Wall clock time and date at job start Mon Mar 30 2020 02:53:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.47109 * 2 1 4 4 H 1.08995 * 109.47212 * 55.00007 * 3 2 1 5 5 O 1.42901 * 109.46758 * 295.00035 * 3 2 1 6 6 C 1.53002 * 109.47395 * 175.00110 * 3 2 1 7 7 C 1.53000 * 109.47268 * 185.00083 * 6 3 2 8 8 N 1.46497 * 109.47087 * 179.97438 * 7 6 3 9 9 C 1.34774 * 120.00234 * 179.97438 * 8 7 6 10 10 O 1.21618 * 119.99610 * 359.97438 * 9 8 7 11 11 C 1.47428 * 120.00477 * 180.02562 * 9 8 7 12 12 C 1.39232 * 120.28208 * 357.04743 * 11 9 8 13 13 C 1.38217 * 120.09197 * 180.28466 * 12 11 9 14 14 C 1.38826 * 120.68006 * 359.71249 * 13 12 11 15 15 C 1.37600 * 120.56680 * 359.97438 * 14 13 12 16 16 C 1.40709 * 119.88058 * 0.02562 * 15 14 13 17 17 C 1.40892 * 120.32698 * 180.02562 * 16 15 14 18 18 H 1.07993 * 120.00405 * 145.84398 * 17 16 15 19 19 C 1.40277 * 119.99993 * 325.84525 * 17 16 15 20 20 N 1.30635 * 119.99643 * 340.94173 * 19 17 16 21 21 Si 1.86791 * 120.00406 * 160.94462 * 19 17 16 22 22 H 1.48498 * 109.47690 * 180.02562 * 21 19 17 23 23 H 1.48507 * 109.47328 * 300.00333 * 21 19 17 24 24 H 1.48504 * 109.47177 * 59.99546 * 21 19 17 25 25 H 1.09002 * 109.47027 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47048 * 299.99680 * 1 2 3 27 27 H 1.09000 * 109.47129 * 60.00359 * 1 2 3 28 28 H 1.09006 * 109.47450 * 239.99809 * 2 1 3 29 29 H 1.09003 * 109.47631 * 119.99675 * 2 1 3 30 30 H 0.96700 * 114.00261 * 299.99503 * 5 3 2 31 31 H 1.09000 * 109.47208 * 64.99345 * 6 3 2 32 32 H 1.09002 * 109.46773 * 305.00297 * 6 3 2 33 33 H 1.08997 * 109.47147 * 59.99710 * 7 6 3 34 34 H 1.09003 * 109.46728 * 299.99500 * 7 6 3 35 35 H 0.97004 * 120.00040 * 0.02562 * 8 7 6 36 36 H 1.07997 * 119.94959 * 359.97438 * 12 11 9 37 37 H 1.07997 * 119.66279 * 179.73914 * 13 12 11 38 38 H 1.07994 * 119.72040 * 180.02562 * 14 13 12 39 39 H 1.07999 * 120.05892 * 180.02562 * 15 14 13 40 40 H 0.96993 * 120.00043 * 354.76364 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 8 1.6619 2.0813 -1.2211 6 6 3.5648 1.4444 0.1257 7 6 4.0644 2.8851 0.2511 8 7 5.5244 2.8868 0.3721 9 6 6.1891 4.0528 0.4946 10 8 5.5768 5.1036 0.5043 11 6 7.6584 4.0547 0.6158 12 6 8.3602 2.8532 0.6660 13 6 9.7372 2.8595 0.7856 14 6 10.4371 4.0567 0.8509 15 6 9.7718 5.2600 0.7972 16 6 8.3702 5.2813 0.6757 17 6 7.6795 6.5080 0.6193 18 1 6.7890 6.5992 0.0153 19 6 8.1487 7.6111 1.3479 20 7 8.9725 7.4322 2.3458 21 14 7.5954 9.3358 0.8913 22 1 8.2293 10.3179 1.8072 23 1 7.9991 9.6314 -0.5069 24 1 6.1181 9.4294 1.0101 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.8934 -0.5139 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 2.0141 1.6542 -2.0139 31 1 4.0029 0.9836 -0.7596 32 1 3.8570 0.8801 1.0113 33 1 3.6263 3.3458 1.1364 34 1 3.7722 3.4493 -0.6346 35 1 6.0128 2.0488 0.3632 36 1 7.8274 1.9151 0.6166 37 1 10.2742 1.9235 0.8282 38 1 11.5129 4.0435 0.9438 39 1 10.3246 6.1864 0.8484 40 1 9.2004 6.5337 2.6314 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601326990.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:58 Heat of formation + Delta-G solvation = -116.443688 kcal Electronic energy + Delta-G solvation = -20998.745488 eV Core-core repulsion = 17776.077769 eV Total energy + Delta-G solvation = -3222.667719 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.84559 -39.29385 -38.64482 -36.15108 -35.56136 -33.75748 -32.43275 -31.45328 -30.82033 -27.41824 -26.49609 -24.18209 -23.06766 -22.53330 -22.34493 -21.16057 -19.95280 -18.17210 -17.34809 -16.99783 -16.88204 -16.51418 -16.13885 -15.80262 -15.77201 -15.42527 -15.20125 -14.68418 -14.40325 -14.03577 -13.91092 -13.68822 -13.46224 -12.93017 -12.89038 -12.72278 -12.53274 -12.49553 -12.21017 -12.03022 -11.95213 -11.81742 -11.66086 -11.48160 -10.97945 -10.88659 -10.33685 -10.01664 -9.61459 -9.50162 -9.11286 -6.47595 0.39265 0.90036 1.45426 1.60987 1.75875 2.24312 2.30119 2.39972 2.73377 3.48672 3.55327 3.75355 3.92737 4.07858 4.19335 4.26416 4.28279 4.33799 4.45532 4.56009 4.64998 4.72945 4.80008 4.87363 4.94648 5.03369 5.10080 5.12046 5.14246 5.34838 5.41802 5.42317 5.58069 5.65036 5.70729 5.89002 5.95966 6.19664 6.33140 6.68677 6.84909 6.88516 6.92329 7.60500 8.03359 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.019596 B = 0.004095 C = 0.003480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1428.505133 B = 6836.319311 C = 8044.093060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.147 4.147 3 C 0.109 3.891 4 H 0.087 0.913 5 O -0.579 6.579 6 C -0.147 4.147 7 C 0.128 3.872 8 N -0.727 5.727 9 C 0.553 3.447 10 O -0.583 6.583 11 C -0.284 4.284 12 C -0.041 4.041 13 C -0.243 4.243 14 C -0.072 4.072 15 C -0.226 4.226 16 C 0.095 3.905 17 C -0.513 4.513 18 H 0.079 0.921 19 C -0.003 4.003 20 N -0.818 5.818 21 Si 1.115 2.885 22 H -0.263 1.263 23 H -0.259 1.259 24 H -0.273 1.273 25 H 0.064 0.936 26 H 0.048 0.952 27 H 0.051 0.949 28 H 0.079 0.921 29 H 0.082 0.918 30 H 0.387 0.613 31 H 0.091 0.909 32 H 0.094 0.906 33 H 0.040 0.960 34 H 0.047 0.953 35 H 0.407 0.593 36 H 0.138 0.862 37 H 0.139 0.861 38 H 0.125 0.875 39 H 0.089 0.911 40 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.866 -15.737 -4.109 18.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.185 4.185 3 C 0.050 3.950 4 H 0.105 0.895 5 O -0.387 6.387 6 C -0.185 4.185 7 C 0.004 3.996 8 N -0.381 5.381 9 C 0.346 3.654 10 O -0.464 6.464 11 C -0.289 4.289 12 C -0.059 4.059 13 C -0.262 4.262 14 C -0.091 4.091 15 C -0.246 4.246 16 C 0.091 3.909 17 C -0.541 4.541 18 H 0.097 0.903 19 C -0.218 4.218 20 N -0.442 5.442 21 Si 0.933 3.067 22 H -0.187 1.187 23 H -0.183 1.183 24 H -0.198 1.198 25 H 0.083 0.917 26 H 0.067 0.933 27 H 0.070 0.930 28 H 0.098 0.902 29 H 0.101 0.899 30 H 0.236 0.764 31 H 0.109 0.891 32 H 0.112 0.888 33 H 0.058 0.942 34 H 0.065 0.935 35 H 0.244 0.756 36 H 0.155 0.845 37 H 0.157 0.843 38 H 0.143 0.857 39 H 0.107 0.893 40 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -9.396 -13.028 -3.269 16.392 hybrid contribution 0.411 -2.024 -0.498 2.124 sum -8.985 -15.053 -3.767 17.931 Atomic orbital electron populations 1.21714 0.95414 1.01888 1.01795 1.22169 0.96803 0.95545 1.03956 1.21906 0.91827 0.93914 0.87356 0.89526 1.86592 1.77197 1.58298 1.16580 1.22453 0.97136 0.93993 1.04917 1.21179 0.79407 0.98736 1.00286 1.45772 1.07595 1.08254 1.76517 1.18520 0.88076 0.83351 0.75447 1.90665 1.70539 1.32878 1.52357 1.19818 0.91626 0.94739 1.22715 1.21162 0.94712 0.95636 0.94412 1.20832 0.93931 0.97590 1.13863 1.21175 0.99493 0.92480 0.95909 1.21215 0.93752 0.97411 1.12196 1.17914 0.92198 0.92828 0.87994 1.21115 1.11307 0.96035 1.25651 0.90310 1.28471 0.91810 1.09390 0.92135 1.70498 1.25379 1.27938 1.20354 0.83029 0.76879 0.69068 0.77758 1.18669 1.18309 1.19839 0.91733 0.93285 0.92956 0.90233 0.89932 0.76403 0.89087 0.88768 0.94203 0.93479 0.75559 0.84453 0.84349 0.85676 0.89276 0.90506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.98 9.81 71.98 0.71 -1.28 16 2 C -0.15 -1.76 5.61 30.59 0.17 -1.59 16 3 C 0.11 1.88 2.97 30.60 0.09 1.97 16 4 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 5 O -0.58 -11.66 12.41 -148.98 -1.85 -13.51 16 6 C -0.15 -2.61 5.01 30.59 0.15 -2.46 16 7 C 0.13 3.82 5.57 86.38 0.48 4.30 16 8 N -0.73 -24.90 5.51 -466.37 -2.57 -27.46 16 9 C 0.55 26.50 7.73 86.66 0.67 27.17 16 10 O -0.58 -33.31 13.55 -4.09 -0.06 -33.37 16 11 C -0.28 -13.93 5.92 -19.70 -0.12 -14.05 16 12 C -0.04 -1.58 9.53 22.50 0.21 -1.36 16 13 C -0.24 -9.10 10.03 22.41 0.22 -8.87 16 14 C -0.07 -3.03 10.01 22.26 0.22 -2.81 16 15 C -0.23 -11.59 7.86 22.72 0.18 -11.41 16 16 C 0.09 5.27 5.18 -21.11 -0.11 5.16 16 17 C -0.51 -30.45 7.66 23.42 0.18 -30.27 16 18 H 0.08 4.97 5.91 -2.91 -0.02 4.95 16 19 C 0.00 -0.16 5.04 85.37 0.43 0.27 16 20 N -0.82 -46.54 12.57 21.88 0.27 -46.27 16 21 Si 1.12 48.33 29.98 68.60 2.06 50.39 16 22 H -0.26 -10.72 7.11 99.48 0.71 -10.01 16 23 H -0.26 -10.41 7.11 99.48 0.71 -9.70 16 24 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 25 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 26 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 27 H 0.05 0.78 7.82 -2.39 -0.02 0.76 16 28 H 0.08 0.75 8.14 -2.38 -0.02 0.73 16 29 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 30 H 0.39 4.93 9.05 -74.06 -0.67 4.26 16 31 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 32 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 33 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 34 H 0.05 1.61 7.82 -2.39 -0.02 1.59 16 35 H 0.41 10.84 6.51 -92.71 -0.60 10.24 16 36 H 0.14 3.96 6.41 -2.91 -0.02 3.94 16 37 H 0.14 4.02 8.06 -2.91 -0.02 4.00 16 38 H 0.13 4.42 8.06 -2.91 -0.02 4.39 16 39 H 0.09 4.78 6.93 -2.91 -0.02 4.76 16 40 H 0.28 16.53 6.54 -92.71 -0.61 15.92 16 Total: -1.00 -74.05 331.50 1.30 -72.75 By element: Atomic # 1 Polarization: 32.74 SS G_CDS: -0.05 Total: 32.69 kcal Atomic # 6 Polarization: -38.72 SS G_CDS: 3.50 Total: -35.22 kcal Atomic # 7 Polarization: -71.44 SS G_CDS: -2.29 Total: -73.73 kcal Atomic # 8 Polarization: -44.97 SS G_CDS: -1.90 Total: -46.88 kcal Atomic # 14 Polarization: 48.33 SS G_CDS: 2.06 Total: 50.39 kcal Total: -74.05 1.30 -72.75 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601326990.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.694 kcal (2) G-P(sol) polarization free energy of solvation -74.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.750 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds