Wall clock time and date at job start Mon Mar 30 2020 02:53:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.46850 * 2 1 4 4 H 1.09003 * 109.47000 * 305.00070 * 3 2 1 5 5 O 1.42896 * 109.47405 * 64.99898 * 3 2 1 6 6 C 1.52997 * 109.46863 * 185.00009 * 3 2 1 7 7 C 1.53000 * 109.47291 * 174.99759 * 6 3 2 8 8 N 1.46501 * 109.47637 * 179.97438 * 7 6 3 9 9 C 1.34773 * 120.00103 * 180.02562 * 8 7 6 10 10 O 1.21606 * 120.00119 * 359.97438 * 9 8 7 11 11 C 1.47428 * 119.99680 * 180.02562 * 9 8 7 12 12 C 1.39223 * 120.28613 * 354.05454 * 11 9 8 13 13 C 1.38224 * 120.09581 * 179.97438 * 12 11 9 14 14 C 1.38825 * 120.67284 * 0.02960 * 13 12 11 15 15 C 1.37597 * 120.57428 * 359.97438 * 14 13 12 16 16 C 1.40711 * 119.87928 * 359.97438 * 15 14 13 17 17 C 1.40891 * 120.32747 * 179.97438 * 16 15 14 18 18 H 1.07996 * 119.99758 * 143.04160 * 17 16 15 19 19 C 1.40268 * 120.00131 * 323.04722 * 17 16 15 20 20 N 1.30634 * 120.00126 * 169.61771 * 19 17 16 21 21 Si 1.86797 * 120.00134 * 349.61231 * 19 17 16 22 22 H 1.48498 * 109.47177 * 86.25334 * 21 19 17 23 23 H 1.48502 * 109.47271 * 206.25589 * 21 19 17 24 24 H 1.48509 * 109.47210 * 326.25390 * 21 19 17 25 25 H 1.09007 * 109.47157 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47536 * 299.99871 * 1 2 3 27 27 H 1.08995 * 109.47457 * 60.00499 * 1 2 3 28 28 H 1.09002 * 109.46886 * 239.99756 * 2 1 3 29 29 H 1.09007 * 109.47073 * 119.99679 * 2 1 3 30 30 H 0.96705 * 113.99675 * 60.00000 * 5 3 2 31 31 H 1.09001 * 109.47486 * 54.99835 * 6 3 2 32 32 H 1.08996 * 109.47350 * 294.99777 * 6 3 2 33 33 H 1.09001 * 109.46793 * 59.99652 * 7 6 3 34 34 H 1.08996 * 109.46938 * 300.00270 * 7 6 3 35 35 H 0.97004 * 119.99370 * 0.02562 * 8 7 6 36 36 H 1.08003 * 119.95159 * 0.26455 * 12 11 9 37 37 H 1.07997 * 119.66416 * 180.02562 * 13 12 11 38 38 H 1.08007 * 119.71273 * 179.97438 * 14 13 12 39 39 H 1.07996 * 120.06496 * 180.02562 * 15 14 13 40 40 H 0.97001 * 120.00057 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6052 1.9816 -0.8418 5 8 1.6619 2.0815 1.2210 6 6 3.5647 1.4444 -0.1257 7 6 4.0644 2.8850 -0.2512 8 7 5.5245 2.8869 -0.3710 9 6 6.1891 4.0530 -0.4933 10 8 5.5768 5.1035 -0.5048 11 6 7.6584 4.0547 -0.6144 12 6 8.3754 2.8690 -0.4795 13 6 9.7529 2.8751 -0.5943 14 6 10.4376 4.0567 -0.8437 15 6 9.7566 5.2444 -0.9818 16 6 8.3541 5.2653 -0.8705 17 6 7.6474 6.4762 -1.0097 18 1 6.6875 6.4873 -1.5045 19 6 8.1905 7.6672 -0.5056 20 7 7.6425 8.8140 -0.8074 21 14 9.6972 7.6134 0.5972 22 1 10.9235 7.6068 -0.2402 23 1 9.7072 8.8073 1.4802 24 1 9.6587 6.3833 1.4284 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5137 -0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8901 30 1 2.0141 1.6543 2.0138 31 1 3.8570 0.8801 -1.0113 32 1 4.0029 0.9837 0.7596 33 1 3.7721 3.4493 0.6344 34 1 3.6263 3.3457 -1.1365 35 1 6.0129 2.0488 -0.3622 36 1 7.8543 1.9423 -0.2896 37 1 10.3021 1.9512 -0.4889 38 1 11.5141 4.0437 -0.9301 39 1 10.2975 6.1587 -1.1761 40 1 8.0179 9.6376 -0.4585 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601326989.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:56 Heat of formation + Delta-G solvation = -84.626565 kcal Electronic energy + Delta-G solvation = -21022.101553 eV Core-core repulsion = 17800.813528 eV Total energy + Delta-G solvation = -3221.288025 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.14426 -38.28209 -36.94914 -34.45842 -33.56649 -33.01179 -31.08109 -30.44532 -29.54005 -25.99671 -25.05634 -22.63077 -21.86465 -21.58078 -20.80075 -19.43528 -17.57137 -16.80427 -16.46860 -16.00440 -15.55928 -15.23363 -14.74491 -14.36983 -14.10017 -14.06582 -13.59081 -13.46132 -12.91269 -12.70290 -12.61488 -12.38656 -12.15128 -11.95551 -11.61480 -11.52344 -11.23961 -11.09710 -10.92187 -10.87089 -10.72971 -10.44816 -10.18469 -10.00144 -9.80258 -9.20622 -8.50199 -8.35528 -7.82833 -7.58158 -6.88682 -4.45272 2.11693 2.59811 3.10188 3.18617 3.29879 3.81961 3.96766 4.04606 4.25687 4.54553 4.61604 4.74206 4.87273 5.03157 5.14698 5.31871 5.40012 5.49326 5.57302 5.66376 5.68595 5.77992 5.89483 5.92882 6.00600 6.03384 6.19014 6.24461 6.44671 6.53021 6.80462 7.10075 7.14190 7.24721 7.39752 7.51545 7.59160 7.76369 8.02221 8.34830 8.49041 8.64782 8.85348 9.38022 10.09615 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.024479 B = 0.003987 C = 0.003560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1143.584967 B = 7021.922640 C = 7862.455789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.155 4.155 3 C 0.109 3.891 4 H 0.101 0.899 5 O -0.557 6.557 6 C -0.163 4.163 7 C 0.128 3.872 8 N -0.751 5.751 9 C 0.559 3.441 10 O -0.525 6.525 11 C -0.248 4.248 12 C -0.042 4.042 13 C -0.256 4.256 14 C -0.065 4.065 15 C -0.231 4.231 16 C 0.117 3.883 17 C -0.396 4.396 18 H 0.116 0.884 19 C 0.079 3.921 20 N -0.795 5.795 21 Si 0.912 3.088 22 H -0.266 1.266 23 H -0.289 1.289 24 H -0.247 1.247 25 H 0.051 0.949 26 H 0.060 0.940 27 H 0.054 0.946 28 H 0.071 0.929 29 H 0.064 0.936 30 H 0.373 0.627 31 H 0.076 0.924 32 H 0.070 0.930 33 H 0.067 0.933 34 H 0.059 0.941 35 H 0.390 0.610 36 H 0.094 0.906 37 H 0.096 0.904 38 H 0.096 0.904 39 H 0.108 0.892 40 H 0.287 0.713 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.036 -15.269 2.540 16.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.193 4.193 3 C 0.049 3.951 4 H 0.119 0.881 5 O -0.362 6.362 6 C -0.201 4.201 7 C 0.004 3.996 8 N -0.406 5.406 9 C 0.351 3.649 10 O -0.402 6.402 11 C -0.253 4.253 12 C -0.061 4.061 13 C -0.275 4.275 14 C -0.083 4.083 15 C -0.250 4.250 16 C 0.112 3.888 17 C -0.423 4.423 18 H 0.134 0.866 19 C -0.141 4.141 20 N -0.418 5.418 21 Si 0.738 3.262 22 H -0.192 1.192 23 H -0.216 1.216 24 H -0.170 1.170 25 H 0.070 0.930 26 H 0.080 0.920 27 H 0.073 0.927 28 H 0.089 0.911 29 H 0.083 0.917 30 H 0.220 0.780 31 H 0.094 0.906 32 H 0.088 0.912 33 H 0.085 0.915 34 H 0.077 0.923 35 H 0.224 0.776 36 H 0.112 0.888 37 H 0.114 0.886 38 H 0.114 0.886 39 H 0.126 0.874 40 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -6.889 -13.768 2.108 15.539 hybrid contribution 1.279 -0.834 0.780 1.715 sum -5.610 -14.603 2.888 15.908 Atomic orbital electron populations 1.21709 0.95169 1.01294 1.02521 1.22243 0.97102 0.97263 1.02698 1.21914 0.92536 0.92595 0.88061 0.88115 1.86626 1.76786 1.57282 1.15552 1.22527 0.96710 0.97769 1.03095 1.21064 0.81122 0.95249 1.02171 1.46032 1.06530 1.09206 1.78815 1.18368 0.87914 0.82642 0.75939 1.90766 1.69506 1.30563 1.49339 1.19465 0.91268 0.95113 1.19437 1.20771 0.94150 0.95289 0.95873 1.20287 0.93846 0.96981 1.16395 1.20749 0.97749 0.93160 0.96668 1.21275 0.94875 0.97237 1.11629 1.17557 0.90854 0.92637 0.87753 1.19985 1.05900 0.88728 1.27722 0.86641 1.26332 0.97478 0.94581 0.95736 1.69568 1.37919 0.99076 1.35242 0.86367 0.80723 0.78746 0.80378 1.19206 1.21639 1.17045 0.93003 0.92044 0.92680 0.91054 0.91700 0.78049 0.90556 0.91163 0.91463 0.92250 0.77649 0.88762 0.88563 0.88572 0.87408 0.90258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.13 9.81 37.16 0.36 -0.76 16 2 C -0.16 -1.15 5.61 -26.73 -0.15 -1.30 16 3 C 0.11 1.02 2.97 -26.73 -0.08 0.94 16 4 H 0.10 1.03 8.14 -51.93 -0.42 0.60 16 5 O -0.56 -5.97 12.41 -35.23 -0.44 -6.40 16 6 C -0.16 -1.64 5.01 -26.73 -0.13 -1.77 16 7 C 0.13 1.94 5.57 -4.04 -0.02 1.91 16 8 N -0.75 -13.02 5.50 -61.38 -0.34 -13.36 16 9 C 0.56 12.96 7.72 -12.52 -0.10 12.86 16 10 O -0.52 -14.38 13.65 5.27 0.07 -14.30 16 11 C -0.25 -5.88 5.92 -104.37 -0.62 -6.50 16 12 C -0.04 -0.84 9.52 -39.22 -0.37 -1.21 16 13 C -0.26 -5.03 10.03 -39.37 -0.39 -5.42 16 14 C -0.06 -1.35 10.01 -39.60 -0.40 -1.75 16 15 C -0.23 -5.51 7.18 -38.88 -0.28 -5.79 16 16 C 0.12 3.05 5.02 -106.54 -0.53 2.51 16 17 C -0.40 -11.31 8.12 -37.82 -0.31 -11.62 16 18 H 0.12 3.65 6.29 -52.49 -0.33 3.32 16 19 C 0.08 2.14 5.47 -17.30 -0.09 2.05 16 20 N -0.79 -21.95 13.92 55.56 0.77 -21.18 16 21 Si 0.91 21.18 24.58 -169.99 -4.18 17.00 16 22 H -0.27 -5.84 6.45 56.52 0.36 -5.47 16 23 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 24 H -0.25 -5.91 7.04 56.52 0.40 -5.51 16 25 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 26 H 0.06 0.50 7.82 -51.93 -0.41 0.10 16 27 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 29 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 30 H 0.37 2.72 9.05 45.56 0.41 3.14 16 31 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.07 1.14 7.82 -51.93 -0.41 0.73 16 34 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 35 H 0.39 5.60 6.54 -40.82 -0.27 5.33 16 36 H 0.09 1.51 6.44 -52.48 -0.34 1.17 16 37 H 0.10 1.60 8.06 -52.49 -0.42 1.18 16 38 H 0.10 1.71 8.06 -52.48 -0.42 1.29 16 39 H 0.11 2.54 4.91 -52.49 -0.26 2.28 16 40 H 0.29 7.11 8.29 -40.82 -0.34 6.77 16 LS Contribution 327.03 15.07 4.93 4.93 Total: -1.00 -31.98 327.03 -7.29 -39.27 By element: Atomic # 1 Polarization: 14.88 SS G_CDS: -5.00 Total: 9.89 kcal Atomic # 6 Polarization: -12.73 SS G_CDS: -3.12 Total: -15.84 kcal Atomic # 7 Polarization: -34.97 SS G_CDS: 0.44 Total: -34.53 kcal Atomic # 8 Polarization: -20.34 SS G_CDS: -0.37 Total: -20.71 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -4.18 Total: 17.00 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -31.98 -7.29 -39.27 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601326989.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.353 kcal (2) G-P(sol) polarization free energy of solvation -31.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.274 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds