Wall clock time and date at job start Mon Mar 30 2020 02:56:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.47203 * 2 1 4 4 H 1.08995 * 109.47141 * 54.99672 * 3 2 1 5 5 C 1.52999 * 109.47338 * 175.00244 * 3 2 1 6 6 C 1.52998 * 109.47352 * 184.99987 * 5 3 2 7 7 O 1.42900 * 109.47143 * 180.02562 * 6 5 3 8 8 N 1.46502 * 109.47113 * 295.00210 * 3 2 1 9 9 C 1.34777 * 120.00063 * 85.00077 * 8 3 2 10 10 O 1.21610 * 119.99971 * 359.97438 * 9 8 3 11 11 C 1.47433 * 119.99953 * 180.02562 * 9 8 3 12 12 C 1.39223 * 120.28267 * 355.37568 * 11 9 8 13 13 C 1.38220 * 120.09170 * 179.97438 * 12 11 9 14 14 C 1.38833 * 120.67698 * 0.02562 * 13 12 11 15 15 C 1.37600 * 120.56820 * 359.97302 * 14 13 12 16 16 C 1.40707 * 119.88301 * 359.74763 * 15 14 13 17 17 C 1.40884 * 120.32809 * 180.25125 * 16 15 14 18 18 H 1.08000 * 120.00043 * 215.79909 * 17 16 15 19 19 C 1.40272 * 120.00207 * 35.80749 * 17 16 15 20 20 N 1.30630 * 119.99808 * 8.99222 * 19 17 16 21 21 Si 1.86796 * 120.00123 * 188.98848 * 19 17 16 22 22 H 1.48495 * 109.47272 * 0.02562 * 21 19 17 23 23 H 1.48500 * 109.47107 * 120.00264 * 21 19 17 24 24 H 1.48496 * 109.47276 * 239.99823 * 21 19 17 25 25 H 1.09000 * 109.47237 * 59.99834 * 1 2 3 26 26 H 1.08998 * 109.46972 * 179.97438 * 1 2 3 27 27 H 1.09006 * 109.46922 * 300.00205 * 1 2 3 28 28 H 1.09006 * 109.46676 * 240.00286 * 2 1 3 29 29 H 1.09000 * 109.47237 * 120.00166 * 2 1 3 30 30 H 1.09002 * 109.46765 * 64.99977 * 5 3 2 31 31 H 1.08998 * 109.47162 * 305.00478 * 5 3 2 32 32 H 1.09001 * 109.46983 * 59.99497 * 6 5 3 33 33 H 1.09000 * 109.47123 * 299.99898 * 6 5 3 34 34 H 0.96700 * 113.99576 * 179.97438 * 7 6 5 35 35 H 0.97006 * 120.00254 * 265.00187 * 8 3 2 36 36 H 1.07999 * 119.95392 * 359.97438 * 12 11 9 37 37 H 1.07996 * 119.66502 * 179.97438 * 13 12 11 38 38 H 1.07998 * 119.71565 * 179.97438 * 14 13 12 39 39 H 1.07999 * 120.05438 * 179.97438 * 15 14 13 40 40 H 0.96998 * 119.99879 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8417 5 6 3.5648 1.4444 0.1257 6 6 4.0645 2.8850 0.2511 7 8 5.4887 2.8867 0.3678 8 7 1.6524 2.0975 -1.2518 9 6 0.4351 2.6645 -1.3669 10 8 -0.3417 2.6319 -0.4318 11 6 0.0448 3.3231 -2.6269 12 6 0.9616 3.4477 -3.6672 13 6 0.5914 4.0654 -4.8470 14 6 -0.6923 4.5683 -5.0107 15 6 -1.6203 4.4601 -4.0005 16 6 -1.2707 3.8305 -2.7917 17 6 -2.2150 3.7099 -1.7532 18 1 -1.8986 3.7895 -0.7237 19 6 -3.5662 3.4863 -2.0564 20 7 -3.9242 3.2153 -3.2831 21 14 -4.8537 3.5761 -0.7059 22 1 -4.1948 3.8970 0.5856 23 1 -5.8417 4.6352 -1.0336 24 1 -5.5482 2.2682 -0.5963 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.8932 -0.5138 -0.8901 29 1 1.8933 -0.5139 0.8900 30 1 4.0029 0.9836 -0.7598 31 1 3.8571 0.8800 1.0112 32 1 3.6263 3.3458 1.1364 33 1 3.7723 3.4493 -0.6345 34 1 5.8754 3.7691 0.4508 35 1 2.2719 2.1232 -1.9979 36 1 1.9634 3.0610 -3.5523 37 1 1.3082 4.1587 -5.6493 38 1 -0.9648 5.0484 -5.9388 39 1 -2.6164 4.8546 -4.1366 40 1 -4.8586 3.0610 -3.4928 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601328505.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:12 Heat of formation + Delta-G solvation = -82.282222 kcal Electronic energy + Delta-G solvation = -21933.107658 eV Core-core repulsion = 18711.921291 eV Total energy + Delta-G solvation = -3221.186367 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.36854 -37.51212 -36.72284 -35.25756 -33.71732 -31.88964 -30.81221 -29.86761 -29.22057 -25.73316 -25.15013 -22.46743 -21.70805 -21.08587 -20.24783 -19.46616 -17.63809 -17.27002 -16.25636 -15.87561 -15.21778 -14.90536 -14.72436 -14.24359 -13.95627 -13.71476 -13.37814 -12.98030 -12.71318 -12.71007 -12.32513 -12.13126 -11.73045 -11.55107 -11.20959 -11.14679 -11.03513 -10.90035 -10.71429 -10.61846 -10.50242 -10.39589 -10.05759 -10.00648 -9.66553 -9.27721 -8.39622 -8.21930 -7.59392 -7.33390 -6.79859 -4.39252 2.35715 2.79644 3.10772 3.19834 3.21671 3.95974 3.98482 4.08231 4.17873 4.69403 5.01335 5.06881 5.19573 5.45801 5.49216 5.58319 5.63663 5.76324 5.89676 5.95802 5.98239 6.06158 6.20832 6.27179 6.31702 6.36714 6.56667 6.66120 6.94321 6.99645 7.09979 7.17926 7.27072 7.45997 7.52395 7.61669 7.88006 7.99400 8.17795 8.40515 8.68764 8.83807 8.90903 9.44833 10.16330 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.016411 B = 0.006025 C = 0.004893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1705.784994 B = 4646.536095 C = 5720.779474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.129 4.129 3 C 0.151 3.849 4 H 0.085 0.915 5 C -0.124 4.124 6 C 0.074 3.926 7 O -0.579 6.579 8 N -0.744 5.744 9 C 0.566 3.434 10 O -0.533 6.533 11 C -0.261 4.261 12 C -0.058 4.058 13 C -0.245 4.245 14 C -0.096 4.096 15 C -0.147 4.147 16 C 0.147 3.853 17 C -0.421 4.421 18 H 0.111 0.889 19 C 0.069 3.931 20 N -0.794 5.794 21 Si 0.914 3.086 22 H -0.257 1.257 23 H -0.274 1.274 24 H -0.274 1.274 25 H 0.070 0.930 26 H 0.037 0.963 27 H 0.058 0.942 28 H 0.058 0.942 29 H 0.061 0.939 30 H 0.072 0.928 31 H 0.079 0.921 32 H 0.046 0.954 33 H 0.051 0.949 34 H 0.378 0.622 35 H 0.390 0.610 36 H 0.089 0.911 37 H 0.090 0.910 38 H 0.090 0.910 39 H 0.115 0.885 40 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.745 -1.603 3.780 10.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.168 4.168 3 C 0.046 3.954 4 H 0.104 0.896 5 C -0.162 4.162 6 C -0.003 4.003 7 O -0.385 6.385 8 N -0.399 5.399 9 C 0.360 3.640 10 O -0.411 6.411 11 C -0.266 4.266 12 C -0.077 4.077 13 C -0.264 4.264 14 C -0.115 4.115 15 C -0.166 4.166 16 C 0.143 3.857 17 C -0.449 4.449 18 H 0.129 0.871 19 C -0.149 4.149 20 N -0.420 5.420 21 Si 0.739 3.261 22 H -0.180 1.180 23 H -0.200 1.200 24 H -0.200 1.200 25 H 0.089 0.911 26 H 0.056 0.944 27 H 0.077 0.923 28 H 0.077 0.923 29 H 0.079 0.921 30 H 0.090 0.910 31 H 0.097 0.903 32 H 0.064 0.936 33 H 0.070 0.930 34 H 0.225 0.775 35 H 0.225 0.775 36 H 0.107 0.893 37 H 0.108 0.892 38 H 0.109 0.891 39 H 0.133 0.867 40 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 8.858 -2.336 4.298 10.119 hybrid contribution -0.251 0.484 -0.079 0.551 sum 8.607 -1.852 4.219 9.763 Atomic orbital electron populations 1.21811 0.94305 0.99982 1.04189 1.21918 0.97626 0.95981 1.01234 1.20765 0.92036 0.93596 0.89039 0.89647 1.21794 0.94883 0.96111 1.03459 1.22214 0.80220 0.97604 1.00277 1.86433 1.21032 1.33989 1.97007 1.46130 1.17885 1.60438 1.15463 1.18324 0.80029 0.77284 0.88341 1.90660 1.50021 1.59756 1.40677 1.19500 0.98083 1.14048 0.94957 1.20653 0.96334 0.97275 0.93465 1.20286 0.96960 1.11113 0.98061 1.20799 0.93886 0.99334 0.97506 1.21340 0.98668 1.02029 0.94574 1.17492 0.89981 0.86162 0.92076 1.20327 0.90337 1.37669 0.96579 0.87087 1.26136 0.99955 0.92505 0.96289 1.69726 1.19161 1.33045 1.20037 0.86144 0.79585 0.78462 0.81941 1.18005 1.19956 1.19980 0.91105 0.94393 0.92314 0.92307 0.92084 0.90957 0.90260 0.93577 0.93026 0.77549 0.77539 0.89339 0.89169 0.89143 0.86736 0.90840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.54 8.51 37.16 0.32 -2.22 16 2 C -0.13 -1.84 5.61 -26.73 -0.15 -1.99 16 3 C 0.15 2.20 2.26 -67.93 -0.15 2.05 16 4 H 0.09 1.39 7.58 -51.93 -0.39 1.00 16 5 C -0.12 -1.49 5.12 -26.73 -0.14 -1.62 16 6 C 0.07 0.88 6.93 37.16 0.26 1.14 16 7 O -0.58 -6.54 13.66 -35.23 -0.48 -7.02 16 8 N -0.74 -12.52 4.43 -54.88 -0.24 -12.77 16 9 C 0.57 12.35 6.29 -12.52 -0.08 12.27 16 10 O -0.53 -12.99 10.66 5.27 0.06 -12.93 16 11 C -0.26 -6.18 5.92 -104.36 -0.62 -6.80 16 12 C -0.06 -1.22 9.52 -39.22 -0.37 -1.59 16 13 C -0.24 -5.14 10.03 -39.37 -0.39 -5.54 16 14 C -0.10 -2.15 10.01 -39.59 -0.40 -2.55 16 15 C -0.15 -3.69 8.62 -38.88 -0.33 -4.02 16 16 C 0.15 3.86 5.48 -106.54 -0.58 3.28 16 17 C -0.42 -11.31 7.78 -37.82 -0.29 -11.60 16 18 H 0.11 3.09 5.73 -52.49 -0.30 2.79 16 19 C 0.07 1.76 5.25 -17.30 -0.09 1.67 16 20 N -0.79 -20.45 11.25 55.56 0.63 -19.83 16 21 Si 0.91 19.50 29.57 -169.99 -5.03 14.48 16 22 H -0.26 -5.56 7.11 56.52 0.40 -5.16 16 23 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 24 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 25 H 0.07 1.49 5.64 -51.93 -0.29 1.20 16 26 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.06 1.07 7.84 -51.93 -0.41 0.67 16 28 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 29 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 32 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 33 H 0.05 0.63 7.75 -51.93 -0.40 0.23 16 34 H 0.38 2.61 9.12 45.56 0.42 3.03 16 35 H 0.39 5.87 6.66 -40.82 -0.27 5.60 16 36 H 0.09 1.53 6.42 -52.49 -0.34 1.19 16 37 H 0.09 1.65 8.06 -52.49 -0.42 1.22 16 38 H 0.09 1.78 8.06 -52.49 -0.42 1.36 16 39 H 0.11 2.95 6.72 -52.49 -0.35 2.59 16 40 H 0.28 6.58 8.29 -40.82 -0.34 6.24 16 LS Contribution 324.95 15.07 4.90 4.90 Total: -1.00 -29.44 324.95 -8.06 -37.51 By element: Atomic # 1 Polarization: 18.06 SS G_CDS: -4.86 Total: 13.20 kcal Atomic # 6 Polarization: -14.50 SS G_CDS: -3.03 Total: -17.53 kcal Atomic # 7 Polarization: -32.98 SS G_CDS: 0.38 Total: -32.59 kcal Atomic # 8 Polarization: -19.53 SS G_CDS: -0.43 Total: -19.95 kcal Atomic # 14 Polarization: 19.50 SS G_CDS: -5.03 Total: 14.48 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -29.44 -8.06 -37.51 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601328505.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.775 kcal (2) G-P(sol) polarization free energy of solvation -29.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.507 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds