Wall clock time and date at job start Mon Mar 30 2020 01:52:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52992 * 109.47173 * 2 1 4 4 C 1.53002 * 109.47268 * 120.00011 * 2 1 3 5 5 H 1.09002 * 109.46773 * 300.00214 * 4 2 1 6 6 O 1.42904 * 109.47256 * 59.99639 * 4 2 1 7 7 C 1.53000 * 109.47268 * 179.97438 * 4 2 1 8 8 N 1.46497 * 109.47087 * 179.97438 * 7 4 2 9 9 C 1.34774 * 120.00234 * 179.97438 * 8 7 4 10 10 O 1.21618 * 119.99610 * 359.97438 * 9 8 7 11 11 C 1.47428 * 120.00477 * 180.02562 * 9 8 7 12 12 C 1.39232 * 120.28208 * 357.04743 * 11 9 8 13 13 C 1.38217 * 120.09197 * 180.28466 * 12 11 9 14 14 C 1.38826 * 120.68006 * 359.71249 * 13 12 11 15 15 C 1.37600 * 120.56680 * 359.97438 * 14 13 12 16 16 C 1.40709 * 119.88058 * 0.02562 * 15 14 13 17 17 C 1.40892 * 120.32698 * 180.02562 * 16 15 14 18 18 H 1.07993 * 120.00405 * 145.84398 * 17 16 15 19 19 C 1.40277 * 119.99993 * 325.84525 * 17 16 15 20 20 N 1.30635 * 119.99643 * 340.94173 * 19 17 16 21 21 Si 1.86791 * 120.00406 * 160.94462 * 19 17 16 22 22 H 1.48498 * 109.47690 * 180.02562 * 21 19 17 23 23 H 1.48507 * 109.47328 * 300.00333 * 21 19 17 24 24 H 1.48504 * 109.47177 * 59.99546 * 21 19 17 25 25 H 1.08996 * 109.46992 * 300.00258 * 1 2 3 26 26 H 1.09002 * 109.47296 * 59.99752 * 1 2 3 27 27 H 1.08997 * 109.47147 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.46992 * 239.99742 * 2 1 3 29 29 H 1.08996 * 109.47373 * 59.99975 * 3 2 1 30 30 H 1.09008 * 109.47415 * 180.02562 * 3 2 1 31 31 H 1.09001 * 109.47387 * 299.99773 * 3 2 1 32 32 H 0.96703 * 113.99924 * 59.99938 * 6 4 2 33 33 H 1.08997 * 109.47147 * 59.99710 * 7 4 2 34 34 H 1.09003 * 109.46728 * 299.99500 * 7 4 2 35 35 H 0.97004 * 120.00040 * 0.02562 * 8 7 4 36 36 H 1.07997 * 119.94959 * 359.97438 * 12 11 9 37 37 H 1.07997 * 119.66279 * 179.73914 * 13 12 11 38 38 H 1.07994 * 119.72040 * 180.02562 * 14 13 12 39 39 H 1.07999 * 120.05892 * 180.02562 * 15 14 13 40 40 H 0.96993 * 120.00043 * 354.76364 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.6766 -0.2074 2.1392 6 8 1.5637 -2.0685 1.2493 7 6 3.5700 -0.7218 1.2489 8 7 4.0583 -1.4119 2.4454 9 6 5.3834 -1.5358 2.6582 10 8 6.1737 -1.0752 1.8568 11 6 5.8749 -2.2308 3.8620 12 6 4.9769 -2.7074 4.8133 13 6 5.4423 -3.3531 5.9433 14 6 6.8034 -3.5402 6.1423 15 6 7.7148 -3.0861 5.2168 16 6 7.2672 -2.4255 4.0579 17 6 8.1921 -1.9571 3.1038 18 1 7.9374 -1.9671 2.0544 19 6 9.4440 -1.4778 3.5171 20 7 9.6268 -1.1139 4.7583 21 14 10.8497 -1.3598 2.2926 22 1 12.0568 -0.8278 2.9744 23 1 11.1446 -2.7087 1.7460 24 1 10.4652 -0.4498 1.1838 25 1 -0.3633 0.5139 0.8899 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 1.8933 -0.5139 -0.8899 29 1 1.6767 1.9563 0.8899 30 1 3.1301 1.4425 -0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.8489 -2.5866 0.4842 33 1 3.9337 0.3057 1.2486 34 1 3.9329 -1.2360 0.3589 35 1 3.4280 -1.7802 3.0841 36 1 3.9155 -2.5678 4.6705 37 1 4.7398 -3.7163 6.6788 38 1 7.1499 -4.0473 7.0306 39 1 8.7718 -3.2364 5.3797 40 1 8.8787 -1.1028 5.3756 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601321836.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:52:10 Heat of formation + Delta-G solvation = -91.377009 kcal Electronic energy + Delta-G solvation = -21438.231068 eV Core-core repulsion = 18216.650322 eV Total energy + Delta-G solvation = -3221.580746 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.33129 -38.29186 -36.80771 -34.34628 -34.13162 -33.39905 -30.25158 -29.41581 -28.18964 -27.00420 -25.20911 -23.44009 -21.95334 -20.85382 -20.77900 -19.34187 -18.11761 -16.88281 -16.46230 -15.77842 -15.05572 -14.77924 -14.47506 -14.43857 -14.05102 -13.94165 -13.54576 -13.43503 -13.02023 -12.56523 -12.40407 -12.25804 -12.12283 -12.05235 -11.71607 -11.43551 -11.14372 -11.11197 -10.89319 -10.73834 -10.69232 -10.36250 -10.14993 -10.00536 -9.58157 -9.06782 -8.50139 -8.37708 -7.77261 -7.59054 -7.13239 -4.45059 2.25749 2.75403 3.20682 3.31625 3.41323 3.79797 4.04710 4.07994 4.31996 4.56030 4.65754 4.70287 4.81806 5.15063 5.23445 5.41781 5.45002 5.48662 5.64986 5.68886 5.80097 5.85226 5.89933 5.94504 6.08245 6.11124 6.18751 6.20871 6.52336 6.73615 7.00571 7.11079 7.29624 7.51384 7.51852 7.62258 7.74165 7.90254 8.10923 8.22677 8.40119 8.74864 8.87339 9.37209 10.05440 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.018942 B = 0.004780 C = 0.003972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1477.803750 B = 5855.915008 C = 7047.538388 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.124 4.124 3 C -0.153 4.153 4 C 0.100 3.900 5 H 0.102 0.898 6 O -0.557 6.557 7 C 0.092 3.908 8 N -0.744 5.744 9 C 0.563 3.437 10 O -0.540 6.540 11 C -0.266 4.266 12 C -0.042 4.042 13 C -0.259 4.259 14 C -0.075 4.075 15 C -0.202 4.202 16 C 0.121 3.879 17 C -0.467 4.467 18 H 0.105 0.895 19 C 0.031 3.969 20 N -0.794 5.794 21 Si 1.071 2.929 22 H -0.275 1.275 23 H -0.274 1.274 24 H -0.273 1.273 25 H 0.054 0.946 26 H 0.052 0.948 27 H 0.061 0.939 28 H 0.074 0.926 29 H 0.057 0.943 30 H 0.064 0.936 31 H 0.057 0.943 32 H 0.375 0.625 33 H 0.071 0.929 34 H 0.061 0.939 35 H 0.395 0.605 36 H 0.092 0.908 37 H 0.093 0.907 38 H 0.093 0.907 39 H 0.107 0.893 40 H 0.298 0.702 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.536 1.521 -6.531 14.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.143 4.143 3 C -0.210 4.210 4 C 0.040 3.960 5 H 0.120 0.880 6 O -0.363 6.363 7 C -0.032 4.032 8 N -0.399 5.399 9 C 0.357 3.643 10 O -0.419 6.419 11 C -0.271 4.271 12 C -0.061 4.061 13 C -0.279 4.279 14 C -0.094 4.094 15 C -0.221 4.221 16 C 0.117 3.883 17 C -0.494 4.494 18 H 0.123 0.877 19 C -0.191 4.191 20 N -0.418 5.418 21 Si 0.894 3.106 22 H -0.199 1.199 23 H -0.200 1.200 24 H -0.198 1.198 25 H 0.073 0.927 26 H 0.072 0.928 27 H 0.080 0.920 28 H 0.093 0.907 29 H 0.076 0.924 30 H 0.083 0.917 31 H 0.076 0.924 32 H 0.222 0.778 33 H 0.089 0.911 34 H 0.079 0.921 35 H 0.230 0.770 36 H 0.110 0.890 37 H 0.111 0.889 38 H 0.111 0.889 39 H 0.125 0.875 40 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -10.608 2.477 -6.653 12.764 hybrid contribution -1.830 -0.686 0.112 1.957 sum -12.438 1.791 -6.541 14.166 Atomic orbital electron populations 1.21748 0.94380 1.02263 1.01510 1.21747 0.96866 0.97297 0.98412 1.21899 1.01858 0.95190 1.02054 1.22252 0.92008 0.83135 0.98555 0.88018 1.86567 1.76665 1.23168 1.49850 1.21904 0.93363 0.98401 0.89580 1.45903 1.07786 1.61219 1.25005 1.18393 0.80612 0.79016 0.86316 1.90672 1.54484 1.49504 1.47244 1.19398 0.94550 1.14601 0.98508 1.20741 0.96461 0.95283 0.93657 1.20249 0.94884 1.12457 1.00287 1.20745 0.93492 0.97926 0.97264 1.21253 0.98389 1.04795 0.97660 1.17502 0.90672 0.88932 0.91206 1.21175 0.98087 1.32392 0.97781 0.87739 1.27267 1.00973 0.92116 0.98695 1.70386 1.37617 1.28878 1.04898 0.83555 0.74319 0.78021 0.74713 1.19937 1.19969 1.19837 0.92716 0.92842 0.92020 0.90742 0.92387 0.91730 0.92406 0.77754 0.91091 0.92118 0.76969 0.89018 0.88881 0.88878 0.87526 0.88811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.18 9.05 37.16 0.34 -0.84 16 2 C -0.12 -1.13 2.69 -90.62 -0.24 -1.38 16 3 C -0.15 -1.39 8.84 37.15 0.33 -1.06 16 4 C 0.10 1.11 2.63 -26.73 -0.07 1.04 16 5 H 0.10 1.16 8.14 -51.93 -0.42 0.73 16 6 O -0.56 -6.35 12.41 -35.23 -0.44 -6.79 16 7 C 0.09 1.35 4.98 -4.04 -0.02 1.33 16 8 N -0.74 -13.39 5.40 -61.38 -0.33 -13.72 16 9 C 0.56 13.21 7.73 -12.52 -0.10 13.12 16 10 O -0.54 -14.39 13.55 5.26 0.07 -14.32 16 11 C -0.27 -6.57 5.92 -104.37 -0.62 -7.19 16 12 C -0.04 -0.92 9.53 -39.22 -0.37 -1.29 16 13 C -0.26 -5.54 10.03 -39.37 -0.39 -5.93 16 14 C -0.08 -1.69 10.01 -39.60 -0.40 -2.09 16 15 C -0.20 -5.09 7.86 -38.88 -0.31 -5.39 16 16 C 0.12 3.27 5.18 -106.54 -0.55 2.72 16 17 C -0.47 -12.98 7.66 -37.81 -0.29 -13.27 16 18 H 0.10 3.03 5.91 -52.49 -0.31 2.72 16 19 C 0.03 0.81 5.04 -17.29 -0.09 0.73 16 20 N -0.79 -21.45 12.57 55.56 0.70 -20.75 16 21 Si 1.07 22.67 29.98 -169.99 -5.10 17.58 16 22 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 23 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 24 H -0.27 -5.69 7.11 56.52 0.40 -5.28 16 25 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.06 0.53 7.68 -51.93 -0.40 0.13 16 28 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.06 0.66 6.43 -51.92 -0.33 0.32 16 31 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.38 3.29 9.05 45.56 0.41 3.70 16 33 H 0.07 1.09 6.43 -51.93 -0.33 0.76 16 34 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 35 H 0.40 6.48 6.39 -40.82 -0.26 6.22 16 36 H 0.09 1.67 6.41 -52.49 -0.34 1.34 16 37 H 0.09 1.72 8.06 -52.49 -0.42 1.30 16 38 H 0.09 1.82 8.06 -52.49 -0.42 1.40 16 39 H 0.11 2.73 6.93 -52.49 -0.36 2.37 16 40 H 0.30 8.24 6.54 -40.82 -0.27 7.97 16 LS Contribution 327.25 15.07 4.93 4.93 Total: -1.00 -30.69 327.25 -7.74 -38.43 By element: Atomic # 1 Polarization: 18.95 SS G_CDS: -4.79 Total: 14.15 kcal Atomic # 6 Polarization: -16.72 SS G_CDS: -2.78 Total: -19.51 kcal Atomic # 7 Polarization: -34.84 SS G_CDS: 0.37 Total: -34.48 kcal Atomic # 8 Polarization: -20.75 SS G_CDS: -0.37 Total: -21.11 kcal Atomic # 14 Polarization: 22.67 SS G_CDS: -5.10 Total: 17.58 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -30.69 -7.74 -38.43 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601321836.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.948 kcal (2) G-P(sol) polarization free energy of solvation -30.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.429 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds