Wall clock time and date at job start Mon Mar 30 2020 02:53:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.46850 * 2 1 4 4 H 1.09003 * 109.47000 * 305.00070 * 3 2 1 5 5 O 1.42896 * 109.47405 * 64.99898 * 3 2 1 6 6 C 1.52997 * 109.46863 * 185.00009 * 3 2 1 7 7 C 1.53000 * 109.47291 * 174.99759 * 6 3 2 8 8 N 1.46501 * 109.47637 * 179.97438 * 7 6 3 9 9 C 1.34773 * 120.00103 * 180.02562 * 8 7 6 10 10 O 1.21606 * 120.00119 * 359.97438 * 9 8 7 11 11 C 1.47428 * 119.99680 * 180.02562 * 9 8 7 12 12 C 1.39223 * 120.28613 * 354.05454 * 11 9 8 13 13 C 1.38224 * 120.09581 * 179.97438 * 12 11 9 14 14 C 1.38825 * 120.67284 * 0.02960 * 13 12 11 15 15 C 1.37597 * 120.57428 * 359.97438 * 14 13 12 16 16 C 1.40711 * 119.87928 * 359.97438 * 15 14 13 17 17 C 1.40891 * 120.32747 * 179.97438 * 16 15 14 18 18 H 1.07996 * 119.99758 * 143.04160 * 17 16 15 19 19 C 1.40268 * 120.00131 * 323.04722 * 17 16 15 20 20 N 1.30634 * 120.00126 * 169.61771 * 19 17 16 21 21 Si 1.86797 * 120.00134 * 349.61231 * 19 17 16 22 22 H 1.48498 * 109.47177 * 86.25334 * 21 19 17 23 23 H 1.48502 * 109.47271 * 206.25589 * 21 19 17 24 24 H 1.48509 * 109.47210 * 326.25390 * 21 19 17 25 25 H 1.09007 * 109.47157 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47536 * 299.99871 * 1 2 3 27 27 H 1.08995 * 109.47457 * 60.00499 * 1 2 3 28 28 H 1.09002 * 109.46886 * 239.99756 * 2 1 3 29 29 H 1.09007 * 109.47073 * 119.99679 * 2 1 3 30 30 H 0.96705 * 113.99675 * 60.00000 * 5 3 2 31 31 H 1.09001 * 109.47486 * 54.99835 * 6 3 2 32 32 H 1.08996 * 109.47350 * 294.99777 * 6 3 2 33 33 H 1.09001 * 109.46793 * 59.99652 * 7 6 3 34 34 H 1.08996 * 109.46938 * 300.00270 * 7 6 3 35 35 H 0.97004 * 119.99370 * 0.02562 * 8 7 6 36 36 H 1.08003 * 119.95159 * 0.26455 * 12 11 9 37 37 H 1.07997 * 119.66416 * 180.02562 * 13 12 11 38 38 H 1.08007 * 119.71273 * 179.97438 * 14 13 12 39 39 H 1.07996 * 120.06496 * 180.02562 * 15 14 13 40 40 H 0.97001 * 120.00057 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6052 1.9816 -0.8418 5 8 1.6619 2.0815 1.2210 6 6 3.5647 1.4444 -0.1257 7 6 4.0644 2.8850 -0.2512 8 7 5.5245 2.8869 -0.3710 9 6 6.1891 4.0530 -0.4933 10 8 5.5768 5.1035 -0.5048 11 6 7.6584 4.0547 -0.6144 12 6 8.3754 2.8690 -0.4795 13 6 9.7529 2.8751 -0.5943 14 6 10.4376 4.0567 -0.8437 15 6 9.7566 5.2444 -0.9818 16 6 8.3541 5.2653 -0.8705 17 6 7.6474 6.4762 -1.0097 18 1 6.6875 6.4873 -1.5045 19 6 8.1905 7.6672 -0.5056 20 7 7.6425 8.8140 -0.8074 21 14 9.6972 7.6134 0.5972 22 1 10.9235 7.6068 -0.2402 23 1 9.7072 8.8073 1.4802 24 1 9.6587 6.3833 1.4284 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5137 -0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8901 30 1 2.0141 1.6543 2.0138 31 1 3.8570 0.8801 -1.0113 32 1 4.0029 0.9837 0.7596 33 1 3.7721 3.4493 0.6344 34 1 3.6263 3.3457 -1.1365 35 1 6.0129 2.0488 -0.3622 36 1 7.8543 1.9423 -0.2896 37 1 10.3021 1.9512 -0.4889 38 1 11.5141 4.0437 -0.9301 39 1 10.2975 6.1587 -1.1761 40 1 8.0179 9.6376 -0.4585 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601326989.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:55 Heat of formation + Delta-G solvation = -109.332880 kcal Electronic energy + Delta-G solvation = -21023.172899 eV Core-core repulsion = 17800.813528 eV Total energy + Delta-G solvation = -3222.359371 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.84300 -39.27084 -38.61464 -36.04088 -35.39149 -33.75141 -32.50439 -32.28100 -30.92785 -27.47033 -26.49570 -24.12338 -23.21947 -22.48665 -22.27700 -21.11014 -19.46199 -18.39877 -17.34850 -17.21178 -16.87396 -16.80988 -16.06640 -15.79687 -15.74979 -15.55073 -14.99617 -14.73590 -14.50571 -14.12925 -13.97182 -13.73672 -13.46635 -13.25009 -12.88354 -12.65790 -12.59791 -12.47976 -12.22262 -12.18424 -12.00475 -11.80226 -11.64462 -11.63360 -11.04141 -10.88439 -10.34449 -9.99750 -9.53180 -9.40882 -8.83197 -6.47940 0.34143 0.82628 1.22530 1.36444 1.45300 2.09447 2.26244 2.41225 2.70857 3.50610 3.52955 3.77483 3.94278 4.09641 4.21461 4.27409 4.28958 4.35824 4.46314 4.57922 4.66528 4.71962 4.78414 4.84270 4.96180 5.00803 5.05270 5.12725 5.14057 5.29970 5.36440 5.42946 5.46720 5.63017 5.68884 5.86737 5.95654 6.26642 6.45219 6.67081 6.78004 6.90316 6.91722 7.63931 8.23068 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.024479 B = 0.003987 C = 0.003560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1143.584967 B = 7021.922640 C = 7862.455789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.146 4.146 3 C 0.108 3.892 4 H 0.085 0.915 5 O -0.580 6.580 6 C -0.146 4.146 7 C 0.127 3.873 8 N -0.725 5.725 9 C 0.549 3.451 10 O -0.581 6.581 11 C -0.266 4.266 12 C -0.039 4.039 13 C -0.229 4.229 14 C -0.061 4.061 15 C -0.252 4.252 16 C 0.099 3.901 17 C -0.447 4.447 18 H 0.060 0.940 19 C 0.034 3.966 20 N -0.853 5.853 21 Si 0.972 3.028 22 H -0.242 1.242 23 H -0.279 1.279 24 H -0.256 1.256 25 H 0.064 0.936 26 H 0.050 0.950 27 H 0.047 0.953 28 H 0.083 0.917 29 H 0.080 0.920 30 H 0.387 0.613 31 H 0.096 0.904 32 H 0.093 0.907 33 H 0.044 0.956 34 H 0.038 0.962 35 H 0.409 0.591 36 H 0.143 0.857 37 H 0.147 0.853 38 H 0.138 0.862 39 H 0.105 0.895 40 H 0.293 0.707 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.537 -20.234 3.602 20.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.184 4.184 3 C 0.048 3.952 4 H 0.103 0.897 5 O -0.388 6.388 6 C -0.184 4.184 7 C 0.003 3.997 8 N -0.380 5.380 9 C 0.341 3.659 10 O -0.461 6.461 11 C -0.271 4.271 12 C -0.057 4.057 13 C -0.247 4.247 14 C -0.079 4.079 15 C -0.271 4.271 16 C 0.095 3.905 17 C -0.476 4.476 18 H 0.078 0.922 19 C -0.180 4.180 20 N -0.480 5.480 21 Si 0.794 3.206 22 H -0.166 1.166 23 H -0.206 1.206 24 H -0.180 1.180 25 H 0.083 0.917 26 H 0.070 0.930 27 H 0.067 0.933 28 H 0.102 0.898 29 H 0.099 0.901 30 H 0.236 0.764 31 H 0.114 0.886 32 H 0.111 0.889 33 H 0.063 0.937 34 H 0.056 0.944 35 H 0.247 0.753 36 H 0.161 0.839 37 H 0.165 0.835 38 H 0.156 0.844 39 H 0.123 0.877 40 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -4.384 -18.811 3.166 19.573 hybrid contribution 0.482 0.328 0.427 0.722 sum -3.902 -18.483 3.593 19.229 Atomic orbital electron populations 1.21718 0.95528 1.01879 1.01737 1.22164 0.96709 0.95486 1.04028 1.21922 0.92011 0.93929 0.87290 0.89683 1.86600 1.77225 1.58330 1.16618 1.22445 0.96975 0.93868 1.05076 1.21174 0.79574 0.98800 1.00173 1.45759 1.07485 1.08250 1.76476 1.18638 0.88349 0.83345 0.75560 1.90764 1.70540 1.33074 1.51765 1.19857 0.91878 0.96089 1.19238 1.21251 0.94826 0.95471 0.94165 1.20982 0.93753 0.98375 1.11637 1.21282 1.00018 0.92180 0.94414 1.21369 0.93853 0.98904 1.12944 1.17832 0.92389 0.92615 0.87660 1.19736 1.04843 0.91249 1.31740 0.92172 1.27100 1.00362 0.93805 0.96684 1.69630 1.40454 0.99785 1.38125 0.85465 0.78089 0.78383 0.78653 1.16633 1.20573 1.18010 0.91689 0.93049 0.93347 0.89819 0.90148 0.76401 0.88559 0.88883 0.93717 0.94375 0.75306 0.83908 0.83515 0.84448 0.87737 0.89680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.02 9.81 71.98 0.71 -1.32 16 2 C -0.15 -1.74 5.61 30.59 0.17 -1.57 16 3 C 0.11 1.88 2.97 30.59 0.09 1.97 16 4 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 5 O -0.58 -12.01 12.41 -148.98 -1.85 -13.86 16 6 C -0.15 -2.55 5.01 30.59 0.15 -2.39 16 7 C 0.13 3.82 5.57 86.38 0.48 4.30 16 8 N -0.72 -24.28 5.50 -466.37 -2.57 -26.85 16 9 C 0.55 26.09 7.72 86.66 0.67 26.75 16 10 O -0.58 -34.35 13.65 -4.05 -0.06 -34.41 16 11 C -0.27 -12.43 5.92 -19.70 -0.12 -12.55 16 12 C -0.04 -1.35 9.52 22.50 0.21 -1.14 16 13 C -0.23 -7.44 10.03 22.41 0.22 -7.22 16 14 C -0.06 -2.23 10.01 22.26 0.22 -2.00 16 15 C -0.25 -11.63 7.18 22.72 0.16 -11.46 16 16 C 0.10 5.28 5.02 -21.11 -0.11 5.17 16 17 C -0.45 -27.56 8.12 23.41 0.19 -27.37 16 18 H 0.06 4.26 6.29 -2.91 -0.02 4.24 16 19 C 0.03 1.96 5.47 85.36 0.47 2.42 16 20 N -0.85 -51.13 13.92 21.88 0.30 -50.83 16 21 Si 0.97 44.87 24.58 68.60 1.69 46.55 16 22 H -0.24 -10.05 6.45 99.48 0.64 -9.40 16 23 H -0.28 -12.17 7.11 99.48 0.71 -11.47 16 24 H -0.26 -11.97 7.04 99.48 0.70 -11.27 16 25 H 0.06 0.70 8.14 -2.38 -0.02 0.68 16 26 H 0.05 0.79 7.82 -2.39 -0.02 0.77 16 27 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 28 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 29 H 0.08 0.75 8.14 -2.38 -0.02 0.73 16 30 H 0.39 5.08 9.05 -74.05 -0.67 4.41 16 31 H 0.10 1.36 8.14 -2.39 -0.02 1.35 16 32 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 33 H 0.04 1.57 7.82 -2.39 -0.02 1.55 16 34 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16 35 H 0.41 10.18 6.54 -92.71 -0.61 9.57 16 36 H 0.14 3.58 6.44 -2.91 -0.02 3.56 16 37 H 0.15 3.48 8.06 -2.91 -0.02 3.46 16 38 H 0.14 3.96 8.06 -2.91 -0.02 3.94 16 39 H 0.10 4.82 4.91 -2.91 -0.01 4.81 16 40 H 0.29 15.66 8.29 -92.71 -0.77 14.89 16 Total: -1.00 -79.02 327.03 0.76 -78.25 By element: Atomic # 1 Polarization: 27.84 SS G_CDS: -0.29 Total: 27.55 kcal Atomic # 6 Polarization: -29.94 SS G_CDS: 3.53 Total: -26.41 kcal Atomic # 7 Polarization: -75.42 SS G_CDS: -2.26 Total: -77.68 kcal Atomic # 8 Polarization: -46.36 SS G_CDS: -1.90 Total: -48.27 kcal Atomic # 14 Polarization: 44.87 SS G_CDS: 1.69 Total: 46.55 kcal Total: -79.02 0.76 -78.25 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601326989.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.081 kcal (2) G-P(sol) polarization free energy of solvation -79.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.252 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds