Wall clock time and date at job start Mon Mar 30 2020 01:56:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.47099 * 2 1 4 4 C 1.53004 * 109.46836 * 240.00124 * 2 1 3 5 5 O 1.42902 * 109.47102 * 59.99885 * 4 2 1 6 6 C 1.52994 * 109.47235 * 119.99892 * 2 1 3 7 7 N 1.46500 * 109.47189 * 299.99675 * 6 2 1 8 8 C 1.34775 * 119.99983 * 179.97438 * 7 6 2 9 9 O 1.21616 * 120.00383 * 0.02562 * 8 7 6 10 10 C 1.47437 * 120.00283 * 180.02562 * 8 7 6 11 11 C 1.39227 * 120.28103 * 355.71208 * 10 8 7 12 12 C 1.38223 * 120.09427 * 180.27969 * 11 10 8 13 13 C 1.38824 * 120.66869 * 359.69405 * 12 11 10 14 14 C 1.37596 * 120.57733 * 359.97438 * 13 12 11 15 15 C 1.40709 * 119.87781 * 0.02562 * 14 13 12 16 16 C 1.40885 * 120.32254 * 179.97438 * 15 14 13 17 17 H 1.08003 * 119.99729 * 216.32445 * 16 15 14 18 18 C 1.40272 * 120.00475 * 36.32620 * 16 15 14 19 19 N 1.30628 * 120.00173 * 190.50975 * 18 16 15 20 20 Si 1.86800 * 119.99976 * 10.50597 * 18 16 15 21 21 H 1.48495 * 109.47236 * 267.22657 * 20 18 16 22 22 H 1.48498 * 109.46909 * 27.22603 * 20 18 16 23 23 H 1.48502 * 109.47265 * 147.22555 * 20 18 16 24 24 H 1.09004 * 109.46980 * 300.00448 * 1 2 3 25 25 H 1.09000 * 109.47288 * 59.99632 * 1 2 3 26 26 H 1.08996 * 109.47517 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.47136 * 180.02562 * 3 2 1 28 28 H 1.09007 * 109.47222 * 299.99959 * 3 2 1 29 29 H 1.09000 * 109.47346 * 60.00356 * 3 2 1 30 30 H 1.09001 * 109.46791 * 179.97438 * 4 2 1 31 31 H 1.09001 * 109.46985 * 299.99697 * 4 2 1 32 32 H 0.96699 * 113.99394 * 179.97438 * 5 4 2 33 33 H 1.09001 * 109.47209 * 180.02562 * 6 2 1 34 34 H 1.09001 * 109.47192 * 59.99932 * 6 2 1 35 35 H 0.97001 * 120.00283 * 0.02562 * 7 6 2 36 36 H 1.08004 * 119.95035 * 359.97438 * 11 10 8 37 37 H 1.07991 * 119.66384 * 179.72168 * 12 11 10 38 38 H 1.08003 * 119.70698 * 180.02562 * 13 12 11 39 39 H 1.07999 * 120.06224 * 180.02562 * 14 13 12 40 40 H 0.97002 * 120.00206 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 -1.2493 5 8 1.5635 -0.0476 -2.4161 6 6 2.0400 -0.7212 1.2492 7 7 1.5518 -0.0305 2.4454 8 6 1.8770 -0.4913 3.6695 9 8 2.5761 -1.4801 3.7811 10 6 1.3852 0.2034 4.8733 11 6 0.6594 1.3856 4.7544 12 6 0.2051 2.0368 5.8859 13 6 0.4590 1.5212 7.1496 14 6 1.1676 0.3512 7.2988 15 6 1.6412 -0.3312 6.1630 16 6 2.3683 -1.5296 6.3050 17 1 3.1854 -1.7482 5.6334 18 6 2.0309 -2.4388 7.3184 19 7 2.8220 -3.4438 7.5841 20 14 0.4505 -2.2125 8.2882 21 1 0.7307 -1.4225 9.5140 22 1 -0.5443 -1.4934 7.4525 23 1 -0.0913 -3.5417 8.6690 24 1 -0.3633 0.5139 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3634 -1.0276 0.0005 27 1 3.1300 1.4425 -0.0005 28 1 1.6766 1.9564 -0.8900 29 1 1.6767 1.9564 0.8900 30 1 3.1299 -0.7209 -1.2495 31 1 1.6766 -1.7489 -1.2493 32 1 1.8492 -0.4509 -3.2472 33 1 3.1300 -0.7208 1.2494 34 1 1.6767 -1.7489 1.2492 35 1 0.9938 0.7579 2.3564 36 1 0.4553 1.7970 3.7769 37 1 -0.3533 2.9556 5.7858 38 1 0.0964 2.0426 8.0232 39 1 1.3600 -0.0427 8.2859 40 1 2.5889 -4.0724 8.2852 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601352473.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:18 Heat of formation + Delta-G solvation = -76.487291 kcal Electronic energy + Delta-G solvation = -21651.632267 eV Core-core repulsion = 18430.697188 eV Total energy + Delta-G solvation = -3220.935079 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.41489 -38.22540 -36.89512 -35.43972 -33.71073 -32.48811 -30.45215 -29.99929 -27.26426 -26.87464 -25.84332 -24.81019 -22.24929 -20.98570 -19.56529 -18.96976 -17.75991 -17.42594 -16.61238 -15.46709 -15.34831 -15.16575 -14.38291 -14.30887 -14.17250 -14.09264 -13.43241 -13.34616 -13.10268 -12.78048 -12.60659 -12.31508 -12.14679 -11.96318 -11.69483 -11.43187 -10.98288 -10.94845 -10.84937 -10.66754 -10.58842 -10.42875 -10.15609 -10.12016 -9.80187 -9.25088 -8.47063 -8.37223 -7.81119 -7.58371 -6.89410 -4.47755 2.11442 2.60780 3.08976 3.17778 3.29258 3.71432 3.95448 4.03124 4.33130 4.60407 4.71065 4.73981 4.94113 5.29722 5.38617 5.39772 5.43913 5.70669 5.73128 5.81626 5.86033 5.91227 6.00092 6.00694 6.08118 6.12688 6.31179 6.32313 6.42267 6.51784 6.80172 7.09335 7.12045 7.24069 7.40067 7.44187 7.59563 7.76544 8.02233 8.33577 8.48885 8.64897 8.87675 9.38092 10.07263 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.023777 B = 0.004797 C = 0.004253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1177.315906 B = 5835.644034 C = 6582.055440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.076 4.076 3 C -0.137 4.137 4 C 0.089 3.911 5 O -0.569 6.569 6 C 0.136 3.864 7 N -0.744 5.744 8 C 0.561 3.439 9 O -0.529 6.529 10 C -0.249 4.249 11 C -0.042 4.042 12 C -0.254 4.254 13 C -0.065 4.065 14 C -0.226 4.226 15 C 0.117 3.883 16 C -0.402 4.402 17 H 0.124 0.876 18 C 0.079 3.921 19 N -0.794 5.794 20 Si 0.907 3.093 21 H -0.268 1.268 22 H -0.243 1.243 23 H -0.289 1.289 24 H 0.056 0.944 25 H 0.063 0.937 26 H 0.054 0.946 27 H 0.054 0.946 28 H 0.063 0.937 29 H 0.056 0.944 30 H 0.048 0.952 31 H 0.048 0.952 32 H 0.377 0.623 33 H 0.062 0.938 34 H 0.062 0.938 35 H 0.391 0.609 36 H 0.094 0.906 37 H 0.096 0.904 38 H 0.096 0.904 39 H 0.104 0.896 40 H 0.287 0.713 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.944 5.894 -12.702 14.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.076 4.076 3 C -0.194 4.194 4 C 0.010 3.990 5 O -0.374 6.374 6 C 0.011 3.989 7 N -0.400 5.400 8 C 0.354 3.646 9 O -0.407 6.407 10 C -0.254 4.254 11 C -0.061 4.061 12 C -0.274 4.274 13 C -0.084 4.084 14 C -0.245 4.245 15 C 0.112 3.888 16 C -0.429 4.429 17 H 0.142 0.858 18 C -0.141 4.141 19 N -0.417 5.417 20 Si 0.733 3.267 21 H -0.194 1.194 22 H -0.166 1.166 23 H -0.216 1.216 24 H 0.075 0.925 25 H 0.082 0.918 26 H 0.073 0.927 27 H 0.073 0.927 28 H 0.082 0.918 29 H 0.075 0.925 30 H 0.066 0.934 31 H 0.067 0.933 32 H 0.223 0.777 33 H 0.080 0.920 34 H 0.080 0.920 35 H 0.227 0.773 36 H 0.112 0.888 37 H 0.115 0.885 38 H 0.114 0.886 39 H 0.122 0.878 40 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -3.579 5.277 -12.048 13.632 hybrid contribution -0.645 -0.025 0.102 0.654 sum -4.225 5.252 -11.947 13.717 Atomic orbital electron populations 1.21783 0.93590 1.02086 1.01962 1.20795 0.97033 0.96643 0.93144 1.21783 1.00919 0.94730 1.01955 1.22092 0.97292 0.94623 0.84961 1.86452 1.77567 1.57439 1.15959 1.21048 0.98790 0.95764 0.83255 1.45970 1.56113 1.32738 1.05180 1.18346 0.79966 0.83875 0.82440 1.90726 1.37809 1.26143 1.85996 1.19412 1.12434 1.00971 0.92543 1.20771 0.94858 0.93797 0.96632 1.20280 1.11589 1.02899 0.92595 1.20736 0.96106 0.95369 0.96198 1.21153 1.07753 0.97939 0.97649 1.17548 0.88760 0.92947 0.89504 1.20202 1.13025 0.99589 1.10065 0.85831 1.26378 0.98237 0.94565 0.94949 1.69570 1.35206 1.11278 1.25635 0.86393 0.82794 0.77324 0.80219 1.19425 1.16572 1.21614 0.92530 0.91823 0.92673 0.92691 0.91825 0.92545 0.93356 0.93341 0.77673 0.92003 0.91964 0.77287 0.88820 0.88542 0.88584 0.87784 0.90280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.58 8.15 37.16 0.30 -1.27 16 2 C -0.08 -0.89 0.61 -154.51 -0.09 -0.98 16 3 C -0.14 -1.55 8.16 37.16 0.30 -1.25 16 4 C 0.09 0.88 5.91 37.16 0.22 1.10 16 5 O -0.57 -5.30 12.31 -35.23 -0.43 -5.73 16 6 C 0.14 2.04 4.56 -4.04 -0.02 2.02 16 7 N -0.74 -12.90 4.91 -61.38 -0.30 -13.20 16 8 C 0.56 12.80 7.72 -12.51 -0.10 12.70 16 9 O -0.53 -14.13 13.53 5.26 0.07 -14.06 16 10 C -0.25 -5.87 5.92 -104.37 -0.62 -6.49 16 11 C -0.04 -0.84 9.52 -39.22 -0.37 -1.21 16 12 C -0.25 -5.02 10.03 -39.37 -0.39 -5.41 16 13 C -0.07 -1.37 10.01 -39.60 -0.40 -1.76 16 14 C -0.23 -5.37 7.00 -38.88 -0.27 -5.64 16 15 C 0.12 3.04 5.03 -106.55 -0.54 2.50 16 16 C -0.40 -11.36 8.31 -37.82 -0.31 -11.67 16 17 H 0.12 3.86 5.96 -52.48 -0.31 3.55 16 18 C 0.08 2.12 5.47 -17.30 -0.09 2.03 16 19 N -0.79 -21.67 13.92 55.56 0.77 -20.90 16 20 Si 0.91 20.85 24.52 -169.99 -4.17 16.68 16 21 H -0.27 -5.87 6.76 56.52 0.38 -5.48 16 22 H -0.24 -5.72 6.73 56.52 0.38 -5.34 16 23 H -0.29 -6.42 7.11 56.52 0.40 -6.02 16 24 H 0.06 0.66 6.86 -51.93 -0.36 0.30 16 25 H 0.06 0.71 7.68 -51.93 -0.40 0.31 16 26 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.06 0.70 7.68 -51.93 -0.40 0.30 16 29 H 0.06 0.64 6.86 -51.93 -0.36 0.29 16 30 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 31 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.38 1.83 9.12 45.56 0.42 2.25 16 33 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 34 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 35 H 0.39 5.90 4.21 -40.82 -0.17 5.73 16 36 H 0.09 1.54 6.42 -52.48 -0.34 1.20 16 37 H 0.10 1.62 8.06 -52.49 -0.42 1.20 16 38 H 0.10 1.71 8.06 -52.48 -0.42 1.29 16 39 H 0.10 2.44 5.01 -52.49 -0.26 2.17 16 40 H 0.29 7.02 8.29 -40.82 -0.34 6.68 16 LS Contribution 319.28 15.07 4.81 4.81 Total: -1.00 -31.35 319.28 -6.37 -37.72 By element: Atomic # 1 Polarization: 14.74 SS G_CDS: -4.74 Total: 10.01 kcal Atomic # 6 Polarization: -12.95 SS G_CDS: -2.38 Total: -15.34 kcal Atomic # 7 Polarization: -34.57 SS G_CDS: 0.47 Total: -34.10 kcal Atomic # 8 Polarization: -19.42 SS G_CDS: -0.36 Total: -19.79 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -4.17 Total: 16.68 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -31.35 -6.37 -37.72 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601352473.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.768 kcal (2) G-P(sol) polarization free energy of solvation -31.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.719 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.487 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds