Wall clock time and date at job start Mon Mar 30 2020 01:52:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52996 * 109.46989 * 2 1 4 4 C 1.53000 * 109.46989 * 179.97438 * 3 2 1 5 5 H 1.09004 * 109.47195 * 305.00461 * 4 3 2 6 6 O 1.42897 * 109.47149 * 65.00076 * 4 3 2 7 7 C 1.52997 * 109.47362 * 185.00642 * 4 3 2 8 8 N 1.46504 * 109.47327 * 180.02562 * 7 4 3 9 9 C 1.34775 * 120.00020 * 179.97438 * 8 7 4 10 10 O 1.21617 * 120.00035 * 0.02562 * 9 8 7 11 11 C 1.47433 * 120.00159 * 179.97438 * 9 8 7 12 12 C 1.39222 * 120.27950 * 355.67294 * 11 9 8 13 13 C 1.38228 * 120.09079 * 180.27937 * 12 11 9 14 14 C 1.38824 * 120.67423 * 359.71805 * 13 12 11 15 15 C 1.37597 * 120.57318 * 0.02562 * 14 13 12 16 16 C 1.40711 * 119.87929 * 359.97438 * 15 14 13 17 17 C 1.40891 * 120.32596 * 180.02562 * 16 15 14 18 18 H 1.08004 * 119.99615 * 216.32947 * 17 16 15 19 19 C 1.40267 * 120.00197 * 36.33258 * 17 16 15 20 20 N 1.30625 * 120.00058 * 190.50733 * 19 17 16 21 21 Si 1.86802 * 120.00015 * 10.50211 * 19 17 16 22 22 H 1.48509 * 109.46965 * 267.22708 * 21 19 17 23 23 H 1.48499 * 109.47061 * 27.22336 * 21 19 17 24 24 H 1.48502 * 109.47123 * 147.22806 * 21 19 17 25 25 H 1.09004 * 109.47190 * 300.00065 * 1 2 3 26 26 H 1.09008 * 109.47278 * 59.99750 * 1 2 3 27 27 H 1.08999 * 109.47493 * 179.97438 * 1 2 3 28 28 H 1.09005 * 109.46865 * 240.00643 * 2 1 3 29 29 H 1.08999 * 109.46881 * 120.00690 * 2 1 3 30 30 H 1.09005 * 109.46793 * 60.00598 * 3 2 1 31 31 H 1.08999 * 109.47872 * 300.00083 * 3 2 1 32 32 H 0.96703 * 114.00069 * 60.00534 * 6 4 3 33 33 H 1.08992 * 109.47736 * 59.99857 * 7 4 3 34 34 H 1.09004 * 109.47211 * 299.99680 * 7 4 3 35 35 H 0.97001 * 119.99703 * 359.97438 * 8 7 4 36 36 H 1.08001 * 119.95839 * 359.97438 * 12 11 9 37 37 H 1.08003 * 119.66408 * 179.73476 * 13 12 11 38 38 H 1.08000 * 119.71145 * 180.02562 * 14 13 12 39 39 H 1.07996 * 120.06329 * 180.02562 * 15 14 13 40 40 H 0.97003 * 120.00012 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5699 1.4425 0.0006 5 1 3.9330 0.8531 0.8427 6 8 4.0468 0.8729 -1.2201 7 6 4.0799 2.8794 0.1265 8 7 5.5450 2.8795 0.1265 9 6 6.2188 4.0423 0.2279 10 8 5.6107 5.0915 0.3198 11 6 7.6931 4.0423 0.2284 12 6 8.3952 2.8401 0.2153 13 6 9.7774 2.8446 0.2217 14 6 10.4817 4.0409 0.2354 15 6 9.8158 5.2450 0.2433 16 6 8.4089 5.2681 0.2370 17 6 7.7175 6.4956 0.2446 18 1 6.7934 6.5915 0.7953 19 6 8.2293 7.5932 -0.4632 20 7 7.7088 8.7793 -0.2947 21 14 9.6554 7.3587 -1.6468 22 1 10.9349 7.6114 -0.9364 23 1 9.6440 5.9675 -2.1660 24 1 9.5211 8.3107 -2.7785 25 1 -0.3634 0.5139 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 1.8933 -0.5138 -0.8901 29 1 1.8933 -0.5139 0.8899 30 1 1.6766 1.9562 0.8901 31 1 1.6767 1.9564 -0.8899 32 1 3.7619 1.3473 -2.0131 33 1 3.7163 3.3139 1.0576 34 1 3.7170 3.4689 -0.7155 35 1 6.0300 2.0426 0.0536 36 1 7.8591 1.9026 0.2050 37 1 10.3150 1.9079 0.2157 38 1 11.5616 4.0263 0.2398 39 1 10.3720 6.1707 0.2536 40 1 8.0624 9.5383 -0.7845 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601322054.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:52:12 Heat of formation + Delta-G solvation = -109.193105 kcal Electronic energy + Delta-G solvation = -21158.763787 eV Core-core repulsion = 17936.410477 eV Total energy + Delta-G solvation = -3222.353310 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.88412 -39.31548 -38.45054 -35.74297 -35.13600 -34.92742 -32.30245 -32.12487 -30.51036 -27.59325 -26.66720 -24.09104 -23.18530 -22.54721 -22.10751 -21.05925 -19.48646 -18.47767 -17.48844 -17.25069 -17.15260 -16.40632 -15.92136 -15.81390 -15.70332 -15.31851 -15.14248 -14.79628 -14.46927 -14.27753 -13.97267 -13.89820 -13.49536 -13.18260 -12.74574 -12.69513 -12.65266 -12.51595 -12.24627 -12.14538 -12.04287 -11.70202 -11.61787 -11.50599 -11.08822 -10.96345 -10.30761 -10.00637 -9.51774 -9.41489 -8.82660 -6.48982 0.34008 0.83484 1.23466 1.36856 1.46227 2.09831 2.25115 2.40017 2.71058 3.47798 3.53829 3.64786 3.96805 4.06181 4.21384 4.26804 4.27363 4.36063 4.44996 4.63827 4.66239 4.70553 4.77956 4.86923 4.93840 4.99769 5.02426 5.08623 5.26356 5.29780 5.39136 5.46563 5.49090 5.60985 5.69113 5.87045 5.96247 6.27117 6.47091 6.66799 6.76062 6.79209 6.92113 7.63563 8.21636 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.024288 B = 0.004167 C = 0.003738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1152.561661 B = 6718.455638 C = 7489.723373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.116 4.116 3 C -0.145 4.145 4 C 0.113 3.887 5 H 0.110 0.890 6 O -0.566 6.566 7 C 0.090 3.910 8 N -0.721 5.721 9 C 0.552 3.448 10 O -0.580 6.580 11 C -0.267 4.267 12 C -0.039 4.039 13 C -0.231 4.231 14 C -0.061 4.061 15 C -0.247 4.247 16 C 0.100 3.900 17 C -0.451 4.451 18 H 0.072 0.928 19 C 0.036 3.964 20 N -0.849 5.849 21 Si 0.967 3.033 22 H -0.247 1.247 23 H -0.250 1.250 24 H -0.280 1.280 25 H 0.054 0.946 26 H 0.054 0.946 27 H 0.059 0.941 28 H 0.065 0.935 29 H 0.063 0.937 30 H 0.076 0.924 31 H 0.072 0.928 32 H 0.387 0.613 33 H 0.060 0.940 34 H 0.053 0.947 35 H 0.409 0.591 36 H 0.137 0.863 37 H 0.144 0.856 38 H 0.137 0.863 39 H 0.102 0.898 40 H 0.293 0.707 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.633 -17.290 -1.991 18.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.154 4.154 3 C -0.183 4.183 4 C 0.053 3.947 5 H 0.128 0.872 6 O -0.373 6.373 7 C -0.034 4.034 8 N -0.376 5.376 9 C 0.344 3.656 10 O -0.462 6.462 11 C -0.272 4.272 12 C -0.058 4.058 13 C -0.250 4.250 14 C -0.080 4.080 15 C -0.266 4.266 16 C 0.096 3.904 17 C -0.480 4.480 18 H 0.090 0.910 19 C -0.178 4.178 20 N -0.476 5.476 21 Si 0.790 3.210 22 H -0.172 1.172 23 H -0.173 1.173 24 H -0.206 1.206 25 H 0.073 0.927 26 H 0.073 0.927 27 H 0.078 0.922 28 H 0.084 0.916 29 H 0.081 0.919 30 H 0.095 0.905 31 H 0.091 0.909 32 H 0.236 0.764 33 H 0.078 0.922 34 H 0.072 0.928 35 H 0.246 0.754 36 H 0.155 0.845 37 H 0.162 0.838 38 H 0.155 0.845 39 H 0.120 0.880 40 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -5.896 -16.690 -1.539 17.767 hybrid contribution 0.028 0.999 -0.585 1.159 sum -5.868 -15.690 -2.124 16.886 Atomic orbital electron populations 1.21786 0.95349 1.02017 1.01891 1.21412 0.96014 0.95443 1.02504 1.22219 0.93812 0.98647 1.03659 1.22082 0.93901 0.90361 0.88348 0.87219 1.86531 1.77473 1.57120 1.16160 1.22081 0.80474 0.99139 1.01752 1.45652 1.06822 1.08598 1.76485 1.18565 0.88288 0.83182 0.75554 1.90727 1.70994 1.32742 1.51692 1.19819 0.91621 0.94719 1.20993 1.21223 0.94977 0.95552 0.94022 1.20951 0.93530 0.98005 1.12469 1.21256 1.00065 0.92074 0.94577 1.21259 0.93602 0.98167 1.13592 1.17826 0.92263 0.92373 0.87975 1.19948 1.08006 0.93466 1.26575 0.91025 1.27112 0.99177 0.93401 0.98119 1.69625 1.40098 1.01051 1.36823 0.85483 0.78167 0.79644 0.77737 1.17211 1.17350 1.20625 0.92701 0.92720 0.92155 0.91624 0.91872 0.90516 0.90896 0.76428 0.92207 0.92835 0.75396 0.84487 0.83793 0.84497 0.87993 0.89631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.94 9.91 71.98 0.71 -1.22 16 2 C -0.12 -1.65 5.83 30.59 0.18 -1.47 16 3 C -0.15 -2.29 4.89 30.59 0.15 -2.14 16 4 C 0.11 2.18 3.05 30.59 0.09 2.27 16 5 H 0.11 2.01 8.14 -2.39 -0.02 1.99 16 6 O -0.57 -11.08 12.62 -148.98 -1.88 -12.96 16 7 C 0.09 2.54 5.34 86.38 0.46 3.00 16 8 N -0.72 -24.45 5.40 -466.36 -2.52 -26.97 16 9 C 0.55 25.91 7.72 86.67 0.67 26.58 16 10 O -0.58 -33.20 13.54 -4.08 -0.06 -33.26 16 11 C -0.27 -12.58 5.92 -19.70 -0.12 -12.69 16 12 C -0.04 -1.44 9.52 22.50 0.21 -1.22 16 13 C -0.23 -7.85 10.03 22.41 0.22 -7.62 16 14 C -0.06 -2.31 10.01 22.26 0.22 -2.08 16 15 C -0.25 -11.48 7.00 22.72 0.16 -11.33 16 16 C 0.10 5.30 5.03 -21.11 -0.11 5.19 16 17 C -0.45 -27.46 8.31 23.41 0.19 -27.26 16 18 H 0.07 4.98 5.96 -2.91 -0.02 4.96 16 19 C 0.04 2.04 5.47 85.37 0.47 2.51 16 20 N -0.85 -49.97 13.92 21.88 0.30 -49.67 16 21 Si 0.97 44.12 24.52 68.60 1.68 45.81 16 22 H -0.25 -10.29 6.76 99.48 0.67 -9.61 16 23 H -0.25 -11.48 6.73 99.48 0.67 -10.81 16 24 H -0.28 -12.08 7.11 99.48 0.71 -11.37 16 25 H 0.05 0.68 8.14 -2.38 -0.02 0.66 16 26 H 0.05 0.68 8.14 -2.38 -0.02 0.66 16 27 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 28 H 0.07 0.98 7.82 -2.38 -0.02 0.96 16 29 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 30 H 0.08 1.21 8.14 -2.38 -0.02 1.19 16 31 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 32 H 0.39 5.84 9.05 -74.05 -0.67 5.17 16 33 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 34 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 35 H 0.41 11.53 6.40 -92.71 -0.59 10.94 16 36 H 0.14 3.86 6.42 -2.91 -0.02 3.84 16 37 H 0.14 3.69 8.06 -2.91 -0.02 3.67 16 38 H 0.14 4.06 8.06 -2.91 -0.02 4.03 16 39 H 0.10 4.71 5.01 -2.91 -0.01 4.69 16 40 H 0.29 15.37 8.29 -92.71 -0.77 14.60 16 Total: -1.00 -73.74 326.98 0.79 -72.96 By element: Atomic # 1 Polarization: 31.86 SS G_CDS: -0.27 Total: 31.58 kcal Atomic # 6 Polarization: -31.02 SS G_CDS: 3.53 Total: -27.49 kcal Atomic # 7 Polarization: -74.42 SS G_CDS: -2.21 Total: -76.63 kcal Atomic # 8 Polarization: -44.29 SS G_CDS: -1.94 Total: -46.22 kcal Atomic # 14 Polarization: 44.12 SS G_CDS: 1.68 Total: 45.81 kcal Total: -73.74 0.79 -72.96 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601322054.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.237 kcal (2) G-P(sol) polarization free energy of solvation -73.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.956 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds