Wall clock time and date at job start Mon Mar 30 2020 01:52:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52993 * 109.47529 * 2 1 4 4 C 1.53007 * 109.46816 * 120.00277 * 2 1 3 5 5 H 1.08998 * 109.46802 * 299.99678 * 4 2 1 6 6 O 1.42899 * 109.46754 * 179.97438 * 4 2 1 7 7 C 1.52995 * 109.47360 * 59.99963 * 4 2 1 8 8 N 1.46494 * 109.47394 * 184.99982 * 7 4 2 9 9 C 1.34776 * 120.00009 * 179.97438 * 8 7 4 10 10 O 1.21609 * 120.00181 * 0.02562 * 9 8 7 11 11 C 1.47435 * 119.99851 * 180.02562 * 9 8 7 12 12 C 1.39227 * 120.28510 * 356.68670 * 11 9 8 13 13 C 1.38223 * 120.09723 * 180.28291 * 12 11 9 14 14 C 1.38826 * 120.67197 * 359.69417 * 13 12 11 15 15 C 1.37607 * 120.57000 * 0.02562 * 14 13 12 16 16 C 1.40702 * 119.88222 * 0.02562 * 15 14 13 17 17 C 1.40891 * 120.32820 * 179.97438 * 16 15 14 18 18 H 1.07998 * 119.99743 * 145.79457 * 17 16 15 19 19 C 1.40273 * 119.99861 * 325.79822 * 17 16 15 20 20 N 1.30629 * 119.99711 * 340.74144 * 19 17 16 21 21 Si 1.86800 * 120.00012 * 160.74702 * 19 17 16 22 22 H 1.48505 * 109.46791 * 269.99431 * 21 19 17 23 23 H 1.48496 * 109.47300 * 29.99461 * 21 19 17 24 24 H 1.48496 * 109.47010 * 149.99877 * 21 19 17 25 25 H 1.09008 * 109.47150 * 59.99938 * 1 2 3 26 26 H 1.09004 * 109.47635 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47172 * 300.00272 * 1 2 3 28 28 H 1.08998 * 109.47172 * 239.99728 * 2 1 3 29 29 H 1.09004 * 109.47590 * 179.97438 * 3 2 1 30 30 H 1.08998 * 109.47493 * 300.00222 * 3 2 1 31 31 H 1.09003 * 109.46856 * 60.00079 * 3 2 1 32 32 H 0.96694 * 114.00419 * 300.00027 * 6 4 2 33 33 H 1.09004 * 109.47250 * 64.99839 * 7 4 2 34 34 H 1.09005 * 109.47069 * 305.00015 * 7 4 2 35 35 H 0.96994 * 119.99831 * 359.97438 * 8 7 4 36 36 H 1.08005 * 119.95480 * 359.97438 * 12 11 9 37 37 H 1.07993 * 119.66771 * 179.71616 * 13 12 11 38 38 H 1.08002 * 119.71786 * 180.02562 * 14 13 12 39 39 H 1.07995 * 120.05544 * 180.02562 * 15 14 13 40 40 H 0.97003 * 120.00596 * 354.83519 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7214 1.2493 5 1 1.6765 -0.2075 2.1392 6 8 3.4689 -0.7219 1.2490 7 6 1.5299 -2.1638 1.2493 8 7 1.9173 -2.8188 2.5010 9 6 1.5733 -4.1027 2.7243 10 8 0.9416 -4.7175 1.8866 11 6 1.9628 -4.7617 3.9844 12 6 2.7445 -4.0861 4.9176 13 6 3.1123 -4.7098 6.0950 14 6 2.7047 -6.0090 6.3656 15 6 1.9269 -6.7003 5.4652 16 6 1.5397 -6.0886 4.2587 17 6 0.7438 -6.7879 3.3299 18 1 0.0140 -6.2571 2.7367 19 6 0.8993 -8.1734 3.1759 20 7 1.9938 -8.7573 3.5854 21 14 -0.4585 -9.1836 2.3853 22 1 -1.3982 -9.6562 3.4336 23 1 -1.1926 -8.3444 1.4044 24 1 0.1357 -10.3531 1.6895 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3633 0.5139 0.8899 28 1 1.8933 -0.5139 -0.8899 29 1 3.1300 1.4424 0.0005 30 1 1.6767 1.9563 -0.8899 31 1 1.6767 1.9562 0.8900 32 1 3.8619 -1.1637 0.4840 33 1 1.9645 -2.7029 0.4074 34 1 0.4435 -2.1651 1.1596 35 1 2.4215 -2.3286 3.1690 36 1 3.0682 -3.0750 4.7191 37 1 3.7226 -4.1809 6.8120 38 1 3.0007 -6.4813 7.2906 39 1 1.6142 -7.7105 5.6843 40 1 2.7291 -8.2247 3.9269 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601321835.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:52:06 Heat of formation + Delta-G solvation = -112.426205 kcal Electronic energy + Delta-G solvation = -21436.003967 eV Core-core repulsion = 18213.510459 eV Total energy + Delta-G solvation = -3222.493508 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.92748 -39.55407 -38.55090 -35.97235 -35.15748 -35.04720 -32.01626 -31.27069 -29.40990 -27.80399 -27.06080 -24.79448 -23.54882 -22.68246 -21.76254 -20.91490 -19.98509 -18.33023 -17.62676 -17.08384 -16.61729 -16.33781 -16.01047 -15.83437 -15.50790 -15.38446 -15.20221 -14.79384 -14.38132 -14.00601 -13.84453 -13.60865 -13.26937 -13.10870 -12.91778 -12.84419 -12.69467 -12.50364 -12.33636 -12.06282 -11.95666 -11.84497 -11.52281 -11.48962 -10.97397 -10.91238 -10.34280 -10.01252 -9.61599 -9.50610 -9.10957 -6.47297 0.38886 0.89540 1.45657 1.61674 1.76591 2.23719 2.30451 2.37867 2.73425 3.40948 3.55178 3.62196 3.84565 3.97578 4.20041 4.23153 4.27292 4.37023 4.43573 4.60684 4.68689 4.79304 4.83590 4.87050 4.89374 4.97717 5.06218 5.13075 5.20030 5.40042 5.41939 5.42246 5.57367 5.64902 5.70687 5.88644 5.95817 6.19386 6.32525 6.66600 6.73213 6.84671 6.91555 7.58935 8.03569 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.018980 B = 0.004768 C = 0.003979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1474.894563 B = 5871.569553 C = 7036.065323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.118 4.118 3 C -0.137 4.137 4 C 0.114 3.886 5 H 0.106 0.894 6 O -0.566 6.566 7 C 0.089 3.911 8 N -0.724 5.724 9 C 0.556 3.444 10 O -0.580 6.580 11 C -0.285 4.285 12 C -0.042 4.042 13 C -0.244 4.244 14 C -0.071 4.071 15 C -0.226 4.226 16 C 0.097 3.903 17 C -0.511 4.511 18 H 0.080 0.920 19 C -0.003 4.003 20 N -0.817 5.817 21 Si 1.118 2.882 22 H -0.255 1.255 23 H -0.275 1.275 24 H -0.267 1.267 25 H 0.070 0.930 26 H 0.048 0.952 27 H 0.060 0.940 28 H 0.079 0.921 29 H 0.059 0.941 30 H 0.065 0.935 31 H 0.055 0.945 32 H 0.387 0.613 33 H 0.053 0.947 34 H 0.066 0.934 35 H 0.406 0.594 36 H 0.132 0.868 37 H 0.136 0.864 38 H 0.125 0.875 39 H 0.090 0.910 40 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.592 15.764 -4.216 16.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.137 4.137 3 C -0.195 4.195 4 C 0.055 3.945 5 H 0.124 0.876 6 O -0.373 6.373 7 C -0.035 4.035 8 N -0.378 5.378 9 C 0.349 3.651 10 O -0.462 6.462 11 C -0.290 4.290 12 C -0.061 4.061 13 C -0.263 4.263 14 C -0.090 4.090 15 C -0.245 4.245 16 C 0.092 3.908 17 C -0.539 4.539 18 H 0.098 0.902 19 C -0.218 4.218 20 N -0.441 5.441 21 Si 0.936 3.064 22 H -0.179 1.179 23 H -0.200 1.200 24 H -0.191 1.191 25 H 0.089 0.911 26 H 0.067 0.933 27 H 0.080 0.920 28 H 0.098 0.902 29 H 0.078 0.922 30 H 0.084 0.916 31 H 0.074 0.926 32 H 0.236 0.764 33 H 0.072 0.928 34 H 0.085 0.915 35 H 0.243 0.757 36 H 0.149 0.851 37 H 0.154 0.846 38 H 0.143 0.857 39 H 0.108 0.892 40 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -0.328 14.112 -4.651 14.862 hybrid contribution 0.781 1.127 0.218 1.389 sum 0.453 15.239 -4.433 15.877 Atomic orbital electron populations 1.21913 0.94318 1.01886 1.02935 1.21696 0.96814 0.97811 0.97424 1.21713 1.01444 0.94144 1.02175 1.22136 0.80927 0.91550 0.99904 0.87614 1.86541 1.18822 1.81060 1.50870 1.22175 1.00580 0.94262 0.86469 1.45700 1.59087 1.11866 1.21110 1.18444 0.78459 0.81488 0.86700 1.90653 1.42347 1.64920 1.48315 1.19829 1.12606 0.99052 0.97516 1.21146 0.93756 0.98275 0.92874 1.20811 1.09528 0.96182 0.99806 1.21164 0.95038 0.94900 0.97875 1.21218 1.07242 1.00485 0.95588 1.17900 0.88940 0.91793 0.92119 1.21128 1.18268 0.95428 1.19102 0.90183 1.28484 1.01769 0.97174 0.94351 1.70469 1.03985 1.41439 1.28256 0.82982 0.72290 0.74353 0.76796 1.17921 1.19971 1.19139 0.91071 0.93272 0.92042 0.90241 0.92202 0.91633 0.92636 0.76403 0.92828 0.91536 0.75742 0.85050 0.84593 0.85664 0.89174 0.90513 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.51 8.85 71.98 0.64 -1.87 16 2 C -0.12 -1.91 2.69 -10.80 -0.03 -1.93 16 3 C -0.14 -1.91 9.05 71.98 0.65 -1.26 16 4 C 0.11 2.32 2.58 30.60 0.08 2.39 16 5 H 0.11 2.11 8.14 -2.39 -0.02 2.09 16 6 O -0.57 -11.62 12.61 -148.98 -1.88 -13.50 16 7 C 0.09 2.55 5.09 86.38 0.44 2.99 16 8 N -0.72 -25.33 5.45 -466.37 -2.54 -27.88 16 9 C 0.56 26.48 7.73 86.67 0.67 27.15 16 10 O -0.58 -32.30 13.56 -4.06 -0.06 -32.35 16 11 C -0.29 -14.14 5.92 -19.70 -0.12 -14.25 16 12 C -0.04 -1.69 9.53 22.50 0.21 -1.48 16 13 C -0.24 -9.47 10.03 22.41 0.22 -9.25 16 14 C -0.07 -3.04 10.01 22.26 0.22 -2.82 16 15 C -0.23 -11.60 7.87 22.72 0.18 -11.42 16 16 C 0.10 5.37 5.17 -21.11 -0.11 5.26 16 17 C -0.51 -30.00 7.65 23.41 0.18 -29.82 16 18 H 0.08 4.98 5.92 -2.91 -0.02 4.96 16 19 C 0.00 -0.14 5.04 85.37 0.43 0.29 16 20 N -0.82 -46.17 12.57 21.88 0.28 -45.89 16 21 Si 1.12 47.59 29.98 68.60 2.06 49.65 16 22 H -0.25 -9.90 7.11 99.48 0.71 -9.20 16 23 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 24 H -0.27 -10.81 7.11 99.48 0.71 -10.10 16 25 H 0.07 0.98 8.14 -2.38 -0.02 0.96 16 26 H 0.05 0.96 6.32 -2.39 -0.02 0.94 16 27 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 28 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 29 H 0.06 0.87 7.68 -2.38 -0.02 0.85 16 30 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 31 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 32 H 0.39 6.02 9.04 -74.06 -0.67 5.35 16 33 H 0.05 1.63 8.14 -2.38 -0.02 1.61 16 34 H 0.07 2.02 6.18 -2.38 -0.01 2.00 16 35 H 0.41 12.25 6.51 -92.71 -0.60 11.64 16 36 H 0.13 4.21 6.41 -2.91 -0.02 4.19 16 37 H 0.14 4.19 8.06 -2.91 -0.02 4.17 16 38 H 0.13 4.50 8.06 -2.91 -0.02 4.47 16 39 H 0.09 4.83 6.94 -2.91 -0.02 4.81 16 40 H 0.28 16.46 6.55 -92.71 -0.61 15.86 16 Total: -1.00 -70.10 327.38 1.48 -68.62 By element: Atomic # 1 Polarization: 37.44 SS G_CDS: -0.05 Total: 37.39 kcal Atomic # 6 Polarization: -39.71 SS G_CDS: 3.67 Total: -36.04 kcal Atomic # 7 Polarization: -71.50 SS G_CDS: -2.27 Total: -73.77 kcal Atomic # 8 Polarization: -43.92 SS G_CDS: -1.93 Total: -45.86 kcal Atomic # 14 Polarization: 47.59 SS G_CDS: 2.06 Total: 49.65 kcal Total: -70.10 1.48 -68.62 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601321835.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.806 kcal (2) G-P(sol) polarization free energy of solvation -70.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.620 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds