Wall clock time and date at job start Mon Mar 30 2020 01:52:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52992 * 109.47173 * 2 1 4 4 C 1.53002 * 109.47268 * 120.00011 * 2 1 3 5 5 H 1.09002 * 109.46773 * 300.00214 * 4 2 1 6 6 O 1.42904 * 109.47256 * 59.99639 * 4 2 1 7 7 C 1.53000 * 109.47268 * 179.97438 * 4 2 1 8 8 N 1.46497 * 109.47087 * 179.97438 * 7 4 2 9 9 C 1.34774 * 120.00234 * 179.97438 * 8 7 4 10 10 O 1.21618 * 119.99610 * 359.97438 * 9 8 7 11 11 C 1.47428 * 120.00477 * 180.02562 * 9 8 7 12 12 C 1.39232 * 120.28208 * 357.04743 * 11 9 8 13 13 C 1.38217 * 120.09197 * 180.28466 * 12 11 9 14 14 C 1.38826 * 120.68006 * 359.71249 * 13 12 11 15 15 C 1.37600 * 120.56680 * 359.97438 * 14 13 12 16 16 C 1.40709 * 119.88058 * 0.02562 * 15 14 13 17 17 C 1.40892 * 120.32698 * 180.02562 * 16 15 14 18 18 H 1.07993 * 120.00405 * 145.84398 * 17 16 15 19 19 C 1.40277 * 119.99993 * 325.84525 * 17 16 15 20 20 N 1.30635 * 119.99643 * 340.94173 * 19 17 16 21 21 Si 1.86791 * 120.00406 * 160.94462 * 19 17 16 22 22 H 1.48498 * 109.47690 * 180.02562 * 21 19 17 23 23 H 1.48507 * 109.47328 * 300.00333 * 21 19 17 24 24 H 1.48504 * 109.47177 * 59.99546 * 21 19 17 25 25 H 1.08996 * 109.46992 * 300.00258 * 1 2 3 26 26 H 1.09002 * 109.47296 * 59.99752 * 1 2 3 27 27 H 1.08997 * 109.47147 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.46992 * 239.99742 * 2 1 3 29 29 H 1.08996 * 109.47373 * 59.99975 * 3 2 1 30 30 H 1.09008 * 109.47415 * 180.02562 * 3 2 1 31 31 H 1.09001 * 109.47387 * 299.99773 * 3 2 1 32 32 H 0.96703 * 113.99924 * 59.99938 * 6 4 2 33 33 H 1.08997 * 109.47147 * 59.99710 * 7 4 2 34 34 H 1.09003 * 109.46728 * 299.99500 * 7 4 2 35 35 H 0.97004 * 120.00040 * 0.02562 * 8 7 4 36 36 H 1.07997 * 119.94959 * 359.97438 * 12 11 9 37 37 H 1.07997 * 119.66279 * 179.73914 * 13 12 11 38 38 H 1.07994 * 119.72040 * 180.02562 * 14 13 12 39 39 H 1.07999 * 120.05892 * 180.02562 * 15 14 13 40 40 H 0.96993 * 120.00043 * 354.76364 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.6766 -0.2074 2.1392 6 8 1.5637 -2.0685 1.2493 7 6 3.5700 -0.7218 1.2489 8 7 4.0583 -1.4119 2.4454 9 6 5.3834 -1.5358 2.6582 10 8 6.1737 -1.0752 1.8568 11 6 5.8749 -2.2308 3.8620 12 6 4.9769 -2.7074 4.8133 13 6 5.4423 -3.3531 5.9433 14 6 6.8034 -3.5402 6.1423 15 6 7.7148 -3.0861 5.2168 16 6 7.2672 -2.4255 4.0579 17 6 8.1921 -1.9571 3.1038 18 1 7.9374 -1.9671 2.0544 19 6 9.4440 -1.4778 3.5171 20 7 9.6268 -1.1139 4.7583 21 14 10.8497 -1.3598 2.2926 22 1 12.0568 -0.8278 2.9744 23 1 11.1446 -2.7087 1.7460 24 1 10.4652 -0.4498 1.1838 25 1 -0.3633 0.5139 0.8899 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 1.8933 -0.5139 -0.8899 29 1 1.6767 1.9563 0.8899 30 1 3.1301 1.4425 -0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.8489 -2.5866 0.4842 33 1 3.9337 0.3057 1.2486 34 1 3.9329 -1.2360 0.3589 35 1 3.4280 -1.7802 3.0841 36 1 3.9155 -2.5678 4.6705 37 1 4.7398 -3.7163 6.6788 38 1 7.1499 -4.0473 7.0306 39 1 8.7718 -3.2364 5.3797 40 1 8.8787 -1.1028 5.3756 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601321836.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:52:09 Heat of formation + Delta-G solvation = -112.543056 kcal Electronic energy + Delta-G solvation = -21439.148897 eV Core-core repulsion = 18216.650322 eV Total energy + Delta-G solvation = -3222.498575 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.92595 -39.55232 -38.54651 -35.96996 -35.14821 -35.03984 -32.01574 -31.26700 -29.41460 -27.80431 -27.06203 -24.79243 -23.53637 -22.67744 -21.75158 -20.92542 -19.98716 -18.32610 -17.63739 -17.03146 -16.62970 -16.36583 -16.02725 -15.72150 -15.57826 -15.46359 -15.08355 -14.78204 -14.44446 -14.00786 -13.77958 -13.63816 -13.28870 -13.11034 -12.92401 -12.84746 -12.69875 -12.50593 -12.32413 -12.02574 -11.95622 -11.84584 -11.53133 -11.48934 -10.98309 -10.89652 -10.35082 -10.01131 -9.61570 -9.50316 -9.10805 -6.47164 0.39084 0.89917 1.46193 1.61633 1.76576 2.23902 2.30756 2.37600 2.73849 3.42323 3.55520 3.61802 3.84387 3.97790 4.20285 4.23636 4.27656 4.36990 4.43714 4.61353 4.68447 4.79358 4.83999 4.87325 4.89401 4.97422 5.06103 5.13221 5.19572 5.40052 5.42016 5.42214 5.57392 5.65025 5.70798 5.88775 5.95851 6.19313 6.32583 6.66817 6.73657 6.84945 6.91812 7.59217 8.03747 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.018942 B = 0.004780 C = 0.003972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1477.803750 B = 5855.915008 C = 7047.538388 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.118 4.118 3 C -0.153 4.153 4 C 0.115 3.885 5 H 0.105 0.895 6 O -0.565 6.565 7 C 0.090 3.910 8 N -0.723 5.723 9 C 0.556 3.444 10 O -0.581 6.581 11 C -0.285 4.285 12 C -0.042 4.042 13 C -0.245 4.245 14 C -0.071 4.071 15 C -0.226 4.226 16 C 0.096 3.904 17 C -0.511 4.511 18 H 0.081 0.919 19 C -0.003 4.003 20 N -0.817 5.817 21 Si 1.116 2.884 22 H -0.264 1.264 23 H -0.259 1.259 24 H -0.271 1.271 25 H 0.054 0.946 26 H 0.065 0.935 27 H 0.059 0.941 28 H 0.080 0.920 29 H 0.060 0.940 30 H 0.048 0.952 31 H 0.070 0.930 32 H 0.387 0.613 33 H 0.063 0.937 34 H 0.056 0.944 35 H 0.406 0.594 36 H 0.132 0.868 37 H 0.136 0.864 38 H 0.125 0.875 39 H 0.090 0.910 40 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.082 0.955 -6.217 16.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.137 4.137 3 C -0.211 4.211 4 C 0.055 3.945 5 H 0.123 0.877 6 O -0.372 6.372 7 C -0.034 4.034 8 N -0.377 5.377 9 C 0.349 3.651 10 O -0.463 6.463 11 C -0.290 4.290 12 C -0.060 4.060 13 C -0.263 4.263 14 C -0.090 4.090 15 C -0.245 4.245 16 C 0.092 3.908 17 C -0.539 4.539 18 H 0.099 0.901 19 C -0.218 4.218 20 N -0.441 5.441 21 Si 0.933 3.067 22 H -0.188 1.188 23 H -0.184 1.184 24 H -0.197 1.197 25 H 0.073 0.927 26 H 0.084 0.916 27 H 0.079 0.921 28 H 0.098 0.902 29 H 0.079 0.921 30 H 0.067 0.933 31 H 0.089 0.911 32 H 0.236 0.764 33 H 0.081 0.919 34 H 0.074 0.926 35 H 0.243 0.757 36 H 0.149 0.851 37 H 0.154 0.846 38 H 0.143 0.857 39 H 0.108 0.892 40 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -13.218 1.890 -6.330 14.777 hybrid contribution -1.327 -0.588 0.092 1.454 sum -14.545 1.302 -6.237 15.879 Atomic orbital electron populations 1.21713 0.93240 1.02376 1.02146 1.21699 0.97616 0.96959 0.97436 1.21905 1.00823 0.95438 1.02902 1.22131 0.88925 0.83590 0.99854 0.87742 1.86543 1.76517 1.23266 1.50850 1.22142 0.96078 0.97369 0.87819 1.45684 1.06003 1.60087 1.25964 1.18440 0.82118 0.78763 0.85764 1.90652 1.56049 1.51128 1.48430 1.19826 0.94564 1.14752 0.99872 1.21143 0.98038 0.94112 0.92747 1.20809 0.95041 1.10070 1.00422 1.21160 0.93825 0.96636 0.97364 1.21222 0.98368 1.06367 0.98592 1.17897 0.91952 0.89017 0.91895 1.21112 0.99973 1.35908 0.96926 0.90125 1.28489 1.02883 0.90796 0.99624 1.70498 1.36719 1.31502 1.05409 0.83019 0.72009 0.78800 0.72832 1.18794 1.18351 1.19651 0.92695 0.91645 0.92143 0.90171 0.92112 0.93327 0.91073 0.76383 0.91885 0.92585 0.75687 0.85060 0.84601 0.85670 0.89164 0.90529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.91 9.05 71.98 0.65 -1.26 16 2 C -0.12 -1.90 2.69 -10.80 -0.03 -1.92 16 3 C -0.15 -2.54 8.84 71.98 0.64 -1.90 16 4 C 0.11 2.31 2.63 30.59 0.08 2.39 16 5 H 0.10 2.10 8.14 -2.39 -0.02 2.09 16 6 O -0.56 -11.38 12.41 -148.98 -1.85 -13.22 16 7 C 0.09 2.56 4.98 86.38 0.43 2.99 16 8 N -0.72 -25.27 5.40 -466.37 -2.52 -27.79 16 9 C 0.56 26.44 7.73 86.66 0.67 27.11 16 10 O -0.58 -32.23 13.55 -4.09 -0.06 -32.29 16 11 C -0.29 -14.13 5.92 -19.70 -0.12 -14.25 16 12 C -0.04 -1.69 9.53 22.50 0.21 -1.48 16 13 C -0.24 -9.49 10.03 22.41 0.22 -9.26 16 14 C -0.07 -3.05 10.01 22.26 0.22 -2.83 16 15 C -0.23 -11.61 7.86 22.72 0.18 -11.43 16 16 C 0.10 5.36 5.18 -21.11 -0.11 5.25 16 17 C -0.51 -29.97 7.66 23.42 0.18 -29.79 16 18 H 0.08 4.99 5.91 -2.91 -0.02 4.98 16 19 C 0.00 -0.15 5.04 85.37 0.43 0.28 16 20 N -0.82 -46.16 12.57 21.88 0.27 -45.89 16 21 Si 1.12 47.48 29.98 68.60 2.06 49.54 16 22 H -0.26 -10.62 7.11 99.48 0.71 -9.91 16 23 H -0.26 -10.24 7.11 99.48 0.71 -9.53 16 24 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 25 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 26 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 27 H 0.06 0.87 7.68 -2.39 -0.02 0.85 16 28 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 29 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 30 H 0.05 0.96 6.43 -2.38 -0.02 0.94 16 31 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 32 H 0.39 5.84 9.05 -74.06 -0.67 5.17 16 33 H 0.06 1.94 6.43 -2.39 -0.02 1.93 16 34 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 35 H 0.41 12.28 6.39 -92.71 -0.59 11.69 16 36 H 0.13 4.21 6.41 -2.91 -0.02 4.19 16 37 H 0.14 4.19 8.06 -2.91 -0.02 4.17 16 38 H 0.13 4.50 8.06 -2.91 -0.02 4.48 16 39 H 0.09 4.83 6.93 -2.91 -0.02 4.81 16 40 H 0.28 16.45 6.54 -92.71 -0.61 15.84 16 Total: -1.00 -69.92 327.25 1.54 -68.38 By element: Atomic # 1 Polarization: 37.40 SS G_CDS: -0.04 Total: 37.37 kcal Atomic # 6 Polarization: -39.76 SS G_CDS: 3.66 Total: -36.10 kcal Atomic # 7 Polarization: -71.44 SS G_CDS: -2.24 Total: -73.68 kcal Atomic # 8 Polarization: -43.61 SS G_CDS: -1.90 Total: -45.51 kcal Atomic # 14 Polarization: 47.48 SS G_CDS: 2.06 Total: 49.54 kcal Total: -69.92 1.54 -68.38 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601321836.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.163 kcal (2) G-P(sol) polarization free energy of solvation -69.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.380 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds