Wall clock time and date at job start Mon Mar 30 2020 01:52:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47165 * 2 1 4 4 C 1.53007 * 109.47144 * 180.02562 * 3 2 1 5 5 H 1.08998 * 109.46802 * 55.00059 * 4 3 2 6 6 O 1.42899 * 109.46754 * 295.00078 * 4 3 2 7 7 C 1.52995 * 109.47360 * 175.00344 * 4 3 2 8 8 N 1.46494 * 109.47394 * 184.99982 * 7 4 3 9 9 C 1.34776 * 120.00009 * 179.97438 * 8 7 4 10 10 O 1.21609 * 120.00181 * 0.02562 * 9 8 7 11 11 C 1.47435 * 119.99851 * 180.02562 * 9 8 7 12 12 C 1.39227 * 120.28510 * 356.68670 * 11 9 8 13 13 C 1.38223 * 120.09723 * 180.28291 * 12 11 9 14 14 C 1.38826 * 120.67197 * 359.69417 * 13 12 11 15 15 C 1.37607 * 120.57000 * 0.02562 * 14 13 12 16 16 C 1.40702 * 119.88222 * 0.02562 * 15 14 13 17 17 C 1.40891 * 120.32820 * 179.97438 * 16 15 14 18 18 H 1.07998 * 119.99743 * 145.79457 * 17 16 15 19 19 C 1.40273 * 119.99861 * 325.79822 * 17 16 15 20 20 N 1.30629 * 119.99711 * 340.74144 * 19 17 16 21 21 Si 1.86800 * 120.00012 * 160.74702 * 19 17 16 22 22 H 1.48505 * 109.46791 * 269.99431 * 21 19 17 23 23 H 1.48496 * 109.47300 * 29.99461 * 21 19 17 24 24 H 1.48496 * 109.47010 * 149.99877 * 21 19 17 25 25 H 1.09000 * 109.47050 * 299.99954 * 1 2 3 26 26 H 1.09005 * 109.47231 * 59.99734 * 1 2 3 27 27 H 1.09001 * 109.47397 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47050 * 240.00045 * 2 1 3 29 29 H 1.08998 * 109.47239 * 120.00643 * 2 1 3 30 30 H 1.09000 * 109.47100 * 60.00076 * 3 2 1 31 31 H 1.08997 * 109.47749 * 299.99928 * 3 2 1 32 32 H 0.96694 * 114.00419 * 300.00027 * 6 4 3 33 33 H 1.09004 * 109.47250 * 64.99839 * 7 4 3 34 34 H 1.09005 * 109.47069 * 305.00015 * 7 4 3 35 35 H 0.96994 * 119.99831 * 359.97438 * 8 7 4 36 36 H 1.08005 * 119.95480 * 359.97438 * 12 11 9 37 37 H 1.07993 * 119.66771 * 179.71616 * 13 12 11 38 38 H 1.08002 * 119.71786 * 180.02562 * 14 13 12 39 39 H 1.07995 * 120.05544 * 180.02562 * 15 14 13 40 40 H 0.97003 * 120.00596 * 354.83519 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 1 3.9330 0.8531 -0.8427 6 8 4.0468 0.8729 1.2201 7 6 4.0800 2.8794 -0.1263 8 7 5.5400 2.8707 -0.2470 9 6 6.2129 4.0319 -0.3707 10 8 5.6082 5.0869 -0.3816 11 6 7.6821 4.0230 -0.4927 12 6 8.3862 2.8246 -0.4118 13 6 9.7641 2.8215 -0.5209 14 6 10.4616 4.0056 -0.7179 15 6 9.7931 5.2050 -0.8076 16 6 8.3906 5.2357 -0.6988 17 6 7.6967 6.4586 -0.7888 18 1 6.7186 6.4920 -1.2455 19 6 8.2762 7.6325 -0.2852 20 7 9.2509 7.5600 0.5815 21 14 7.6541 9.2996 -0.8538 22 1 8.4192 9.7313 -2.0512 23 1 6.2128 9.1993 -1.1970 24 1 7.8359 10.2933 0.2345 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8899 30 1 1.6767 1.9563 0.8900 31 1 1.6767 1.9564 -0.8899 32 1 3.7618 1.3471 2.0131 33 1 3.7921 3.4459 0.7593 34 1 3.6450 3.3433 -1.0116 35 1 6.0223 2.0292 -0.2378 36 1 7.8554 1.8966 -0.2586 37 1 10.3036 1.8885 -0.4526 38 1 11.5382 3.9852 -0.8014 39 1 10.3440 6.1211 -0.9613 40 1 9.5239 6.6983 0.9335 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601322055.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:52:16 Heat of formation + Delta-G solvation = -95.447559 kcal Electronic energy + Delta-G solvation = -21119.121103 eV Core-core repulsion = 17897.363844 eV Total energy + Delta-G solvation = -3221.757258 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.22384 -38.11207 -36.80057 -34.36413 -34.12075 -33.45624 -30.51465 -29.60149 -29.14208 -26.23085 -25.00056 -22.61096 -21.77050 -21.43199 -20.83403 -19.38522 -18.10935 -16.85099 -16.35325 -16.14470 -15.05084 -14.85601 -14.68491 -14.26084 -14.04597 -13.91192 -13.76471 -13.53707 -13.35808 -12.61342 -12.36025 -12.15785 -12.04846 -11.96234 -11.63828 -11.46020 -11.13271 -10.92604 -10.89421 -10.86700 -10.73279 -10.37229 -10.15583 -10.06755 -9.58816 -9.06992 -8.50289 -8.39510 -7.77562 -7.59506 -7.13444 -4.45236 2.25348 2.74657 3.20083 3.31415 3.41923 3.79231 4.04605 4.07590 4.34685 4.55845 4.65295 4.76290 4.79397 5.06800 5.09961 5.34712 5.42663 5.49404 5.60340 5.62654 5.79235 5.83085 5.88505 5.91031 6.07456 6.09896 6.12706 6.20685 6.51899 6.73342 7.00255 7.10186 7.29382 7.51085 7.52842 7.62077 7.73849 7.90081 8.10814 8.22727 8.39247 8.74590 8.87316 9.36614 10.05265 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.020006 B = 0.004238 C = 0.003600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1399.278784 B = 6605.571992 C = 7775.652967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.120 4.120 3 C -0.149 4.149 4 C 0.096 3.904 5 H 0.102 0.898 6 O -0.558 6.558 7 C 0.094 3.906 8 N -0.744 5.744 9 C 0.562 3.438 10 O -0.540 6.540 11 C -0.265 4.265 12 C -0.042 4.042 13 C -0.259 4.259 14 C -0.075 4.075 15 C -0.202 4.202 16 C 0.121 3.879 17 C -0.467 4.467 18 H 0.105 0.895 19 C 0.031 3.969 20 N -0.795 5.795 21 Si 1.073 2.927 22 H -0.275 1.275 23 H -0.273 1.273 24 H -0.276 1.276 25 H 0.053 0.947 26 H 0.053 0.947 27 H 0.053 0.947 28 H 0.061 0.939 29 H 0.068 0.932 30 H 0.068 0.932 31 H 0.074 0.926 32 H 0.375 0.625 33 H 0.062 0.938 34 H 0.067 0.933 35 H 0.395 0.605 36 H 0.092 0.908 37 H 0.093 0.907 38 H 0.093 0.907 39 H 0.107 0.893 40 H 0.298 0.702 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.767 -10.311 -0.454 14.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.158 4.158 3 C -0.187 4.187 4 C 0.036 3.964 5 H 0.120 0.880 6 O -0.364 6.364 7 C -0.031 4.031 8 N -0.399 5.399 9 C 0.356 3.644 10 O -0.418 6.418 11 C -0.270 4.270 12 C -0.061 4.061 13 C -0.279 4.279 14 C -0.094 4.094 15 C -0.221 4.221 16 C 0.116 3.884 17 C -0.494 4.494 18 H 0.123 0.877 19 C -0.191 4.191 20 N -0.418 5.418 21 Si 0.897 3.103 22 H -0.201 1.201 23 H -0.198 1.198 24 H -0.202 1.202 25 H 0.072 0.928 26 H 0.072 0.928 27 H 0.072 0.928 28 H 0.079 0.921 29 H 0.087 0.913 30 H 0.087 0.913 31 H 0.093 0.907 32 H 0.223 0.777 33 H 0.080 0.920 34 H 0.085 0.915 35 H 0.230 0.770 36 H 0.110 0.890 37 H 0.111 0.889 38 H 0.111 0.889 39 H 0.125 0.875 40 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -10.653 -8.317 -0.686 13.533 hybrid contribution -0.185 -1.819 0.275 1.849 sum -10.839 -10.136 -0.411 14.846 Atomic orbital electron populations 1.21789 0.96002 1.01510 1.01753 1.21451 0.95467 0.96282 1.02584 1.22255 0.95372 0.97871 1.03244 1.22214 0.92835 0.93289 0.88047 0.87979 1.86565 1.77213 1.56981 1.15629 1.21842 0.82740 0.96282 1.02202 1.45910 1.05907 1.09603 1.78513 1.18402 0.87976 0.82458 0.75535 1.90674 1.70145 1.30318 1.50698 1.19394 0.91032 0.94820 1.21753 1.20742 0.94187 0.95258 0.95954 1.20252 0.93743 0.96702 1.17189 1.20751 0.97616 0.93171 0.97898 1.21251 0.94708 0.96692 1.09443 1.17514 0.91107 0.92203 0.87548 1.21203 1.05527 0.91944 1.30762 0.87692 1.27268 0.92810 1.05501 0.93502 1.70358 1.20456 1.32450 1.18550 0.83516 0.76977 0.72890 0.76954 1.20060 1.19788 1.20158 0.92810 0.92814 0.92832 0.92062 0.91335 0.91319 0.90726 0.77726 0.92018 0.91451 0.77012 0.89007 0.88870 0.88872 0.87537 0.88778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.12 9.91 37.16 0.37 -0.75 16 2 C -0.12 -1.00 5.83 -26.73 -0.16 -1.15 16 3 C -0.15 -1.32 4.89 -26.73 -0.13 -1.45 16 4 C 0.10 1.04 3.00 -26.73 -0.08 0.96 16 5 H 0.10 1.12 8.14 -51.93 -0.42 0.70 16 6 O -0.56 -6.37 12.82 -35.23 -0.45 -6.82 16 7 C 0.09 1.37 5.31 -4.05 -0.02 1.35 16 8 N -0.74 -13.36 5.45 -61.38 -0.33 -13.70 16 9 C 0.56 13.22 7.73 -12.52 -0.10 13.12 16 10 O -0.54 -14.41 13.56 5.27 0.07 -14.34 16 11 C -0.27 -6.55 5.92 -104.36 -0.62 -7.17 16 12 C -0.04 -0.92 9.53 -39.22 -0.37 -1.29 16 13 C -0.26 -5.53 10.03 -39.37 -0.39 -5.93 16 14 C -0.08 -1.69 10.01 -39.59 -0.40 -2.09 16 15 C -0.20 -5.09 7.87 -38.88 -0.31 -5.39 16 16 C 0.12 3.25 5.17 -106.54 -0.55 2.70 16 17 C -0.47 -12.98 7.65 -37.81 -0.29 -13.27 16 18 H 0.11 3.05 5.92 -52.49 -0.31 2.74 16 19 C 0.03 0.81 5.04 -17.30 -0.09 0.72 16 20 N -0.79 -21.49 12.57 55.56 0.70 -20.79 16 21 Si 1.07 22.74 29.98 -169.99 -5.10 17.64 16 22 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 23 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 24 H -0.28 -5.72 7.11 56.52 0.40 -5.32 16 25 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 26 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 27 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 28 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.07 0.60 7.82 -51.93 -0.41 0.20 16 30 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 32 H 0.38 3.31 9.04 45.56 0.41 3.72 16 33 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 34 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 35 H 0.39 6.42 6.51 -40.82 -0.27 6.16 16 36 H 0.09 1.67 6.41 -52.48 -0.34 1.33 16 37 H 0.09 1.72 8.06 -52.49 -0.42 1.30 16 38 H 0.09 1.82 8.06 -52.49 -0.42 1.40 16 39 H 0.11 2.73 6.94 -52.49 -0.36 2.37 16 40 H 0.30 8.26 6.55 -40.82 -0.27 7.99 16 LS Contribution 332.21 15.07 5.01 5.01 Total: -1.00 -30.83 332.21 -8.22 -39.05 By element: Atomic # 1 Polarization: 18.57 SS G_CDS: -4.99 Total: 13.59 kcal Atomic # 6 Polarization: -16.50 SS G_CDS: -3.13 Total: -19.64 kcal Atomic # 7 Polarization: -34.85 SS G_CDS: 0.36 Total: -34.49 kcal Atomic # 8 Polarization: -20.78 SS G_CDS: -0.38 Total: -21.16 kcal Atomic # 14 Polarization: 22.74 SS G_CDS: -5.10 Total: 17.64 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -30.83 -8.22 -39.05 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601322055.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.397 kcal (2) G-P(sol) polarization free energy of solvation -30.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.050 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds