Wall clock time and date at job start Mon Mar 30 2020 02:56:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52998 * 109.46571 * 2 1 4 4 H 1.08994 * 109.47840 * 305.00042 * 3 2 1 5 5 C 1.52997 * 109.47246 * 184.99760 * 3 2 1 6 6 C 1.53000 * 109.47658 * 175.00355 * 5 3 2 7 7 O 1.42903 * 109.47107 * 180.02562 * 6 5 3 8 8 N 1.46502 * 109.47034 * 65.00263 * 3 2 1 9 9 C 1.34778 * 119.99684 * 274.99523 * 8 3 2 10 10 O 1.21612 * 120.00354 * 0.02562 * 9 8 3 11 11 C 1.47433 * 119.99875 * 179.72542 * 9 8 3 12 12 C 1.39224 * 120.28187 * 354.43459 * 11 9 8 13 13 C 1.38227 * 120.09224 * 179.97438 * 12 11 9 14 14 C 1.38829 * 120.67398 * 0.02562 * 13 12 11 15 15 C 1.37591 * 120.57230 * 0.02562 * 14 13 12 16 16 C 1.40706 * 119.88084 * 359.69290 * 15 14 13 17 17 C 1.40892 * 120.32978 * 180.30418 * 16 15 14 18 18 H 1.08001 * 119.99992 * 146.08273 * 17 16 15 19 19 C 1.40278 * 120.00040 * 326.08409 * 17 16 15 20 20 N 1.30626 * 119.99470 * 350.69136 * 19 17 16 21 21 Si 1.86794 * 120.00092 * 170.68635 * 19 17 16 22 22 H 1.48505 * 109.47175 * 0.02562 * 21 19 17 23 23 H 1.48491 * 109.47093 * 120.00039 * 21 19 17 24 24 H 1.48500 * 109.47279 * 240.00319 * 21 19 17 25 25 H 1.08992 * 109.47591 * 299.99810 * 1 2 3 26 26 H 1.08999 * 109.47118 * 60.00228 * 1 2 3 27 27 H 1.09004 * 109.46594 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47189 * 240.00499 * 2 1 3 29 29 H 1.08999 * 109.47118 * 119.99772 * 2 1 3 30 30 H 1.09010 * 109.47111 * 295.00520 * 5 3 2 31 31 H 1.09000 * 109.46917 * 55.00114 * 5 3 2 32 32 H 1.08997 * 109.46641 * 300.00143 * 6 5 3 33 33 H 1.09000 * 109.47153 * 59.99904 * 6 5 3 34 34 H 0.96699 * 113.99474 * 179.97438 * 7 6 5 35 35 H 0.97002 * 120.00500 * 95.00105 * 8 3 2 36 36 H 1.07995 * 119.95769 * 359.97438 * 12 11 9 37 37 H 1.07997 * 119.66210 * 180.02562 * 13 12 11 38 38 H 1.07998 * 119.71233 * 179.97438 * 14 13 12 39 39 H 1.08004 * 120.05974 * 179.97438 * 15 14 13 40 40 H 0.97004 * 119.99289 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9816 -0.8417 5 6 3.5647 1.4445 -0.1257 6 6 4.0644 2.8852 -0.2510 7 8 5.4885 2.8869 -0.3689 8 7 1.6523 2.0974 1.2519 9 6 0.4350 2.6643 1.3670 10 8 -0.3419 2.6317 0.4319 11 6 0.0426 3.3181 2.6288 12 6 0.8766 3.2536 3.7418 13 6 0.5050 3.8684 4.9227 14 6 -0.6982 4.5547 5.0159 15 6 -1.5437 4.6349 3.9334 16 6 -1.1864 4.0228 2.7179 17 6 -2.0421 4.1044 1.6017 18 1 -1.6273 4.1571 0.6059 19 6 -3.4330 4.1173 1.7836 20 7 -3.9397 3.8718 2.9623 21 14 -4.5604 4.4855 0.3404 22 1 -3.7440 4.7270 -0.8764 23 1 -5.4623 3.3287 0.1092 24 1 -5.3709 5.6929 0.6409 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8934 -0.5137 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 4.0029 0.9837 0.7598 31 1 3.8570 0.8803 -1.0112 32 1 3.6262 3.3459 -1.1363 33 1 3.7721 3.4495 0.6346 34 1 5.8751 3.7693 -0.4528 35 1 2.2718 2.1232 1.9979 36 1 1.8150 2.7225 3.6824 37 1 1.1574 3.8144 5.7817 38 1 -0.9732 5.0290 5.9463 39 1 -2.4780 5.1706 4.0153 40 1 -4.9015 3.8803 3.0880 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601328504.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:09 Heat of formation + Delta-G solvation = -102.355369 kcal Electronic energy + Delta-G solvation = -21916.542347 eV Core-core repulsion = 18694.485543 eV Total energy + Delta-G solvation = -3222.056804 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.94511 -38.99678 -37.96920 -36.61459 -35.56139 -33.40330 -31.98735 -31.69185 -30.87094 -27.39122 -26.57214 -24.14055 -22.82081 -22.77352 -21.61389 -21.08806 -19.32626 -18.40022 -17.80879 -17.29336 -16.98459 -16.20653 -15.94131 -15.90990 -15.48343 -15.00597 -14.86783 -14.52089 -14.44810 -14.15870 -13.77798 -13.53841 -13.34559 -12.89382 -12.85735 -12.65327 -12.45898 -12.42584 -12.26326 -12.03345 -11.90835 -11.86385 -11.63769 -11.45103 -11.13084 -10.89589 -10.15856 -9.76323 -9.36217 -9.19289 -8.65529 -6.32963 0.56703 1.02184 1.33499 1.47662 1.49278 2.21355 2.43583 2.54769 2.82456 3.19074 3.75729 4.01345 4.03360 4.16808 4.31071 4.35513 4.36989 4.46230 4.55571 4.60615 4.68367 4.80200 4.90897 5.00918 5.03753 5.08294 5.11939 5.14350 5.26720 5.32037 5.37392 5.54269 5.65024 5.82117 5.85944 6.08932 6.13578 6.36780 6.68618 6.85220 6.85825 6.96708 7.06142 7.78834 8.32126 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.015925 B = 0.005955 C = 0.004982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1757.792192 B = 4701.188793 C = 5618.805995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.123 4.123 3 C 0.151 3.849 4 H 0.064 0.936 5 C -0.114 4.114 6 C 0.076 3.924 7 O -0.588 6.588 8 N -0.725 5.725 9 C 0.564 3.436 10 O -0.564 6.564 11 C -0.278 4.278 12 C -0.056 4.056 13 C -0.238 4.238 14 C -0.095 4.095 15 C -0.178 4.178 16 C 0.114 3.886 17 C -0.452 4.452 18 H 0.083 0.917 19 C 0.032 3.968 20 N -0.826 5.826 21 Si 0.976 3.024 22 H -0.268 1.268 23 H -0.269 1.269 24 H -0.257 1.257 25 H 0.029 0.971 26 H 0.038 0.962 27 H 0.053 0.947 28 H 0.091 0.909 29 H 0.073 0.927 30 H 0.084 0.916 31 H 0.095 0.905 32 H 0.042 0.958 33 H 0.045 0.955 34 H 0.396 0.604 35 H 0.402 0.598 36 H 0.131 0.869 37 H 0.130 0.870 38 H 0.117 0.883 39 H 0.098 0.902 40 H 0.287 0.713 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.352 -3.185 -2.949 13.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.161 4.161 3 C 0.046 3.954 4 H 0.082 0.918 5 C -0.151 4.151 6 C -0.002 4.002 7 O -0.397 6.397 8 N -0.379 5.379 9 C 0.357 3.643 10 O -0.445 6.445 11 C -0.283 4.283 12 C -0.074 4.074 13 C -0.257 4.257 14 C -0.113 4.113 15 C -0.198 4.198 16 C 0.110 3.890 17 C -0.481 4.481 18 H 0.101 0.899 19 C -0.183 4.183 20 N -0.452 5.452 21 Si 0.798 3.202 22 H -0.192 1.192 23 H -0.194 1.194 24 H -0.181 1.181 25 H 0.048 0.952 26 H 0.058 0.942 27 H 0.072 0.928 28 H 0.109 0.891 29 H 0.091 0.909 30 H 0.103 0.897 31 H 0.113 0.887 32 H 0.061 0.939 33 H 0.063 0.937 34 H 0.246 0.754 35 H 0.239 0.761 36 H 0.149 0.851 37 H 0.148 0.852 38 H 0.135 0.865 39 H 0.116 0.884 40 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 11.498 -3.879 -3.469 12.620 hybrid contribution -0.782 0.884 -0.076 1.183 sum 10.716 -2.995 -3.545 11.677 Atomic orbital electron populations 1.21723 0.97002 0.99996 1.01159 1.21895 0.94951 0.95867 1.03385 1.20890 0.94110 0.93388 0.87001 0.91795 1.21687 0.92166 0.96541 1.04752 1.22125 0.80754 0.97441 0.99882 1.86379 1.20443 1.35893 1.96941 1.45908 1.16181 1.59049 1.16758 1.18236 0.81276 0.77334 0.87488 1.90673 1.51735 1.60472 1.41618 1.19919 1.01602 1.11409 0.95320 1.21070 0.97442 0.96744 0.92187 1.20785 0.98905 1.07515 0.98523 1.21159 0.94574 0.98201 0.97376 1.21295 1.00017 1.03912 0.94561 1.17866 0.90851 0.87138 0.93125 1.20120 0.91117 1.41524 0.95329 0.89883 1.26765 1.00271 0.91910 0.99328 1.69758 1.14847 1.35610 1.25014 0.85240 0.77559 0.78967 0.78422 1.19239 1.19404 1.18077 0.95232 0.94239 0.92762 0.89069 0.90877 0.89748 0.88680 0.93934 0.93684 0.75405 0.76107 0.85145 0.85221 0.86519 0.88393 0.90207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.85 8.51 71.98 0.61 -4.24 16 2 C -0.12 -3.17 5.61 30.60 0.17 -3.00 16 3 C 0.15 4.13 2.26 44.99 0.10 4.23 16 4 H 0.06 2.07 7.58 -2.39 -0.02 2.06 16 5 C -0.11 -2.35 5.12 30.59 0.16 -2.19 16 6 C 0.08 1.62 6.93 71.98 0.50 2.12 16 7 O -0.59 -11.64 13.66 -148.98 -2.04 -13.68 16 8 N -0.72 -23.36 4.43 -445.80 -1.98 -25.33 16 9 C 0.56 25.00 6.28 86.67 0.54 25.55 16 10 O -0.56 -28.99 10.73 -4.07 -0.04 -29.04 16 11 C -0.28 -13.27 5.92 -19.70 -0.12 -13.38 16 12 C -0.06 -2.20 9.52 22.50 0.21 -1.99 16 13 C -0.24 -9.29 10.03 22.41 0.22 -9.06 16 14 C -0.09 -4.12 10.01 22.26 0.22 -3.90 16 15 C -0.18 -9.23 8.62 22.72 0.20 -9.04 16 16 C 0.11 6.23 5.51 -21.11 -0.12 6.12 16 17 C -0.45 -25.80 7.67 23.42 0.18 -25.62 16 18 H 0.08 4.97 5.93 -2.91 -0.02 4.95 16 19 C 0.03 1.69 5.25 85.37 0.45 2.14 16 20 N -0.83 -44.53 11.13 21.88 0.24 -44.28 16 21 Si 0.98 41.93 29.57 68.60 2.03 43.96 16 22 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 23 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 24 H -0.26 -10.15 7.11 99.48 0.71 -9.44 16 25 H 0.03 1.23 5.64 -2.39 -0.01 1.22 16 26 H 0.04 1.47 7.84 -2.39 -0.02 1.45 16 27 H 0.05 1.62 8.14 -2.38 -0.02 1.61 16 28 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 29 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 30 H 0.08 1.59 8.14 -2.38 -0.02 1.57 16 31 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 32 H 0.04 0.94 8.14 -2.39 -0.02 0.92 16 33 H 0.04 1.02 7.75 -2.39 -0.02 1.00 16 34 H 0.40 4.50 9.12 -74.06 -0.68 3.82 16 35 H 0.40 10.89 6.67 -92.71 -0.62 10.27 16 36 H 0.13 3.97 6.44 -2.91 -0.02 3.95 16 37 H 0.13 4.06 8.06 -2.91 -0.02 4.04 16 38 H 0.12 4.37 8.06 -2.91 -0.02 4.35 16 39 H 0.10 5.32 6.58 -2.91 -0.02 5.31 16 40 H 0.29 14.01 8.29 -92.71 -0.77 13.24 16 Total: -1.00 -67.98 324.90 1.33 -66.65 By element: Atomic # 1 Polarization: 34.22 SS G_CDS: -0.23 Total: 33.99 kcal Atomic # 6 Polarization: -35.61 SS G_CDS: 3.34 Total: -32.27 kcal Atomic # 7 Polarization: -67.88 SS G_CDS: -1.73 Total: -69.61 kcal Atomic # 8 Polarization: -40.64 SS G_CDS: -2.08 Total: -42.71 kcal Atomic # 14 Polarization: 41.93 SS G_CDS: 2.03 Total: 43.96 kcal Total: -67.98 1.33 -66.65 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601328504.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.705 kcal (2) G-P(sol) polarization free energy of solvation -67.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.650 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds