Wall clock time and date at job start Mon Mar 30 2020 02:53:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.47109 * 2 1 4 4 H 1.08995 * 109.47212 * 55.00007 * 3 2 1 5 5 O 1.42901 * 109.46758 * 295.00035 * 3 2 1 6 6 C 1.53002 * 109.47395 * 175.00110 * 3 2 1 7 7 C 1.53000 * 109.47268 * 185.00083 * 6 3 2 8 8 N 1.46497 * 109.47087 * 179.97438 * 7 6 3 9 9 C 1.34774 * 120.00234 * 179.97438 * 8 7 6 10 10 O 1.21618 * 119.99610 * 359.97438 * 9 8 7 11 11 C 1.47428 * 120.00477 * 180.02562 * 9 8 7 12 12 C 1.39232 * 120.28208 * 357.04743 * 11 9 8 13 13 C 1.38217 * 120.09197 * 180.28466 * 12 11 9 14 14 C 1.38826 * 120.68006 * 359.71249 * 13 12 11 15 15 C 1.37600 * 120.56680 * 359.97438 * 14 13 12 16 16 C 1.40709 * 119.88058 * 0.02562 * 15 14 13 17 17 C 1.40892 * 120.32698 * 180.02562 * 16 15 14 18 18 H 1.07993 * 120.00405 * 145.84398 * 17 16 15 19 19 C 1.40277 * 119.99993 * 325.84525 * 17 16 15 20 20 N 1.30635 * 119.99643 * 340.94173 * 19 17 16 21 21 Si 1.86791 * 120.00406 * 160.94462 * 19 17 16 22 22 H 1.48498 * 109.47690 * 180.02562 * 21 19 17 23 23 H 1.48507 * 109.47328 * 300.00333 * 21 19 17 24 24 H 1.48504 * 109.47177 * 59.99546 * 21 19 17 25 25 H 1.09002 * 109.47027 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47048 * 299.99680 * 1 2 3 27 27 H 1.09000 * 109.47129 * 60.00359 * 1 2 3 28 28 H 1.09006 * 109.47450 * 239.99809 * 2 1 3 29 29 H 1.09003 * 109.47631 * 119.99675 * 2 1 3 30 30 H 0.96700 * 114.00261 * 299.99503 * 5 3 2 31 31 H 1.09000 * 109.47208 * 64.99345 * 6 3 2 32 32 H 1.09002 * 109.46773 * 305.00297 * 6 3 2 33 33 H 1.08997 * 109.47147 * 59.99710 * 7 6 3 34 34 H 1.09003 * 109.46728 * 299.99500 * 7 6 3 35 35 H 0.97004 * 120.00040 * 0.02562 * 8 7 6 36 36 H 1.07997 * 119.94959 * 359.97438 * 12 11 9 37 37 H 1.07997 * 119.66279 * 179.73914 * 13 12 11 38 38 H 1.07994 * 119.72040 * 180.02562 * 14 13 12 39 39 H 1.07999 * 120.05892 * 180.02562 * 15 14 13 40 40 H 0.96993 * 120.00043 * 354.76364 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 8 1.6619 2.0813 -1.2211 6 6 3.5648 1.4444 0.1257 7 6 4.0644 2.8851 0.2511 8 7 5.5244 2.8868 0.3721 9 6 6.1891 4.0528 0.4946 10 8 5.5768 5.1036 0.5043 11 6 7.6584 4.0547 0.6158 12 6 8.3602 2.8532 0.6660 13 6 9.7372 2.8595 0.7856 14 6 10.4371 4.0567 0.8509 15 6 9.7718 5.2600 0.7972 16 6 8.3702 5.2813 0.6757 17 6 7.6795 6.5080 0.6193 18 1 6.7890 6.5992 0.0153 19 6 8.1487 7.6111 1.3479 20 7 8.9725 7.4322 2.3458 21 14 7.5954 9.3358 0.8913 22 1 8.2293 10.3179 1.8072 23 1 7.9991 9.6314 -0.5069 24 1 6.1181 9.4294 1.0101 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.8934 -0.5139 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 2.0141 1.6542 -2.0139 31 1 4.0029 0.9836 -0.7596 32 1 3.8570 0.8801 1.0113 33 1 3.6263 3.3458 1.1364 34 1 3.7722 3.4493 -0.6346 35 1 6.0128 2.0488 0.3632 36 1 7.8274 1.9151 0.6166 37 1 10.2742 1.9235 0.8282 38 1 11.5129 4.0435 0.9438 39 1 10.3246 6.1864 0.8484 40 1 9.2004 6.5337 2.6314 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601326990.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:59 Heat of formation + Delta-G solvation = -94.284436 kcal Electronic energy + Delta-G solvation = -20997.784590 eV Core-core repulsion = 17776.077769 eV Total energy + Delta-G solvation = -3221.706822 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.12450 -38.28702 -36.93452 -34.49446 -33.81905 -33.02829 -30.98721 -29.72643 -29.20688 -25.96981 -24.97661 -22.68513 -21.68944 -21.59999 -20.81840 -19.44291 -18.06807 -16.65076 -16.42973 -15.94625 -15.54854 -14.79185 -14.71748 -14.39961 -14.08552 -13.92550 -13.66496 -13.48167 -12.90712 -12.70662 -12.53326 -12.27348 -12.11253 -11.80864 -11.60663 -11.25585 -11.19446 -11.09221 -10.91265 -10.87897 -10.73702 -10.34917 -10.15593 -10.11524 -9.59226 -9.06660 -8.48296 -8.36370 -7.78628 -7.60053 -7.13452 -4.45346 2.25051 2.74211 3.22143 3.32664 3.42879 3.82490 4.05743 4.09245 4.23945 4.53323 4.65408 4.72568 4.85765 5.01523 5.13167 5.30412 5.45384 5.49005 5.55790 5.64793 5.67303 5.85443 5.88988 5.97303 5.99136 6.13091 6.17669 6.26908 6.53121 6.71937 6.99413 7.13425 7.28497 7.49216 7.49577 7.61770 7.72385 7.89731 8.10160 8.22290 8.39145 8.74216 8.87220 9.38605 10.05286 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.019596 B = 0.004095 C = 0.003480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1428.505133 B = 6836.319311 C = 8044.093060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.155 4.155 3 C 0.109 3.891 4 H 0.101 0.899 5 O -0.558 6.558 6 C -0.163 4.163 7 C 0.129 3.871 8 N -0.751 5.751 9 C 0.562 3.438 10 O -0.536 6.536 11 C -0.265 4.265 12 C -0.044 4.044 13 C -0.261 4.261 14 C -0.076 4.076 15 C -0.201 4.201 16 C 0.120 3.880 17 C -0.466 4.466 18 H 0.106 0.894 19 C 0.031 3.969 20 N -0.794 5.794 21 Si 1.071 2.929 22 H -0.275 1.275 23 H -0.274 1.274 24 H -0.272 1.272 25 H 0.051 0.949 26 H 0.054 0.946 27 H 0.061 0.939 28 H 0.064 0.936 29 H 0.071 0.929 30 H 0.373 0.627 31 H 0.070 0.930 32 H 0.076 0.924 33 H 0.058 0.942 34 H 0.066 0.934 35 H 0.390 0.610 36 H 0.090 0.910 37 H 0.093 0.907 38 H 0.093 0.907 39 H 0.107 0.893 40 H 0.298 0.702 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.240 -12.256 -3.649 15.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.193 4.193 3 C 0.049 3.951 4 H 0.119 0.881 5 O -0.363 6.363 6 C -0.201 4.201 7 C 0.005 3.995 8 N -0.406 5.406 9 C 0.355 3.645 10 O -0.415 6.415 11 C -0.270 4.270 12 C -0.063 4.063 13 C -0.280 4.280 14 C -0.095 4.095 15 C -0.220 4.220 16 C 0.116 3.884 17 C -0.493 4.493 18 H 0.123 0.877 19 C -0.191 4.191 20 N -0.417 5.417 21 Si 0.894 3.106 22 H -0.199 1.199 23 H -0.199 1.199 24 H -0.197 1.197 25 H 0.070 0.930 26 H 0.073 0.927 27 H 0.080 0.920 28 H 0.083 0.917 29 H 0.089 0.911 30 H 0.220 0.780 31 H 0.088 0.912 32 H 0.094 0.906 33 H 0.076 0.924 34 H 0.085 0.915 35 H 0.224 0.776 36 H 0.108 0.892 37 H 0.111 0.889 38 H 0.111 0.889 39 H 0.125 0.875 40 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -9.778 -9.467 -2.793 13.894 hybrid contribution 0.521 -2.794 -0.592 2.903 sum -9.257 -12.262 -3.384 15.732 Atomic orbital electron populations 1.21707 0.95151 1.01312 1.02506 1.22243 0.97112 0.97246 1.02721 1.21912 0.92518 0.92614 0.88028 0.88137 1.86619 1.76790 1.57306 1.15562 1.22529 0.96711 0.97771 1.03108 1.21050 0.81229 0.95240 1.02029 1.46030 1.06483 1.09303 1.78788 1.18383 0.87959 0.82472 0.75639 1.90684 1.69778 1.30747 1.50260 1.19410 0.90643 0.93947 1.23029 1.20705 0.94163 0.95176 0.96213 1.20235 0.93833 0.96392 1.17533 1.20740 0.97650 0.93108 0.97997 1.21258 0.94263 0.96555 1.09937 1.17508 0.91063 0.91971 0.87893 1.21198 1.10914 0.94031 1.23159 0.87660 1.27284 0.92377 1.06356 0.93044 1.70389 1.22969 1.29212 1.19156 0.83555 0.77362 0.72685 0.77021 1.19942 1.19942 1.19749 0.92982 0.92695 0.92037 0.91683 0.91052 0.78037 0.91152 0.90578 0.92368 0.91538 0.77644 0.89188 0.88928 0.88879 0.87513 0.88822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.13 9.81 37.16 0.36 -0.76 16 2 C -0.16 -1.16 5.61 -26.73 -0.15 -1.31 16 3 C 0.11 1.04 2.97 -26.73 -0.08 0.96 16 4 H 0.10 1.03 8.14 -51.93 -0.42 0.61 16 5 O -0.56 -5.94 12.41 -35.23 -0.44 -6.37 16 6 C -0.16 -1.68 5.01 -26.73 -0.13 -1.81 16 7 C 0.13 1.97 5.57 -4.04 -0.02 1.95 16 8 N -0.75 -13.43 5.51 -61.38 -0.34 -13.76 16 9 C 0.56 13.30 7.73 -12.52 -0.10 13.20 16 10 O -0.54 -14.60 13.55 5.26 0.07 -14.53 16 11 C -0.27 -6.53 5.92 -104.37 -0.62 -7.15 16 12 C -0.04 -0.92 9.53 -39.22 -0.37 -1.30 16 13 C -0.26 -5.47 10.03 -39.37 -0.39 -5.87 16 14 C -0.08 -1.69 10.01 -39.60 -0.40 -2.09 16 15 C -0.20 -5.06 7.86 -38.88 -0.31 -5.36 16 16 C 0.12 3.24 5.18 -106.54 -0.55 2.69 16 17 C -0.47 -13.02 7.66 -37.81 -0.29 -13.31 16 18 H 0.11 3.08 5.91 -52.49 -0.31 2.77 16 19 C 0.03 0.82 5.04 -17.29 -0.09 0.73 16 20 N -0.79 -21.51 12.57 55.56 0.70 -20.81 16 21 Si 1.07 22.87 29.98 -169.99 -5.10 17.77 16 22 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 23 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 24 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 25 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 26 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.06 0.50 7.82 -51.93 -0.41 0.09 16 28 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 30 H 0.37 2.71 9.05 45.56 0.41 3.12 16 31 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 34 H 0.07 1.12 7.82 -51.93 -0.41 0.72 16 35 H 0.39 5.91 6.51 -40.82 -0.27 5.64 16 36 H 0.09 1.56 6.41 -52.49 -0.34 1.22 16 37 H 0.09 1.68 8.06 -52.49 -0.42 1.25 16 38 H 0.09 1.81 8.06 -52.49 -0.42 1.38 16 39 H 0.11 2.73 6.93 -52.49 -0.36 2.37 16 40 H 0.30 8.25 6.54 -40.82 -0.27 7.98 16 LS Contribution 331.50 15.07 5.00 5.00 Total: -1.00 -31.52 331.50 -8.21 -39.72 By element: Atomic # 1 Polarization: 17.40 SS G_CDS: -4.97 Total: 12.44 kcal Atomic # 6 Polarization: -16.31 SS G_CDS: -3.14 Total: -19.45 kcal Atomic # 7 Polarization: -34.94 SS G_CDS: 0.36 Total: -34.58 kcal Atomic # 8 Polarization: -20.53 SS G_CDS: -0.37 Total: -20.90 kcal Atomic # 14 Polarization: 22.87 SS G_CDS: -5.10 Total: 17.77 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -31.52 -8.21 -39.72 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601326990.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.559 kcal (2) G-P(sol) polarization free energy of solvation -31.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.725 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds