Wall clock time and date at job start Mon Mar 30 2020 01:52:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47165 * 2 1 4 4 C 1.53007 * 109.47144 * 180.02562 * 3 2 1 5 5 H 1.08998 * 109.46802 * 55.00059 * 4 3 2 6 6 O 1.42899 * 109.46754 * 295.00078 * 4 3 2 7 7 C 1.52995 * 109.47360 * 175.00344 * 4 3 2 8 8 N 1.46494 * 109.47394 * 184.99982 * 7 4 3 9 9 C 1.34776 * 120.00009 * 179.97438 * 8 7 4 10 10 O 1.21609 * 120.00181 * 0.02562 * 9 8 7 11 11 C 1.47435 * 119.99851 * 180.02562 * 9 8 7 12 12 C 1.39227 * 120.28510 * 356.68670 * 11 9 8 13 13 C 1.38223 * 120.09723 * 180.28291 * 12 11 9 14 14 C 1.38826 * 120.67197 * 359.69417 * 13 12 11 15 15 C 1.37607 * 120.57000 * 0.02562 * 14 13 12 16 16 C 1.40702 * 119.88222 * 0.02562 * 15 14 13 17 17 C 1.40891 * 120.32820 * 179.97438 * 16 15 14 18 18 H 1.07998 * 119.99743 * 145.79457 * 17 16 15 19 19 C 1.40273 * 119.99861 * 325.79822 * 17 16 15 20 20 N 1.30629 * 119.99711 * 340.74144 * 19 17 16 21 21 Si 1.86800 * 120.00012 * 160.74702 * 19 17 16 22 22 H 1.48505 * 109.46791 * 269.99431 * 21 19 17 23 23 H 1.48496 * 109.47300 * 29.99461 * 21 19 17 24 24 H 1.48496 * 109.47010 * 149.99877 * 21 19 17 25 25 H 1.09000 * 109.47050 * 299.99954 * 1 2 3 26 26 H 1.09005 * 109.47231 * 59.99734 * 1 2 3 27 27 H 1.09001 * 109.47397 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47050 * 240.00045 * 2 1 3 29 29 H 1.08998 * 109.47239 * 120.00643 * 2 1 3 30 30 H 1.09000 * 109.47100 * 60.00076 * 3 2 1 31 31 H 1.08997 * 109.47749 * 299.99928 * 3 2 1 32 32 H 0.96694 * 114.00419 * 300.00027 * 6 4 3 33 33 H 1.09004 * 109.47250 * 64.99839 * 7 4 3 34 34 H 1.09005 * 109.47069 * 305.00015 * 7 4 3 35 35 H 0.96994 * 119.99831 * 359.97438 * 8 7 4 36 36 H 1.08005 * 119.95480 * 359.97438 * 12 11 9 37 37 H 1.07993 * 119.66771 * 179.71616 * 13 12 11 38 38 H 1.08002 * 119.71786 * 180.02562 * 14 13 12 39 39 H 1.07995 * 120.05544 * 180.02562 * 15 14 13 40 40 H 0.97003 * 120.00596 * 354.83519 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 1 3.9330 0.8531 -0.8427 6 8 4.0468 0.8729 1.2201 7 6 4.0800 2.8794 -0.1263 8 7 5.5400 2.8707 -0.2470 9 6 6.2129 4.0319 -0.3707 10 8 5.6082 5.0869 -0.3816 11 6 7.6821 4.0230 -0.4927 12 6 8.3862 2.8246 -0.4118 13 6 9.7641 2.8215 -0.5209 14 6 10.4616 4.0056 -0.7179 15 6 9.7931 5.2050 -0.8076 16 6 8.3906 5.2357 -0.6988 17 6 7.6967 6.4586 -0.7888 18 1 6.7186 6.4920 -1.2455 19 6 8.2762 7.6325 -0.2852 20 7 9.2509 7.5600 0.5815 21 14 7.6541 9.2996 -0.8538 22 1 8.4192 9.7313 -2.0512 23 1 6.2128 9.1993 -1.1970 24 1 7.8359 10.2933 0.2345 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8899 30 1 1.6767 1.9563 0.8900 31 1 1.6767 1.9564 -0.8899 32 1 3.7618 1.3471 2.0131 33 1 3.7921 3.4459 0.7593 34 1 3.6450 3.3433 -1.0116 35 1 6.0223 2.0292 -0.2378 36 1 7.8554 1.8966 -0.2586 37 1 10.3036 1.8885 -0.4526 38 1 11.5382 3.9852 -0.8014 39 1 10.3440 6.1211 -0.9613 40 1 9.5239 6.6983 0.9335 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601322055.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:52:16 Heat of formation + Delta-G solvation = -116.551649 kcal Electronic energy + Delta-G solvation = -21120.036245 eV Core-core repulsion = 17897.363844 eV Total energy + Delta-G solvation = -3222.672400 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.89114 -39.34646 -38.48522 -35.97669 -35.16246 -34.96448 -32.12225 -31.33211 -30.48377 -27.55925 -26.65423 -24.14516 -23.06671 -22.60141 -22.18606 -21.07363 -19.97830 -18.31589 -17.46991 -17.27787 -16.64955 -16.40896 -16.08337 -15.74820 -15.62340 -15.42025 -15.12455 -14.79354 -14.44038 -14.19924 -13.91864 -13.82614 -13.39481 -12.92165 -12.76821 -12.69337 -12.65638 -12.50281 -12.22386 -12.05742 -11.95139 -11.72044 -11.52247 -11.49561 -10.99663 -10.94711 -10.34787 -10.02926 -9.61756 -9.50645 -9.11014 -6.47295 0.38872 0.89494 1.45732 1.61757 1.76711 2.23590 2.30513 2.37944 2.73385 3.44185 3.55083 3.62562 3.95690 4.03280 4.19505 4.25327 4.26634 4.34148 4.44508 4.61346 4.64736 4.70367 4.84056 4.87340 4.92020 4.98989 5.06723 5.13103 5.25170 5.37336 5.41989 5.47648 5.56508 5.64856 5.70671 5.88649 5.95801 6.19377 6.32547 6.66827 6.74879 6.84729 6.91570 7.58835 8.03567 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.020006 B = 0.004238 C = 0.003600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1399.278784 B = 6605.571992 C = 7775.652967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.117 4.117 3 C -0.144 4.144 4 C 0.111 3.889 5 H 0.108 0.892 6 O -0.567 6.567 7 C 0.091 3.909 8 N -0.724 5.724 9 C 0.555 3.445 10 O -0.581 6.581 11 C -0.284 4.284 12 C -0.042 4.042 13 C -0.244 4.244 14 C -0.072 4.072 15 C -0.226 4.226 16 C 0.095 3.905 17 C -0.511 4.511 18 H 0.080 0.920 19 C -0.003 4.003 20 N -0.818 5.818 21 Si 1.119 2.881 22 H -0.255 1.255 23 H -0.275 1.275 24 H -0.267 1.267 25 H 0.055 0.945 26 H 0.054 0.946 27 H 0.059 0.941 28 H 0.061 0.939 29 H 0.064 0.936 30 H 0.074 0.926 31 H 0.077 0.923 32 H 0.387 0.613 33 H 0.055 0.945 34 H 0.062 0.938 35 H 0.406 0.594 36 H 0.132 0.868 37 H 0.136 0.864 38 H 0.125 0.875 39 H 0.090 0.910 40 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.001 -12.802 -0.528 16.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.155 4.155 3 C -0.182 4.182 4 C 0.052 3.948 5 H 0.125 0.875 6 O -0.375 6.375 7 C -0.033 4.033 8 N -0.378 5.378 9 C 0.348 3.652 10 O -0.463 6.463 11 C -0.289 4.289 12 C -0.060 4.060 13 C -0.263 4.263 14 C -0.090 4.090 15 C -0.245 4.245 16 C 0.091 3.909 17 C -0.539 4.539 18 H 0.098 0.902 19 C -0.218 4.218 20 N -0.442 5.442 21 Si 0.936 3.064 22 H -0.179 1.179 23 H -0.200 1.200 24 H -0.191 1.191 25 H 0.074 0.926 26 H 0.074 0.926 27 H 0.078 0.922 28 H 0.080 0.920 29 H 0.083 0.917 30 H 0.093 0.907 31 H 0.096 0.904 32 H 0.236 0.764 33 H 0.074 0.926 34 H 0.080 0.920 35 H 0.243 0.757 36 H 0.150 0.850 37 H 0.154 0.846 38 H 0.143 0.857 39 H 0.108 0.892 40 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -10.888 -10.875 -0.752 15.407 hybrid contribution -0.109 -1.360 0.312 1.399 sum -10.998 -12.234 -0.440 16.457 Atomic orbital electron populations 1.21781 0.95227 1.02029 1.01953 1.21417 0.96115 0.95496 1.02433 1.22211 0.93589 0.98632 1.03768 1.22093 0.94048 0.90451 0.88247 0.87460 1.86540 1.77539 1.57192 1.16190 1.22098 0.80436 0.99087 1.01685 1.45693 1.07400 1.08312 1.76351 1.18458 0.87966 0.83296 0.75441 1.90654 1.70803 1.32196 1.52599 1.19818 0.92233 0.95474 1.21368 1.21146 0.94749 0.95569 0.94554 1.20815 0.93810 0.97859 1.13856 1.21167 0.99430 0.92464 0.95952 1.21216 0.94287 0.97512 1.11519 1.17913 0.92274 0.93043 0.87634 1.21124 1.05215 0.93649 1.33901 0.90176 1.28494 0.92352 1.08404 0.92588 1.70469 1.22357 1.31193 1.20165 0.82975 0.76520 0.69379 0.77500 1.17942 1.19954 1.19147 0.92621 0.92639 0.92197 0.91991 0.91706 0.90719 0.90402 0.76407 0.92645 0.91990 0.75681 0.85010 0.84581 0.85663 0.89183 0.90506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.90 9.91 71.98 0.71 -1.18 16 2 C -0.12 -1.66 5.83 30.59 0.18 -1.49 16 3 C -0.14 -2.24 4.89 30.60 0.15 -2.09 16 4 C 0.11 2.18 3.00 30.60 0.09 2.27 16 5 H 0.11 2.05 8.14 -2.39 -0.02 2.03 16 6 O -0.57 -11.49 12.82 -148.98 -1.91 -13.40 16 7 C 0.09 2.56 5.31 86.38 0.46 3.02 16 8 N -0.72 -25.11 5.45 -466.37 -2.54 -27.66 16 9 C 0.56 26.38 7.73 86.67 0.67 27.05 16 10 O -0.58 -32.26 13.56 -4.06 -0.06 -32.32 16 11 C -0.28 -14.04 5.92 -19.70 -0.12 -14.16 16 12 C -0.04 -1.68 9.53 22.50 0.21 -1.46 16 13 C -0.24 -9.46 10.03 22.41 0.22 -9.24 16 14 C -0.07 -3.06 10.01 22.26 0.22 -2.84 16 15 C -0.23 -11.60 7.87 22.72 0.18 -11.42 16 16 C 0.10 5.30 5.17 -21.11 -0.11 5.19 16 17 C -0.51 -29.97 7.65 23.41 0.18 -29.79 16 18 H 0.08 4.98 5.92 -2.91 -0.02 4.96 16 19 C 0.00 -0.18 5.04 85.37 0.43 0.25 16 20 N -0.82 -46.21 12.57 21.88 0.28 -45.93 16 21 Si 1.12 47.59 29.98 68.60 2.06 49.64 16 22 H -0.26 -9.91 7.11 99.48 0.71 -9.20 16 23 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 24 H -0.27 -10.80 7.11 99.48 0.71 -10.10 16 25 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 26 H 0.05 0.67 8.14 -2.38 -0.02 0.65 16 27 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 28 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 29 H 0.06 0.98 7.82 -2.39 -0.02 0.96 16 30 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 31 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 32 H 0.39 5.93 9.04 -74.06 -0.67 5.26 16 33 H 0.06 1.65 8.14 -2.38 -0.02 1.63 16 34 H 0.06 1.84 8.14 -2.38 -0.02 1.82 16 35 H 0.41 12.13 6.51 -92.71 -0.60 11.52 16 36 H 0.13 4.20 6.41 -2.91 -0.02 4.18 16 37 H 0.14 4.18 8.06 -2.91 -0.02 4.16 16 38 H 0.13 4.50 8.06 -2.91 -0.02 4.47 16 39 H 0.09 4.82 6.94 -2.91 -0.02 4.80 16 40 H 0.28 16.47 6.55 -92.71 -0.61 15.86 16 Total: -1.00 -70.22 332.21 1.25 -68.97 By element: Atomic # 1 Polarization: 36.63 SS G_CDS: -0.06 Total: 36.57 kcal Atomic # 6 Polarization: -39.36 SS G_CDS: 3.49 Total: -35.88 kcal Atomic # 7 Polarization: -71.32 SS G_CDS: -2.27 Total: -73.59 kcal Atomic # 8 Polarization: -43.75 SS G_CDS: -1.97 Total: -45.71 kcal Atomic # 14 Polarization: 47.59 SS G_CDS: 2.06 Total: 49.64 kcal Total: -70.22 1.25 -68.97 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601322055.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.586 kcal (2) G-P(sol) polarization free energy of solvation -70.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.966 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds