Wall clock time and date at job start Mon Mar 30 2020 02:56:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52998 * 109.46571 * 2 1 4 4 H 1.08994 * 109.47840 * 305.00042 * 3 2 1 5 5 C 1.52997 * 109.47246 * 184.99760 * 3 2 1 6 6 C 1.53000 * 109.47658 * 175.00355 * 5 3 2 7 7 O 1.42903 * 109.47107 * 180.02562 * 6 5 3 8 8 N 1.46502 * 109.47034 * 65.00263 * 3 2 1 9 9 C 1.34778 * 119.99684 * 274.99523 * 8 3 2 10 10 O 1.21612 * 120.00354 * 0.02562 * 9 8 3 11 11 C 1.47433 * 119.99875 * 179.72542 * 9 8 3 12 12 C 1.39224 * 120.28187 * 354.43459 * 11 9 8 13 13 C 1.38227 * 120.09224 * 179.97438 * 12 11 9 14 14 C 1.38829 * 120.67398 * 0.02562 * 13 12 11 15 15 C 1.37591 * 120.57230 * 0.02562 * 14 13 12 16 16 C 1.40706 * 119.88084 * 359.69290 * 15 14 13 17 17 C 1.40892 * 120.32978 * 180.30418 * 16 15 14 18 18 H 1.08001 * 119.99992 * 146.08273 * 17 16 15 19 19 C 1.40278 * 120.00040 * 326.08409 * 17 16 15 20 20 N 1.30626 * 119.99470 * 350.69136 * 19 17 16 21 21 Si 1.86794 * 120.00092 * 170.68635 * 19 17 16 22 22 H 1.48505 * 109.47175 * 0.02562 * 21 19 17 23 23 H 1.48491 * 109.47093 * 120.00039 * 21 19 17 24 24 H 1.48500 * 109.47279 * 240.00319 * 21 19 17 25 25 H 1.08992 * 109.47591 * 299.99810 * 1 2 3 26 26 H 1.08999 * 109.47118 * 60.00228 * 1 2 3 27 27 H 1.09004 * 109.46594 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47189 * 240.00499 * 2 1 3 29 29 H 1.08999 * 109.47118 * 119.99772 * 2 1 3 30 30 H 1.09010 * 109.47111 * 295.00520 * 5 3 2 31 31 H 1.09000 * 109.46917 * 55.00114 * 5 3 2 32 32 H 1.08997 * 109.46641 * 300.00143 * 6 5 3 33 33 H 1.09000 * 109.47153 * 59.99904 * 6 5 3 34 34 H 0.96699 * 113.99474 * 179.97438 * 7 6 5 35 35 H 0.97002 * 120.00500 * 95.00105 * 8 3 2 36 36 H 1.07995 * 119.95769 * 359.97438 * 12 11 9 37 37 H 1.07997 * 119.66210 * 180.02562 * 13 12 11 38 38 H 1.07998 * 119.71233 * 179.97438 * 14 13 12 39 39 H 1.08004 * 120.05974 * 179.97438 * 15 14 13 40 40 H 0.97004 * 119.99289 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9816 -0.8417 5 6 3.5647 1.4445 -0.1257 6 6 4.0644 2.8852 -0.2510 7 8 5.4885 2.8869 -0.3689 8 7 1.6523 2.0974 1.2519 9 6 0.4350 2.6643 1.3670 10 8 -0.3419 2.6317 0.4319 11 6 0.0426 3.3181 2.6288 12 6 0.8766 3.2536 3.7418 13 6 0.5050 3.8684 4.9227 14 6 -0.6982 4.5547 5.0159 15 6 -1.5437 4.6349 3.9334 16 6 -1.1864 4.0228 2.7179 17 6 -2.0421 4.1044 1.6017 18 1 -1.6273 4.1571 0.6059 19 6 -3.4330 4.1173 1.7836 20 7 -3.9397 3.8718 2.9623 21 14 -4.5604 4.4855 0.3404 22 1 -3.7440 4.7270 -0.8764 23 1 -5.4623 3.3287 0.1092 24 1 -5.3709 5.6929 0.6409 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8934 -0.5137 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 4.0029 0.9837 0.7598 31 1 3.8570 0.8803 -1.0112 32 1 3.6262 3.3459 -1.1363 33 1 3.7721 3.4495 0.6346 34 1 5.8751 3.7693 -0.4528 35 1 2.2718 2.1232 1.9979 36 1 1.8150 2.7225 3.6824 37 1 1.1574 3.8144 5.7817 38 1 -0.9732 5.0290 5.9463 39 1 -2.4780 5.1706 4.0153 40 1 -4.9015 3.8803 3.0880 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601328504.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:09 Heat of formation + Delta-G solvation = -82.368162 kcal Electronic energy + Delta-G solvation = -21915.675636 eV Core-core repulsion = 18694.485543 eV Total energy + Delta-G solvation = -3221.190093 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.36801 -37.50961 -36.71870 -35.25566 -33.72942 -31.89077 -30.81766 -29.86822 -29.20854 -25.74334 -25.15249 -22.46811 -21.71462 -21.08350 -20.24832 -19.45378 -17.63144 -17.27051 -16.26156 -15.88404 -15.24175 -14.90184 -14.71770 -14.24223 -13.95423 -13.69591 -13.36851 -12.98841 -12.71390 -12.70317 -12.34420 -12.14309 -11.70931 -11.54968 -11.21036 -11.14001 -11.01497 -10.90822 -10.72282 -10.65352 -10.51988 -10.40662 -10.02779 -9.99895 -9.66878 -9.28094 -8.44140 -8.21183 -7.58657 -7.35381 -6.79886 -4.38404 2.36521 2.79751 3.10361 3.19395 3.21664 3.96154 3.97846 4.08615 4.17773 4.68261 5.01725 5.06851 5.19417 5.45944 5.48187 5.58239 5.64655 5.76060 5.89089 5.95826 5.98815 6.05937 6.20135 6.27609 6.31681 6.34635 6.55428 6.65925 6.95238 6.96866 7.10545 7.18474 7.26179 7.46618 7.52984 7.62722 7.89056 7.98642 8.17833 8.40727 8.67088 8.82868 8.90045 9.44079 10.15440 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.015925 B = 0.005955 C = 0.004982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1757.792192 B = 4701.188793 C = 5618.805995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.129 4.129 3 C 0.151 3.849 4 H 0.086 0.914 5 C -0.124 4.124 6 C 0.074 3.926 7 O -0.579 6.579 8 N -0.744 5.744 9 C 0.566 3.434 10 O -0.531 6.531 11 C -0.262 4.262 12 C -0.058 4.058 13 C -0.246 4.246 14 C -0.096 4.096 15 C -0.148 4.148 16 C 0.145 3.855 17 C -0.414 4.414 18 H 0.106 0.894 19 C 0.069 3.931 20 N -0.793 5.793 21 Si 0.915 3.085 22 H -0.257 1.257 23 H -0.274 1.274 24 H -0.274 1.274 25 H 0.069 0.931 26 H 0.058 0.942 27 H 0.037 0.963 28 H 0.061 0.939 29 H 0.058 0.942 30 H 0.072 0.928 31 H 0.079 0.921 32 H 0.046 0.954 33 H 0.052 0.948 34 H 0.378 0.622 35 H 0.390 0.610 36 H 0.088 0.912 37 H 0.090 0.910 38 H 0.090 0.910 39 H 0.117 0.883 40 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.801 -2.152 -3.485 10.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.168 4.168 3 C 0.045 3.955 4 H 0.104 0.896 5 C -0.162 4.162 6 C -0.003 4.003 7 O -0.385 6.385 8 N -0.399 5.399 9 C 0.360 3.640 10 O -0.409 6.409 11 C -0.267 4.267 12 C -0.077 4.077 13 C -0.266 4.266 14 C -0.115 4.115 15 C -0.168 4.168 16 C 0.141 3.859 17 C -0.442 4.442 18 H 0.123 0.877 19 C -0.149 4.149 20 N -0.418 5.418 21 Si 0.740 3.260 22 H -0.181 1.181 23 H -0.199 1.199 24 H -0.199 1.199 25 H 0.088 0.912 26 H 0.077 0.923 27 H 0.056 0.944 28 H 0.079 0.921 29 H 0.077 0.923 30 H 0.090 0.910 31 H 0.097 0.903 32 H 0.064 0.936 33 H 0.070 0.930 34 H 0.225 0.775 35 H 0.225 0.775 36 H 0.107 0.893 37 H 0.108 0.892 38 H 0.108 0.892 39 H 0.135 0.865 40 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 8.893 -2.850 -4.026 10.170 hybrid contribution -0.212 0.606 0.006 0.642 sum 8.681 -2.244 -4.021 9.827 Atomic orbital electron populations 1.21808 0.94362 0.99952 1.04132 1.21917 0.97579 0.96014 1.01251 1.20766 0.92065 0.93559 0.89076 0.89633 1.21792 0.94866 0.96129 1.03440 1.22215 0.80218 0.97591 1.00309 1.86431 1.21050 1.34001 1.96992 1.46151 1.17883 1.60455 1.15452 1.18343 0.80115 0.77184 0.88391 1.90686 1.50235 1.59290 1.40727 1.19488 1.01909 1.11926 0.93370 1.20653 0.96479 0.97262 0.93299 1.20281 0.99370 1.09591 0.97330 1.20797 0.94610 0.98778 0.97320 1.21360 0.99526 1.02384 0.93494 1.17488 0.89496 0.86301 0.92616 1.20189 0.89838 1.38223 0.95999 0.87666 1.26115 0.99519 0.92331 0.96913 1.69727 1.14303 1.34145 1.23660 0.86131 0.79462 0.78510 0.81935 1.18070 1.19940 1.19947 0.91235 0.92284 0.94381 0.92058 0.92308 0.90968 0.90269 0.93578 0.92983 0.77540 0.77544 0.89349 0.89200 0.89163 0.86515 0.90811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.50 8.51 37.16 0.32 -2.18 16 2 C -0.13 -1.82 5.61 -26.73 -0.15 -1.97 16 3 C 0.15 2.19 2.26 -67.93 -0.15 2.04 16 4 H 0.09 1.40 7.58 -51.93 -0.39 1.00 16 5 C -0.12 -1.48 5.12 -26.73 -0.14 -1.62 16 6 C 0.07 0.88 6.93 37.16 0.26 1.14 16 7 O -0.58 -6.58 13.66 -35.23 -0.48 -7.07 16 8 N -0.74 -12.50 4.43 -54.88 -0.24 -12.74 16 9 C 0.57 12.35 6.28 -12.52 -0.08 12.27 16 10 O -0.53 -13.01 10.73 5.27 0.06 -12.95 16 11 C -0.26 -6.21 5.92 -104.37 -0.62 -6.83 16 12 C -0.06 -1.22 9.52 -39.22 -0.37 -1.59 16 13 C -0.25 -5.19 10.03 -39.37 -0.39 -5.59 16 14 C -0.10 -2.15 10.01 -39.60 -0.40 -2.55 16 15 C -0.15 -3.73 8.62 -38.89 -0.34 -4.07 16 16 C 0.15 3.82 5.51 -106.54 -0.59 3.23 16 17 C -0.41 -11.14 7.67 -37.81 -0.29 -11.43 16 18 H 0.11 2.92 5.93 -52.49 -0.31 2.61 16 19 C 0.07 1.76 5.25 -17.30 -0.09 1.67 16 20 N -0.79 -20.43 11.13 55.56 0.62 -19.81 16 21 Si 0.92 19.49 29.57 -169.99 -5.03 14.47 16 22 H -0.26 -5.56 7.11 56.52 0.40 -5.16 16 23 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 24 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 25 H 0.07 1.44 5.64 -51.93 -0.29 1.15 16 26 H 0.06 1.07 7.84 -51.93 -0.41 0.66 16 27 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 29 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.07 0.84 8.14 -51.92 -0.42 0.42 16 31 H 0.08 0.88 8.14 -51.93 -0.42 0.45 16 32 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.05 0.65 7.75 -51.93 -0.40 0.24 16 34 H 0.38 2.65 9.12 45.56 0.42 3.07 16 35 H 0.39 5.84 6.67 -40.82 -0.27 5.57 16 36 H 0.09 1.54 6.44 -52.49 -0.34 1.20 16 37 H 0.09 1.65 8.06 -52.49 -0.42 1.23 16 38 H 0.09 1.78 8.06 -52.49 -0.42 1.36 16 39 H 0.12 3.01 6.58 -52.48 -0.35 2.66 16 40 H 0.28 6.58 8.29 -40.82 -0.34 6.24 16 LS Contribution 324.90 15.07 4.90 4.90 Total: -1.00 -29.51 324.90 -8.07 -37.59 By element: Atomic # 1 Polarization: 17.94 SS G_CDS: -4.86 Total: 13.08 kcal Atomic # 6 Polarization: -14.43 SS G_CDS: -3.03 Total: -17.46 kcal Atomic # 7 Polarization: -32.93 SS G_CDS: 0.38 Total: -32.55 kcal Atomic # 8 Polarization: -19.59 SS G_CDS: -0.42 Total: -20.02 kcal Atomic # 14 Polarization: 19.49 SS G_CDS: -5.03 Total: 14.47 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -29.51 -8.07 -37.59 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601328504.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.782 kcal (2) G-P(sol) polarization free energy of solvation -29.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.586 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds