.939 18 C 0.043 3.957 19 N -0.846 5.846 20 Si 0.967 3.033 21 H -0.251 1.251 22 H -0.250 1.250 23 H -0.281 1.281 24 H 0.077 0.923 25 H 0.092 0.908 26 H 0.062 0.938 27 H 0.120 0.880 28 H 0.063 0.937 29 H 0.104 0.896 30 H 0.051 0.949 31 H 0.047 0.953 32 H 0.056 0.944 33 H 0.059 0.941 34 H 0.094 0.906 35 H 0.372 0.628 36 H 0.134 0.866 37 H 0.143 0.857 38 H 0.134 0.866 39 H 0.099 0.901 40 H 0.292 0.708 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.377 10.495 5.753 16.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.342 5.342 3 C -0.031 4.031 4 C 0.053 3.947 5 C -0.194 4.194 6 C -0.223 4.223 7 O -0.381 6.381 8 C 0.375 3.625 9 O -0.468 6.468 10 C -0.259 4.259 11 C -0.064 4.064 12 C -0.248 4.248 13 C -0.084 4.084 14 C -0.271 4.271 15 C 0.099 3.901 16 C -0.492 4.492 17 H 0.079 0.921 18 C -0.171 4.171 19 N -0.472 5.472 20 Si 0.789 3.211 21 H -0.176 1.176 22 H -0.174 1.174 23 H -0.208 1.208 24 H 0.095 0.905 25 H 0.110 0.890 26 H 0.081 0.919 27 H 0.138 0.862 28 H 0.082 0.918 29 H 0.123 0.877 30 H 0.071 0.929 31 H 0.066 0.934 32 H 0.075 0.925 33 H 0.078 0.922 34 H 0.113 0.887 35 H 0.219 0.781 36 H 0.152 0.848 37 H 0.160 0.840 38 H 0.152 0.848 39 H 0.117 0.883 40 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -11.090 10.483 5.200 16.122 hybrid contribution 0.953 -0.460 -0.431 1.143 sum -10.136 10.024 4.769 15.032 Atomic orbital electron populations 1.22204 0.78141 1.03954 1.02823 1.47587 1.07793 1.04816 1.73980 1.22238 0.98217 0.85684 0.96961 1.21982 0.92809 0.88015 0.91847 1.21865 0.94727 1.02258 1.00595 1.22354 1.00686 0.96389 1.02877 1.86630 1.33500 1.60969 1.56959 1.18375 0.86258 0.84430 0.73469 1.90593 1.16307 1.88031 1.51881 1.19818 1.02599 0.95573 1.07861 1.21184 0.91951 0.97382 0.95926 1.20889 1.04659 0.95280 1.03961 1.21191 0.94382 0.99078 0.93775 1.21204 1.02920 0.97339 1.05648 1.17701 0.90485 0.90387 0.91558 1.19615 1.03355 1.29285 0.96953 0.92108 1.27000 1.00627 0.92112 0.97372 1.69645 1.30163 1.35945 1.11478 0.85499 0.79138 0.80021 0.76418 1.17607 1.17373 1.20756 0.90511 0.88980 0.91908 0.86202 0.91832 0.87703 0.92938 0.93395 0.92505 0.92174 0.88678 0.78058 0.84784 0.83959 0.84838 0.88310 0.89797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.83 8.05 127.77 1.03 2.86 16 2 N -0.61 -21.11 2.55 -850.64 -2.17 -23.28 16 3 C 0.09 2.62 4.73 86.38 0.41 3.03 16 4 C 0.09 2.78 1.17 -10.79 -0.01 2.77 16 5 C -0.14 -3.55 7.59 71.98 0.55 -3.01 16 6 C -0.17 -3.59 8.81 71.98 0.63 -2.96 16 7 O -0.57 -24.17 11.90 -147.12 -1.75 -25.92 16 8 C 0.58 27.12 6.15 86.67 0.53 27.65 16 9 O -0.59 -32.02 13.93 -2.22 -0.03 -32.05 16 10 C -0.25 -12.02 4.91 -19.70 -0.10 -12.11 16 11 C -0.05 -1.72 7.66 22.50 0.17 -1.54 16 12 C -0.23 -7.91 10.03 22.41 0.22 -7.68 16 13 C -0.07 -2.53 10.01 22.26 0.22 -2.31 16 14 C -0.25 -11.94 7.15 22.72 0.16 -11.77 16 15 C 0.10 5.47 5.05 -21.11 -0.11 5.36 16 16 C -0.46 -28.11 8.84 23.42 0.21 -27.91 16 17 H 0.06 4.22 6.36 -2.91 -0.02 4.20 16 18 C 0.04 2.48 5.44 85.37 0.46 2.95 16 19 N -0.85 -49.88 13.92 21.88 0.30 -49.58 16 20 Si 0.97 44.67 24.55 68.60 1.68 46.36 16 21 H -0.25 -10.72 6.65 99.48 0.66 -10.06 16 22 H -0.25 -11.55 6.92 99.48 0.69 -10.86 16 23 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 24 H 0.08 1.53 7.51 -2.39 -0.02 1.51 16 25 H 0.09 1.84 6.00 -2.39 -0.01 1.82 16 26 H 0.06 1.92 5.82 -2.39 -0.01 1.91 16 27 H 0.12 2.28 8.07 -2.38 -0.02 2.26 16 28 H 0.06 2.07 7.36 -2.38 -0.02 2.05 16 29 H 0.10 1.77 8.08 -2.39 -0.02 1.75 16 30 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 31 H 0.05 1.46 5.97 -2.39 -0.01 1.44 16 32 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 33 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 34 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 35 H 0.37 15.83 8.61 -74.06 -0.64 15.19 16 36 H 0.13 4.00 6.61 -2.91 -0.02 3.98 16 37 H 0.14 3.72 8.06 -2.91 -0.02 3.69 16 38 H 0.13 4.10 8.06 -2.91 -0.02 4.08 16 39 H 0.10 4.71 4.94 -2.91 -0.01 4.69 16 40 H 0.29 15.42 8.29 -92.70 -0.77 14.65 16 Total: -1.00 -75.85 315.43 2.78 -73.07 By element: Atomic # 1 Polarization: 35.71 SS G_CDS: 0.36 Total: 36.07 kcal Atomic # 6 Polarization: -29.06 SS G_CDS: 4.39 Total: -24.67 kcal Atomic # 7 Polarization: -70.99 SS G_CDS: -1.87 Total: -72.86 kcal Atomic # 8 Polarization: -56.18 SS G_CDS: -1.78 Total: -57.96 kcal Atomic # 14 Polarization: 44.67 SS G_CDS: 1.68 Total: 46.36 kcal Total: -75.85 2.78 -73.07 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601266247.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.799 kcal (2) G-P(sol) polarization free energy of solvation -75.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.067 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds