Wall clock time and date at job start Mon Mar 30 2020 01:52:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52993 * 109.47529 * 2 1 4 4 C 1.53007 * 109.46816 * 120.00277 * 2 1 3 5 5 H 1.08998 * 109.46802 * 299.99678 * 4 2 1 6 6 O 1.42899 * 109.46754 * 179.97438 * 4 2 1 7 7 C 1.52995 * 109.47360 * 59.99963 * 4 2 1 8 8 N 1.46494 * 109.47394 * 184.99982 * 7 4 2 9 9 C 1.34776 * 120.00009 * 179.97438 * 8 7 4 10 10 O 1.21609 * 120.00181 * 0.02562 * 9 8 7 11 11 C 1.47435 * 119.99851 * 180.02562 * 9 8 7 12 12 C 1.39227 * 120.28510 * 356.68670 * 11 9 8 13 13 C 1.38223 * 120.09723 * 180.28291 * 12 11 9 14 14 C 1.38826 * 120.67197 * 359.69417 * 13 12 11 15 15 C 1.37607 * 120.57000 * 0.02562 * 14 13 12 16 16 C 1.40702 * 119.88222 * 0.02562 * 15 14 13 17 17 C 1.40891 * 120.32820 * 179.97438 * 16 15 14 18 18 H 1.07998 * 119.99743 * 145.79457 * 17 16 15 19 19 C 1.40273 * 119.99861 * 325.79822 * 17 16 15 20 20 N 1.30629 * 119.99711 * 340.74144 * 19 17 16 21 21 Si 1.86800 * 120.00012 * 160.74702 * 19 17 16 22 22 H 1.48505 * 109.46791 * 269.99431 * 21 19 17 23 23 H 1.48496 * 109.47300 * 29.99461 * 21 19 17 24 24 H 1.48496 * 109.47010 * 149.99877 * 21 19 17 25 25 H 1.09008 * 109.47150 * 59.99938 * 1 2 3 26 26 H 1.09004 * 109.47635 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47172 * 300.00272 * 1 2 3 28 28 H 1.08998 * 109.47172 * 239.99728 * 2 1 3 29 29 H 1.09004 * 109.47590 * 179.97438 * 3 2 1 30 30 H 1.08998 * 109.47493 * 300.00222 * 3 2 1 31 31 H 1.09003 * 109.46856 * 60.00079 * 3 2 1 32 32 H 0.96694 * 114.00419 * 300.00027 * 6 4 2 33 33 H 1.09004 * 109.47250 * 64.99839 * 7 4 2 34 34 H 1.09005 * 109.47069 * 305.00015 * 7 4 2 35 35 H 0.96994 * 119.99831 * 359.97438 * 8 7 4 36 36 H 1.08005 * 119.95480 * 359.97438 * 12 11 9 37 37 H 1.07993 * 119.66771 * 179.71616 * 13 12 11 38 38 H 1.08002 * 119.71786 * 180.02562 * 14 13 12 39 39 H 1.07995 * 120.05544 * 180.02562 * 15 14 13 40 40 H 0.97003 * 120.00596 * 354.83519 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7214 1.2493 5 1 1.6765 -0.2075 2.1392 6 8 3.4689 -0.7219 1.2490 7 6 1.5299 -2.1638 1.2493 8 7 1.9173 -2.8188 2.5010 9 6 1.5733 -4.1027 2.7243 10 8 0.9416 -4.7175 1.8866 11 6 1.9628 -4.7617 3.9844 12 6 2.7445 -4.0861 4.9176 13 6 3.1123 -4.7098 6.0950 14 6 2.7047 -6.0090 6.3656 15 6 1.9269 -6.7003 5.4652 16 6 1.5397 -6.0886 4.2587 17 6 0.7438 -6.7879 3.3299 18 1 0.0140 -6.2571 2.7367 19 6 0.8993 -8.1734 3.1759 20 7 1.9938 -8.7573 3.5854 21 14 -0.4585 -9.1836 2.3853 22 1 -1.3982 -9.6562 3.4336 23 1 -1.1926 -8.3444 1.4044 24 1 0.1357 -10.3531 1.6895 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3633 0.5139 0.8899 28 1 1.8933 -0.5139 -0.8899 29 1 3.1300 1.4424 0.0005 30 1 1.6767 1.9563 -0.8899 31 1 1.6767 1.9562 0.8900 32 1 3.8619 -1.1637 0.4840 33 1 1.9645 -2.7029 0.4074 34 1 0.4435 -2.1651 1.1596 35 1 2.4215 -2.3286 3.1690 36 1 3.0682 -3.0750 4.7191 37 1 3.7226 -4.1809 6.8120 38 1 3.0007 -6.4813 7.2906 39 1 1.6142 -7.7105 5.6843 40 1 2.7291 -8.2247 3.9269 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601321835.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:52:07 Heat of formation + Delta-G solvation = -91.133584 kcal Electronic energy + Delta-G solvation = -21435.080650 eV Core-core repulsion = 18213.510459 eV Total energy + Delta-G solvation = -3221.570190 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.32994 -38.29426 -36.81034 -34.34502 -34.13635 -33.40793 -30.25133 -29.41874 -28.18509 -27.00444 -25.20762 -23.44592 -21.96251 -20.85724 -20.78181 -19.33727 -18.11475 -16.88422 -16.46119 -15.79296 -15.03827 -14.76981 -14.54324 -14.43167 -14.03447 -13.85613 -13.71700 -13.35492 -12.99200 -12.56126 -12.40501 -12.27728 -12.12664 -12.06960 -11.67176 -11.45597 -11.13163 -11.12930 -10.89044 -10.73992 -10.68915 -10.37200 -10.14805 -10.00222 -9.58461 -9.06848 -8.49741 -8.37865 -7.77370 -7.59315 -7.13263 -4.45088 2.25558 2.74807 3.20101 3.31445 3.41899 3.80514 4.04688 4.07788 4.30565 4.56579 4.65332 4.70084 4.81899 5.14529 5.23043 5.41861 5.44986 5.48419 5.64481 5.68138 5.79892 5.84513 5.89661 5.94977 6.07875 6.11796 6.18344 6.21181 6.52112 6.73493 7.00450 7.10981 7.29541 7.51255 7.52297 7.62252 7.74003 7.90251 8.11000 8.22890 8.39670 8.74789 8.87484 9.37062 10.05407 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.018980 B = 0.004768 C = 0.003979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1474.894563 B = 5871.569553 C = 7036.065323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.124 4.124 3 C -0.142 4.142 4 C 0.100 3.900 5 H 0.102 0.898 6 O -0.558 6.558 7 C 0.092 3.908 8 N -0.744 5.744 9 C 0.563 3.437 10 O -0.540 6.540 11 C -0.266 4.266 12 C -0.043 4.043 13 C -0.259 4.259 14 C -0.075 4.075 15 C -0.202 4.202 16 C 0.121 3.879 17 C -0.468 4.468 18 H 0.105 0.895 19 C 0.031 3.969 20 N -0.795 5.795 21 Si 1.073 2.927 22 H -0.275 1.275 23 H -0.273 1.273 24 H -0.276 1.276 25 H 0.057 0.943 26 H 0.064 0.936 27 H 0.057 0.943 28 H 0.074 0.926 29 H 0.061 0.939 30 H 0.053 0.947 31 H 0.054 0.946 32 H 0.375 0.625 33 H 0.061 0.939 34 H 0.072 0.928 35 H 0.395 0.605 36 H 0.092 0.908 37 H 0.093 0.907 38 H 0.093 0.907 39 H 0.107 0.893 40 H 0.298 0.702 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.292 13.420 -4.865 14.277 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.143 4.143 3 C -0.199 4.199 4 C 0.041 3.959 5 H 0.120 0.880 6 O -0.363 6.363 7 C -0.033 4.033 8 N -0.399 5.399 9 C 0.357 3.643 10 O -0.418 6.418 11 C -0.270 4.270 12 C -0.062 4.062 13 C -0.279 4.279 14 C -0.094 4.094 15 C -0.221 4.221 16 C 0.117 3.883 17 C -0.495 4.495 18 H 0.123 0.877 19 C -0.191 4.191 20 N -0.418 5.418 21 Si 0.896 3.104 22 H -0.201 1.201 23 H -0.198 1.198 24 H -0.202 1.202 25 H 0.076 0.924 26 H 0.083 0.917 27 H 0.076 0.924 28 H 0.093 0.907 29 H 0.080 0.920 30 H 0.072 0.928 31 H 0.073 0.927 32 H 0.223 0.777 33 H 0.079 0.921 34 H 0.090 0.910 35 H 0.229 0.771 36 H 0.110 0.890 37 H 0.111 0.889 38 H 0.111 0.889 39 H 0.125 0.875 40 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -1.245 11.713 -5.319 12.924 hybrid contribution 0.924 1.595 0.324 1.871 sum -0.321 13.308 -4.995 14.218 Atomic orbital electron populations 1.21910 0.94384 1.02660 1.02052 1.21743 0.96844 0.97314 0.98440 1.21748 1.01613 0.95031 1.01507 1.22247 0.80959 0.94190 0.98553 0.88004 1.86566 1.18906 1.80938 1.49876 1.21932 1.00679 0.92246 0.88440 1.45915 1.60515 1.13639 1.19852 1.18393 0.78661 0.80010 0.87276 1.90673 1.40492 1.63435 1.47247 1.19402 1.12280 0.99255 0.96103 1.20744 0.95163 0.96667 0.93584 1.20250 1.11147 0.96832 0.99648 1.20749 0.96743 0.94404 0.97528 1.21251 1.05241 1.00584 0.95027 1.17508 0.88715 0.90424 0.91676 1.21205 1.16504 0.94408 1.17345 0.87693 1.27263 1.00622 0.96415 0.94755 1.70358 1.03801 1.42089 1.25563 0.83520 0.74320 0.75485 0.77036 1.20056 1.19791 1.20158 0.92403 0.91706 0.92388 0.90731 0.92018 0.92837 0.92716 0.77744 0.92101 0.91014 0.77052 0.89011 0.88878 0.88880 0.87541 0.88783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.38 8.85 37.15 0.33 -1.05 16 2 C -0.12 -1.13 2.69 -90.62 -0.24 -1.38 16 3 C -0.14 -1.18 9.05 37.15 0.34 -0.85 16 4 C 0.10 1.11 2.58 -26.73 -0.07 1.05 16 5 H 0.10 1.15 8.14 -51.93 -0.42 0.73 16 6 O -0.56 -6.44 12.61 -35.23 -0.44 -6.88 16 7 C 0.09 1.35 5.09 -4.05 -0.02 1.33 16 8 N -0.74 -13.40 5.45 -61.38 -0.33 -13.74 16 9 C 0.56 13.22 7.73 -12.52 -0.10 13.12 16 10 O -0.54 -14.39 13.56 5.27 0.07 -14.32 16 11 C -0.27 -6.56 5.92 -104.36 -0.62 -7.18 16 12 C -0.04 -0.92 9.53 -39.22 -0.37 -1.30 16 13 C -0.26 -5.53 10.03 -39.37 -0.39 -5.93 16 14 C -0.08 -1.69 10.01 -39.59 -0.40 -2.08 16 15 C -0.20 -5.09 7.87 -38.88 -0.31 -5.39 16 16 C 0.12 3.26 5.17 -106.54 -0.55 2.71 16 17 C -0.47 -12.98 7.65 -37.81 -0.29 -13.27 16 18 H 0.11 3.05 5.92 -52.49 -0.31 2.74 16 19 C 0.03 0.81 5.04 -17.30 -0.09 0.72 16 20 N -0.79 -21.47 12.57 55.56 0.70 -20.77 16 21 Si 1.07 22.73 29.98 -169.99 -5.10 17.63 16 22 H -0.27 -5.51 7.11 56.52 0.40 -5.10 16 23 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 24 H -0.28 -5.72 7.11 56.52 0.40 -5.32 16 25 H 0.06 0.46 8.14 -51.92 -0.42 0.03 16 26 H 0.06 0.65 6.32 -51.93 -0.33 0.32 16 27 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 28 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.06 0.53 7.68 -51.93 -0.40 0.13 16 30 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 32 H 0.38 3.34 9.04 45.56 0.41 3.76 16 33 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 34 H 0.07 1.09 6.18 -51.93 -0.32 0.77 16 35 H 0.39 6.45 6.51 -40.82 -0.27 6.19 16 36 H 0.09 1.67 6.41 -52.48 -0.34 1.34 16 37 H 0.09 1.72 8.06 -52.49 -0.42 1.30 16 38 H 0.09 1.82 8.06 -52.49 -0.42 1.40 16 39 H 0.11 2.73 6.94 -52.49 -0.36 2.37 16 40 H 0.30 8.26 6.55 -40.82 -0.27 7.99 16 LS Contribution 327.38 15.07 4.93 4.93 Total: -1.00 -30.74 327.38 -7.73 -38.48 By element: Atomic # 1 Polarization: 18.95 SS G_CDS: -4.78 Total: 14.17 kcal Atomic # 6 Polarization: -16.72 SS G_CDS: -2.78 Total: -19.50 kcal Atomic # 7 Polarization: -34.88 SS G_CDS: 0.36 Total: -34.51 kcal Atomic # 8 Polarization: -20.83 SS G_CDS: -0.37 Total: -21.20 kcal Atomic # 14 Polarization: 22.73 SS G_CDS: -5.10 Total: 17.63 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -30.74 -7.73 -38.48 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601321835.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.656 kcal (2) G-P(sol) polarization free energy of solvation -30.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.477 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds