Wall clock time and date at job start Mon Mar 30 2020 02:56:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.47203 * 2 1 4 4 H 1.08995 * 109.47141 * 54.99672 * 3 2 1 5 5 C 1.52999 * 109.47338 * 175.00244 * 3 2 1 6 6 C 1.52998 * 109.47352 * 184.99987 * 5 3 2 7 7 O 1.42900 * 109.47143 * 180.02562 * 6 5 3 8 8 N 1.46502 * 109.47113 * 295.00210 * 3 2 1 9 9 C 1.34777 * 120.00063 * 85.00077 * 8 3 2 10 10 O 1.21610 * 119.99971 * 359.97438 * 9 8 3 11 11 C 1.47433 * 119.99953 * 180.02562 * 9 8 3 12 12 C 1.39223 * 120.28267 * 355.37568 * 11 9 8 13 13 C 1.38220 * 120.09170 * 179.97438 * 12 11 9 14 14 C 1.38833 * 120.67698 * 0.02562 * 13 12 11 15 15 C 1.37600 * 120.56820 * 359.97302 * 14 13 12 16 16 C 1.40707 * 119.88301 * 359.74763 * 15 14 13 17 17 C 1.40884 * 120.32809 * 180.25125 * 16 15 14 18 18 H 1.08000 * 120.00043 * 215.79909 * 17 16 15 19 19 C 1.40272 * 120.00207 * 35.80749 * 17 16 15 20 20 N 1.30630 * 119.99808 * 8.99222 * 19 17 16 21 21 Si 1.86796 * 120.00123 * 188.98848 * 19 17 16 22 22 H 1.48495 * 109.47272 * 0.02562 * 21 19 17 23 23 H 1.48500 * 109.47107 * 120.00264 * 21 19 17 24 24 H 1.48496 * 109.47276 * 239.99823 * 21 19 17 25 25 H 1.09000 * 109.47237 * 59.99834 * 1 2 3 26 26 H 1.08998 * 109.46972 * 179.97438 * 1 2 3 27 27 H 1.09006 * 109.46922 * 300.00205 * 1 2 3 28 28 H 1.09006 * 109.46676 * 240.00286 * 2 1 3 29 29 H 1.09000 * 109.47237 * 120.00166 * 2 1 3 30 30 H 1.09002 * 109.46765 * 64.99977 * 5 3 2 31 31 H 1.08998 * 109.47162 * 305.00478 * 5 3 2 32 32 H 1.09001 * 109.46983 * 59.99497 * 6 5 3 33 33 H 1.09000 * 109.47123 * 299.99898 * 6 5 3 34 34 H 0.96700 * 113.99576 * 179.97438 * 7 6 5 35 35 H 0.97006 * 120.00254 * 265.00187 * 8 3 2 36 36 H 1.07999 * 119.95392 * 359.97438 * 12 11 9 37 37 H 1.07996 * 119.66502 * 179.97438 * 13 12 11 38 38 H 1.07998 * 119.71565 * 179.97438 * 14 13 12 39 39 H 1.07999 * 120.05438 * 179.97438 * 15 14 13 40 40 H 0.96998 * 119.99879 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8417 5 6 3.5648 1.4444 0.1257 6 6 4.0645 2.8850 0.2511 7 8 5.4887 2.8867 0.3678 8 7 1.6524 2.0975 -1.2518 9 6 0.4351 2.6645 -1.3669 10 8 -0.3417 2.6319 -0.4318 11 6 0.0448 3.3231 -2.6269 12 6 0.9616 3.4477 -3.6672 13 6 0.5914 4.0654 -4.8470 14 6 -0.6923 4.5683 -5.0107 15 6 -1.6203 4.4601 -4.0005 16 6 -1.2707 3.8305 -2.7917 17 6 -2.2150 3.7099 -1.7532 18 1 -1.8986 3.7895 -0.7237 19 6 -3.5662 3.4863 -2.0564 20 7 -3.9242 3.2153 -3.2831 21 14 -4.8537 3.5761 -0.7059 22 1 -4.1948 3.8970 0.5856 23 1 -5.8417 4.6352 -1.0336 24 1 -5.5482 2.2682 -0.5963 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.8932 -0.5138 -0.8901 29 1 1.8933 -0.5139 0.8900 30 1 4.0029 0.9836 -0.7598 31 1 3.8571 0.8800 1.0112 32 1 3.6263 3.3458 1.1364 33 1 3.7723 3.4493 -0.6345 34 1 5.8754 3.7691 0.4508 35 1 2.2719 2.1232 -1.9979 36 1 1.9634 3.0610 -3.5523 37 1 1.3082 4.1587 -5.6493 38 1 -0.9648 5.0484 -5.9388 39 1 -2.6164 4.8546 -4.1366 40 1 -4.8586 3.0610 -3.4928 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601328505.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:12 Heat of formation + Delta-G solvation = -102.208679 kcal Electronic energy + Delta-G solvation = -21933.971734 eV Core-core repulsion = 18711.921291 eV Total energy + Delta-G solvation = -3222.050443 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.94539 -38.99460 -37.96724 -36.61403 -35.54841 -33.40865 -31.98341 -31.68861 -30.87969 -27.38029 -26.57029 -24.13864 -22.82068 -22.77197 -21.61405 -21.09946 -19.32563 -18.39423 -17.79717 -17.28444 -16.97223 -16.20499 -15.94711 -15.90639 -15.49645 -15.00718 -14.89154 -14.51609 -14.42755 -14.18354 -13.75649 -13.53267 -13.36090 -12.91804 -12.86751 -12.65454 -12.43012 -12.40371 -12.26976 -12.02751 -11.91368 -11.87528 -11.64437 -11.44604 -11.12715 -10.88915 -10.11301 -9.76677 -9.36669 -9.17443 -8.65536 -6.33747 0.56207 1.02151 1.33581 1.47253 1.49364 2.21719 2.42421 2.55734 2.83810 3.19470 3.74882 4.01372 4.03565 4.17254 4.31312 4.35499 4.36858 4.46136 4.55766 4.60059 4.68475 4.80357 4.90796 5.01100 5.03549 5.08282 5.11585 5.14460 5.26407 5.32883 5.36961 5.54909 5.65011 5.81791 5.85462 6.08618 6.14635 6.37538 6.69925 6.85881 6.86594 6.97044 7.06797 7.79316 8.32936 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.016411 B = 0.006025 C = 0.004893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1705.784994 B = 4646.536095 C = 5720.779474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.123 4.123 3 C 0.151 3.849 4 H 0.065 0.935 5 C -0.114 4.114 6 C 0.076 3.924 7 O -0.589 6.589 8 N -0.725 5.725 9 C 0.564 3.436 10 O -0.565 6.565 11 C -0.277 4.277 12 C -0.056 4.056 13 C -0.237 4.237 14 C -0.095 4.095 15 C -0.177 4.177 16 C 0.116 3.884 17 C -0.458 4.458 18 H 0.089 0.911 19 C 0.032 3.968 20 N -0.827 5.827 21 Si 0.975 3.025 22 H -0.268 1.268 23 H -0.257 1.257 24 H -0.269 1.269 25 H 0.029 0.971 26 H 0.052 0.948 27 H 0.039 0.961 28 H 0.071 0.929 29 H 0.091 0.909 30 H 0.083 0.917 31 H 0.095 0.905 32 H 0.043 0.957 33 H 0.046 0.954 34 H 0.396 0.604 35 H 0.402 0.598 36 H 0.131 0.869 37 H 0.131 0.869 38 H 0.117 0.883 39 H 0.095 0.905 40 H 0.287 0.713 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.412 -2.404 3.332 13.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.161 4.161 3 C 0.047 3.953 4 H 0.083 0.917 5 C -0.152 4.152 6 C -0.002 4.002 7 O -0.397 6.397 8 N -0.379 5.379 9 C 0.357 3.643 10 O -0.446 6.446 11 C -0.281 4.281 12 C -0.075 4.075 13 C -0.256 4.256 14 C -0.113 4.113 15 C -0.196 4.196 16 C 0.112 3.888 17 C -0.488 4.488 18 H 0.107 0.893 19 C -0.182 4.182 20 N -0.454 5.454 21 Si 0.797 3.203 22 H -0.192 1.192 23 H -0.182 1.182 24 H -0.194 1.194 25 H 0.048 0.952 26 H 0.071 0.929 27 H 0.059 0.941 28 H 0.090 0.910 29 H 0.109 0.891 30 H 0.102 0.898 31 H 0.113 0.887 32 H 0.061 0.939 33 H 0.064 0.936 34 H 0.246 0.754 35 H 0.239 0.761 36 H 0.149 0.851 37 H 0.148 0.852 38 H 0.135 0.865 39 H 0.113 0.887 40 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 11.578 -3.132 3.831 12.591 hybrid contribution -0.845 0.729 -0.007 1.116 sum 10.733 -2.402 3.824 11.645 Atomic orbital electron populations 1.21722 0.97011 0.99947 1.01212 1.21898 0.94934 0.95974 1.03320 1.20886 0.94117 0.93325 0.87012 0.91673 1.21685 0.92144 0.96623 1.04720 1.22123 0.80745 0.97367 0.99940 1.86381 1.20446 1.35897 1.96961 1.45897 1.16197 1.59046 1.16765 1.18226 0.81182 0.77438 0.87454 1.90648 1.51467 1.60875 1.41572 1.19935 0.97865 1.13657 0.96688 1.21074 0.97625 0.96334 0.92433 1.20793 0.96860 1.08962 0.98946 1.21162 0.94044 0.98502 0.97610 1.21272 0.98860 1.03827 0.95673 1.17865 0.91381 0.86859 0.92675 1.20247 0.91824 1.40890 0.95794 0.89335 1.26769 1.01181 0.91917 0.98338 1.69757 1.19794 1.34530 1.21275 0.85260 0.77387 0.78961 0.78720 1.19246 1.18173 1.19358 0.95230 0.92899 0.94139 0.91021 0.89050 0.89823 0.88697 0.93858 0.93606 0.75394 0.76125 0.85100 0.85159 0.86491 0.88660 0.90256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.95 8.51 71.98 0.61 -4.33 16 2 C -0.12 -3.23 5.61 30.59 0.17 -3.06 16 3 C 0.15 4.15 2.26 44.99 0.10 4.25 16 4 H 0.07 2.10 7.58 -2.39 -0.02 2.08 16 5 C -0.11 -2.35 5.12 30.59 0.16 -2.19 16 6 C 0.08 1.60 6.93 71.98 0.50 2.10 16 7 O -0.59 -11.48 13.66 -148.98 -2.04 -13.51 16 8 N -0.72 -23.39 4.43 -445.79 -1.98 -25.37 16 9 C 0.56 24.97 6.29 86.67 0.55 25.52 16 10 O -0.56 -28.88 10.66 -4.06 -0.04 -28.93 16 11 C -0.28 -13.19 5.92 -19.70 -0.12 -13.31 16 12 C -0.06 -2.21 9.52 22.50 0.21 -1.99 16 13 C -0.24 -9.18 10.03 22.41 0.22 -8.96 16 14 C -0.09 -4.11 10.01 22.26 0.22 -3.89 16 15 C -0.18 -9.14 8.62 22.72 0.20 -8.95 16 16 C 0.12 6.33 5.48 -21.11 -0.12 6.22 16 17 C -0.46 -26.18 7.78 23.41 0.18 -26.00 16 18 H 0.09 5.31 5.73 -2.91 -0.02 5.30 16 19 C 0.03 1.72 5.25 85.37 0.45 2.17 16 20 N -0.83 -44.56 11.25 21.88 0.25 -44.32 16 21 Si 0.97 41.98 29.57 68.60 2.03 44.01 16 22 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 23 H -0.26 -10.25 7.11 99.48 0.71 -9.54 16 24 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16 25 H 0.03 1.26 5.64 -2.39 -0.01 1.25 16 26 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 27 H 0.04 1.52 7.84 -2.38 -0.02 1.50 16 28 H 0.07 1.73 8.14 -2.38 -0.02 1.71 16 29 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 30 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 31 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 32 H 0.04 0.93 8.14 -2.39 -0.02 0.91 16 33 H 0.05 1.01 7.75 -2.39 -0.02 0.99 16 34 H 0.40 4.36 9.12 -74.06 -0.68 3.68 16 35 H 0.40 10.92 6.66 -92.70 -0.62 10.30 16 36 H 0.13 3.95 6.42 -2.91 -0.02 3.93 16 37 H 0.13 4.05 8.06 -2.91 -0.02 4.03 16 38 H 0.12 4.37 8.06 -2.91 -0.02 4.34 16 39 H 0.10 5.17 6.72 -2.91 -0.02 5.16 16 40 H 0.29 14.00 8.29 -92.71 -0.77 13.23 16 Total: -1.00 -67.84 324.95 1.34 -66.51 By element: Atomic # 1 Polarization: 34.24 SS G_CDS: -0.23 Total: 34.02 kcal Atomic # 6 Polarization: -35.76 SS G_CDS: 3.34 Total: -32.41 kcal Atomic # 7 Polarization: -67.96 SS G_CDS: -1.73 Total: -69.69 kcal Atomic # 8 Polarization: -40.36 SS G_CDS: -2.08 Total: -42.44 kcal Atomic # 14 Polarization: 41.98 SS G_CDS: 2.03 Total: 44.01 kcal Total: -67.84 1.34 -66.51 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601328505.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.702 kcal (2) G-P(sol) polarization free energy of solvation -67.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.507 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds