Wall clock time and date at job start Mon Mar 30 2020 01:52:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52996 * 109.46989 * 2 1 4 4 C 1.53000 * 109.46989 * 179.97438 * 3 2 1 5 5 H 1.09004 * 109.47195 * 305.00461 * 4 3 2 6 6 O 1.42897 * 109.47149 * 65.00076 * 4 3 2 7 7 C 1.52997 * 109.47362 * 185.00642 * 4 3 2 8 8 N 1.46504 * 109.47327 * 180.02562 * 7 4 3 9 9 C 1.34775 * 120.00020 * 179.97438 * 8 7 4 10 10 O 1.21617 * 120.00035 * 0.02562 * 9 8 7 11 11 C 1.47433 * 120.00159 * 179.97438 * 9 8 7 12 12 C 1.39222 * 120.27950 * 355.67294 * 11 9 8 13 13 C 1.38228 * 120.09079 * 180.27937 * 12 11 9 14 14 C 1.38824 * 120.67423 * 359.71805 * 13 12 11 15 15 C 1.37597 * 120.57318 * 0.02562 * 14 13 12 16 16 C 1.40711 * 119.87929 * 359.97438 * 15 14 13 17 17 C 1.40891 * 120.32596 * 180.02562 * 16 15 14 18 18 H 1.08004 * 119.99615 * 216.32947 * 17 16 15 19 19 C 1.40267 * 120.00197 * 36.33258 * 17 16 15 20 20 N 1.30625 * 120.00058 * 190.50733 * 19 17 16 21 21 Si 1.86802 * 120.00015 * 10.50211 * 19 17 16 22 22 H 1.48509 * 109.46965 * 267.22708 * 21 19 17 23 23 H 1.48499 * 109.47061 * 27.22336 * 21 19 17 24 24 H 1.48502 * 109.47123 * 147.22806 * 21 19 17 25 25 H 1.09004 * 109.47190 * 300.00065 * 1 2 3 26 26 H 1.09008 * 109.47278 * 59.99750 * 1 2 3 27 27 H 1.08999 * 109.47493 * 179.97438 * 1 2 3 28 28 H 1.09005 * 109.46865 * 240.00643 * 2 1 3 29 29 H 1.08999 * 109.46881 * 120.00690 * 2 1 3 30 30 H 1.09005 * 109.46793 * 60.00598 * 3 2 1 31 31 H 1.08999 * 109.47872 * 300.00083 * 3 2 1 32 32 H 0.96703 * 114.00069 * 60.00534 * 6 4 3 33 33 H 1.08992 * 109.47736 * 59.99857 * 7 4 3 34 34 H 1.09004 * 109.47211 * 299.99680 * 7 4 3 35 35 H 0.97001 * 119.99703 * 359.97438 * 8 7 4 36 36 H 1.08001 * 119.95839 * 359.97438 * 12 11 9 37 37 H 1.08003 * 119.66408 * 179.73476 * 13 12 11 38 38 H 1.08000 * 119.71145 * 180.02562 * 14 13 12 39 39 H 1.07996 * 120.06329 * 180.02562 * 15 14 13 40 40 H 0.97003 * 120.00012 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5699 1.4425 0.0006 5 1 3.9330 0.8531 0.8427 6 8 4.0468 0.8729 -1.2201 7 6 4.0799 2.8794 0.1265 8 7 5.5450 2.8795 0.1265 9 6 6.2188 4.0423 0.2279 10 8 5.6107 5.0915 0.3198 11 6 7.6931 4.0423 0.2284 12 6 8.3952 2.8401 0.2153 13 6 9.7774 2.8446 0.2217 14 6 10.4817 4.0409 0.2354 15 6 9.8158 5.2450 0.2433 16 6 8.4089 5.2681 0.2370 17 6 7.7175 6.4956 0.2446 18 1 6.7934 6.5915 0.7953 19 6 8.2293 7.5932 -0.4632 20 7 7.7088 8.7793 -0.2947 21 14 9.6554 7.3587 -1.6468 22 1 10.9349 7.6114 -0.9364 23 1 9.6440 5.9675 -2.1660 24 1 9.5211 8.3107 -2.7785 25 1 -0.3634 0.5139 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 1.8933 -0.5138 -0.8901 29 1 1.8933 -0.5139 0.8899 30 1 1.6766 1.9562 0.8901 31 1 1.6767 1.9564 -0.8899 32 1 3.7619 1.3473 -2.0131 33 1 3.7163 3.3139 1.0576 34 1 3.7170 3.4689 -0.7155 35 1 6.0300 2.0426 0.0536 36 1 7.8591 1.9026 0.2050 37 1 10.3150 1.9079 0.2157 38 1 11.5616 4.0263 0.2398 39 1 10.3720 6.1707 0.2536 40 1 8.0624 9.5383 -0.7845 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601322054.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:52:13 Heat of formation + Delta-G solvation = -85.947674 kcal Electronic energy + Delta-G solvation = -21157.755790 eV Core-core repulsion = 17936.410477 eV Total energy + Delta-G solvation = -3221.345312 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.24188 -38.11619 -36.81073 -34.34664 -33.94815 -33.35707 -30.61894 -30.43621 -29.34789 -26.24645 -25.09392 -22.56129 -21.88174 -21.45318 -20.81140 -19.40659 -17.63142 -16.92485 -16.39621 -16.22316 -15.35354 -14.93725 -14.79157 -14.28684 -14.07516 -13.86289 -13.80521 -13.45675 -13.43110 -12.65921 -12.39711 -12.34625 -12.05480 -11.97584 -11.79896 -11.46953 -11.41538 -10.94808 -10.88732 -10.84634 -10.69330 -10.42768 -10.20794 -9.98891 -9.79058 -9.24529 -8.46632 -8.39689 -7.79975 -7.57618 -6.89139 -4.47392 2.12121 2.61859 3.09277 3.17932 3.29728 3.77959 3.96075 4.02987 4.37821 4.56935 4.61791 4.77970 4.81148 5.08698 5.11546 5.36387 5.39643 5.48214 5.62253 5.64454 5.78443 5.84351 5.85053 5.90798 5.99761 6.10533 6.11601 6.15772 6.41466 6.52831 6.81020 7.09391 7.11777 7.24711 7.41406 7.54483 7.60863 7.77188 8.03272 8.35352 8.49101 8.65535 8.87879 9.37745 10.07617 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.024288 B = 0.004167 C = 0.003738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1152.561661 B = 6718.455638 C = 7489.723373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.120 4.120 3 C -0.150 4.150 4 C 0.096 3.904 5 H 0.102 0.898 6 O -0.559 6.559 7 C 0.093 3.907 8 N -0.743 5.743 9 C 0.560 3.440 10 O -0.531 6.531 11 C -0.249 4.249 12 C -0.040 4.040 13 C -0.254 4.254 14 C -0.065 4.065 15 C -0.227 4.227 16 C 0.117 3.883 17 C -0.403 4.403 18 H 0.124 0.876 19 C 0.079 3.921 20 N -0.794 5.794 21 Si 0.907 3.093 22 H -0.268 1.268 23 H -0.242 1.242 24 H -0.289 1.289 25 H 0.053 0.947 26 H 0.053 0.947 27 H 0.052 0.948 28 H 0.068 0.932 29 H 0.060 0.940 30 H 0.074 0.926 31 H 0.068 0.932 32 H 0.376 0.624 33 H 0.068 0.932 34 H 0.062 0.938 35 H 0.396 0.604 36 H 0.096 0.904 37 H 0.097 0.903 38 H 0.096 0.904 39 H 0.104 0.896 40 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.374 -13.256 -1.265 15.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.158 4.158 3 C -0.188 4.188 4 C 0.036 3.964 5 H 0.120 0.880 6 O -0.364 6.364 7 C -0.032 4.032 8 N -0.399 5.399 9 C 0.353 3.647 10 O -0.409 6.409 11 C -0.254 4.254 12 C -0.059 4.059 13 C -0.274 4.274 14 C -0.084 4.084 15 C -0.245 4.245 16 C 0.112 3.888 17 C -0.429 4.429 18 H 0.141 0.859 19 C -0.142 4.142 20 N -0.418 5.418 21 Si 0.733 3.267 22 H -0.194 1.194 23 H -0.165 1.165 24 H -0.216 1.216 25 H 0.072 0.928 26 H 0.072 0.928 27 H 0.071 0.929 28 H 0.087 0.913 29 H 0.079 0.921 30 H 0.093 0.907 31 H 0.087 0.913 32 H 0.223 0.777 33 H 0.086 0.914 34 H 0.081 0.919 35 H 0.231 0.769 36 H 0.114 0.886 37 H 0.115 0.885 38 H 0.114 0.886 39 H 0.122 0.878 40 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -7.631 -12.596 -0.814 14.750 hybrid contribution 0.587 0.104 -0.882 1.065 sum -7.044 -12.492 -1.697 14.441 Atomic orbital electron populations 1.21792 0.96025 1.01489 1.01767 1.21450 0.95451 0.96301 1.02558 1.22256 0.95402 0.97844 1.03279 1.22211 0.92835 0.93284 0.88032 0.87991 1.86557 1.77198 1.56978 1.15671 1.21844 0.82518 0.96293 1.02496 1.45875 1.05462 1.09825 1.78712 1.18378 0.87979 0.82500 0.75850 1.90724 1.70129 1.30552 1.49467 1.19407 0.90797 0.93834 1.21333 1.20799 0.94200 0.95427 0.95486 1.20296 0.93663 0.96462 1.16964 1.20742 0.97778 0.93006 0.96878 1.21150 0.94575 0.96554 1.12269 1.17559 0.90803 0.92401 0.88010 1.20194 1.08523 0.90918 1.23308 0.85876 1.26379 0.96719 0.94038 0.97015 1.69571 1.37581 1.00182 1.34436 0.86394 0.80455 0.80299 0.79578 1.19419 1.16547 1.21620 0.92805 0.92814 0.92856 0.91346 0.92074 0.90710 0.91302 0.77677 0.91368 0.91928 0.76936 0.88599 0.88515 0.88575 0.87789 0.90288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.12 9.91 37.16 0.37 -0.75 16 2 C -0.12 -0.98 5.83 -26.73 -0.16 -1.14 16 3 C -0.15 -1.31 4.89 -26.73 -0.13 -1.44 16 4 C 0.10 1.02 3.05 -26.73 -0.08 0.94 16 5 H 0.10 1.08 8.14 -51.93 -0.42 0.66 16 6 O -0.56 -6.20 12.62 -35.23 -0.44 -6.64 16 7 C 0.09 1.34 5.34 -4.04 -0.02 1.32 16 8 N -0.74 -12.95 5.40 -61.38 -0.33 -13.28 16 9 C 0.56 12.87 7.72 -12.52 -0.10 12.77 16 10 O -0.53 -14.21 13.54 5.26 0.07 -14.14 16 11 C -0.25 -5.92 5.92 -104.37 -0.62 -6.54 16 12 C -0.04 -0.82 9.52 -39.22 -0.37 -1.19 16 13 C -0.25 -5.09 10.03 -39.37 -0.39 -5.48 16 14 C -0.07 -1.38 10.01 -39.60 -0.40 -1.77 16 15 C -0.23 -5.42 7.00 -38.88 -0.27 -5.69 16 16 C 0.12 3.05 5.03 -106.54 -0.54 2.51 16 17 C -0.40 -11.42 8.31 -37.82 -0.31 -11.74 16 18 H 0.12 3.86 5.96 -52.48 -0.31 3.55 16 19 C 0.08 2.12 5.47 -17.30 -0.09 2.03 16 20 N -0.79 -21.76 13.92 55.56 0.77 -20.98 16 21 Si 0.91 20.92 24.52 -169.99 -4.17 16.76 16 22 H -0.27 -5.89 6.76 56.52 0.38 -5.50 16 23 H -0.24 -5.74 6.73 56.52 0.38 -5.36 16 24 H -0.29 -6.44 7.11 56.52 0.40 -6.03 16 25 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 26 H 0.05 0.38 8.14 -51.92 -0.42 -0.04 16 27 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 28 H 0.07 0.59 7.82 -51.93 -0.41 0.19 16 29 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 32 H 0.38 3.25 9.05 45.56 0.41 3.66 16 33 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 34 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 35 H 0.40 6.15 6.40 -40.82 -0.26 5.89 16 36 H 0.10 1.62 6.42 -52.49 -0.34 1.28 16 37 H 0.10 1.65 8.06 -52.48 -0.42 1.23 16 38 H 0.10 1.73 8.06 -52.49 -0.42 1.31 16 39 H 0.10 2.45 5.01 -52.49 -0.26 2.19 16 40 H 0.29 7.04 8.29 -40.82 -0.34 6.70 16 LS Contribution 326.98 15.07 4.93 4.93 Total: -1.00 -31.09 326.98 -7.28 -38.37 By element: Atomic # 1 Polarization: 16.16 SS G_CDS: -4.99 Total: 11.17 kcal Atomic # 6 Polarization: -13.06 SS G_CDS: -3.12 Total: -16.18 kcal Atomic # 7 Polarization: -34.71 SS G_CDS: 0.44 Total: -34.27 kcal Atomic # 8 Polarization: -20.41 SS G_CDS: -0.37 Total: -20.78 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -4.17 Total: 16.76 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -31.09 -7.28 -38.37 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601322054.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.573 kcal (2) G-P(sol) polarization free energy of solvation -31.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.375 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds