Wall clock time and date at job start Mon Mar 30 2020 01:56:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.47099 * 2 1 4 4 C 1.53004 * 109.46836 * 240.00124 * 2 1 3 5 5 O 1.42902 * 109.47102 * 59.99885 * 4 2 1 6 6 C 1.52994 * 109.47235 * 119.99892 * 2 1 3 7 7 N 1.46500 * 109.47189 * 299.99675 * 6 2 1 8 8 C 1.34775 * 119.99983 * 179.97438 * 7 6 2 9 9 O 1.21616 * 120.00383 * 0.02562 * 8 7 6 10 10 C 1.47437 * 120.00283 * 180.02562 * 8 7 6 11 11 C 1.39227 * 120.28103 * 355.71208 * 10 8 7 12 12 C 1.38223 * 120.09427 * 180.27969 * 11 10 8 13 13 C 1.38824 * 120.66869 * 359.69405 * 12 11 10 14 14 C 1.37596 * 120.57733 * 359.97438 * 13 12 11 15 15 C 1.40709 * 119.87781 * 0.02562 * 14 13 12 16 16 C 1.40885 * 120.32254 * 179.97438 * 15 14 13 17 17 H 1.08003 * 119.99729 * 216.32445 * 16 15 14 18 18 C 1.40272 * 120.00475 * 36.32620 * 16 15 14 19 19 N 1.30628 * 120.00173 * 190.50975 * 18 16 15 20 20 Si 1.86800 * 119.99976 * 10.50597 * 18 16 15 21 21 H 1.48495 * 109.47236 * 267.22657 * 20 18 16 22 22 H 1.48498 * 109.46909 * 27.22603 * 20 18 16 23 23 H 1.48502 * 109.47265 * 147.22555 * 20 18 16 24 24 H 1.09004 * 109.46980 * 300.00448 * 1 2 3 25 25 H 1.09000 * 109.47288 * 59.99632 * 1 2 3 26 26 H 1.08996 * 109.47517 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.47136 * 180.02562 * 3 2 1 28 28 H 1.09007 * 109.47222 * 299.99959 * 3 2 1 29 29 H 1.09000 * 109.47346 * 60.00356 * 3 2 1 30 30 H 1.09001 * 109.46791 * 179.97438 * 4 2 1 31 31 H 1.09001 * 109.46985 * 299.99697 * 4 2 1 32 32 H 0.96699 * 113.99394 * 179.97438 * 5 4 2 33 33 H 1.09001 * 109.47209 * 180.02562 * 6 2 1 34 34 H 1.09001 * 109.47192 * 59.99932 * 6 2 1 35 35 H 0.97001 * 120.00283 * 0.02562 * 7 6 2 36 36 H 1.08004 * 119.95035 * 359.97438 * 11 10 8 37 37 H 1.07991 * 119.66384 * 179.72168 * 12 11 10 38 38 H 1.08003 * 119.70698 * 180.02562 * 13 12 11 39 39 H 1.07999 * 120.06224 * 180.02562 * 14 13 12 40 40 H 0.97002 * 120.00206 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 -1.2493 5 8 1.5635 -0.0476 -2.4161 6 6 2.0400 -0.7212 1.2492 7 7 1.5518 -0.0305 2.4454 8 6 1.8770 -0.4913 3.6695 9 8 2.5761 -1.4801 3.7811 10 6 1.3852 0.2034 4.8733 11 6 0.6594 1.3856 4.7544 12 6 0.2051 2.0368 5.8859 13 6 0.4590 1.5212 7.1496 14 6 1.1676 0.3512 7.2988 15 6 1.6412 -0.3312 6.1630 16 6 2.3683 -1.5296 6.3050 17 1 3.1854 -1.7482 5.6334 18 6 2.0309 -2.4388 7.3184 19 7 2.8220 -3.4438 7.5841 20 14 0.4505 -2.2125 8.2882 21 1 0.7307 -1.4225 9.5140 22 1 -0.5443 -1.4934 7.4525 23 1 -0.0913 -3.5417 8.6690 24 1 -0.3633 0.5139 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3634 -1.0276 0.0005 27 1 3.1300 1.4425 -0.0005 28 1 1.6766 1.9564 -0.8900 29 1 1.6767 1.9564 0.8900 30 1 3.1299 -0.7209 -1.2495 31 1 1.6766 -1.7489 -1.2493 32 1 1.8492 -0.4509 -3.2472 33 1 3.1300 -0.7208 1.2494 34 1 1.6767 -1.7489 1.2492 35 1 0.9938 0.7579 2.3564 36 1 0.4553 1.7970 3.7769 37 1 -0.3533 2.9556 5.7858 38 1 0.0964 2.0426 8.0232 39 1 1.3600 -0.0427 8.2859 40 1 2.5889 -4.0724 8.2852 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601352473.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:18 Heat of formation + Delta-G solvation = -100.081858 kcal Electronic energy + Delta-G solvation = -21652.655405 eV Core-core repulsion = 18430.697188 eV Total energy + Delta-G solvation = -3221.958217 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.98916 -39.48009 -38.48367 -36.55273 -35.55286 -33.97633 -32.28521 -31.65895 -28.17790 -27.98866 -27.32941 -26.27545 -23.93571 -22.75283 -21.22929 -20.08763 -19.40203 -18.59094 -18.03626 -17.20255 -16.70608 -16.39918 -15.83996 -15.78409 -15.66865 -15.55250 -14.97381 -14.58800 -14.47220 -14.35319 -14.05219 -13.79041 -13.47911 -13.27644 -13.03296 -12.71158 -12.68673 -12.51743 -12.19492 -12.05895 -11.94127 -11.81519 -11.60901 -11.49586 -11.08326 -10.85191 -10.33565 -9.98707 -9.51508 -9.40924 -8.81998 -6.48287 0.34542 0.83941 1.23874 1.37361 1.46512 2.10190 2.26327 2.37730 2.71858 3.37955 3.53832 3.75417 3.77244 4.06815 4.21622 4.27340 4.39697 4.44634 4.47620 4.59193 4.67713 4.75420 4.78092 4.85900 4.86139 5.00912 5.02294 5.04740 5.14029 5.30134 5.39142 5.39565 5.47104 5.61466 5.69321 5.87307 5.96882 6.27547 6.47918 6.67208 6.79217 6.91397 6.93790 7.64107 8.22251 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.023777 B = 0.004797 C = 0.004253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1177.315906 B = 5835.644034 C = 6582.055440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.069 4.069 3 C -0.134 4.134 4 C 0.092 3.908 5 O -0.579 6.579 6 C 0.135 3.865 7 N -0.720 5.720 8 C 0.553 3.447 9 O -0.579 6.579 10 C -0.267 4.267 11 C -0.040 4.040 12 C -0.230 4.230 13 C -0.061 4.061 14 C -0.247 4.247 15 C 0.100 3.900 16 C -0.451 4.451 17 H 0.072 0.928 18 C 0.036 3.964 19 N -0.849 5.849 20 Si 0.967 3.033 21 H -0.248 1.248 22 H -0.250 1.250 23 H -0.280 1.280 24 H 0.055 0.945 25 H 0.072 0.928 26 H 0.050 0.950 27 H 0.052 0.948 28 H 0.071 0.929 29 H 0.056 0.944 30 H 0.054 0.946 31 H 0.052 0.948 32 H 0.397 0.603 33 H 0.052 0.948 34 H 0.050 0.950 35 H 0.406 0.594 36 H 0.137 0.863 37 H 0.145 0.855 38 H 0.137 0.863 39 H 0.102 0.898 40 H 0.293 0.707 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.809 9.392 -13.651 17.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.069 4.069 3 C -0.191 4.191 4 C 0.013 3.987 5 O -0.387 6.387 6 C 0.011 3.989 7 N -0.376 5.376 8 C 0.346 3.654 9 O -0.460 6.460 10 C -0.271 4.271 11 C -0.059 4.059 12 C -0.248 4.248 13 C -0.080 4.080 14 C -0.266 4.266 15 C 0.097 3.903 16 C -0.480 4.480 17 H 0.090 0.910 18 C -0.178 4.178 19 N -0.476 5.476 20 Si 0.790 3.210 21 H -0.172 1.172 22 H -0.173 1.173 23 H -0.207 1.207 24 H 0.074 0.926 25 H 0.091 0.909 26 H 0.069 0.931 27 H 0.071 0.929 28 H 0.090 0.910 29 H 0.075 0.925 30 H 0.072 0.928 31 H 0.071 0.929 32 H 0.247 0.753 33 H 0.071 0.929 34 H 0.068 0.932 35 H 0.244 0.756 36 H 0.155 0.845 37 H 0.162 0.838 38 H 0.155 0.845 39 H 0.120 0.880 40 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -6.457 8.819 -13.050 17.023 hybrid contribution 0.177 -0.815 0.153 0.848 sum -6.280 8.004 -12.897 16.427 Atomic orbital electron populations 1.21765 0.93075 1.01990 1.02329 1.20715 0.97311 0.96748 0.92154 1.21764 1.00802 0.94194 1.02347 1.21967 0.97570 0.94509 0.84642 1.86385 1.77761 1.57814 1.16698 1.21163 0.98320 0.95604 0.83827 1.45715 1.54964 1.32638 1.04273 1.18532 0.79506 0.83351 0.84002 1.90729 1.40033 1.28335 1.86897 1.19810 1.12813 1.02378 0.92134 1.21211 0.93195 0.92138 0.99344 1.20940 1.08921 1.03411 0.91573 1.21252 0.94268 0.93885 0.98561 1.21259 1.09144 0.99360 0.96840 1.17808 0.88681 0.92366 0.91490 1.19960 1.14454 1.02324 1.11262 0.90983 1.27106 1.01075 0.93916 0.95658 1.69626 1.37340 1.12971 1.27639 0.85484 0.78545 0.77723 0.79286 1.17226 1.17331 1.20690 0.92570 0.90946 0.93070 0.92932 0.90979 0.92508 0.92813 0.92927 0.75307 0.92948 0.93155 0.75556 0.84513 0.83751 0.84536 0.88028 0.89650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.77 8.15 71.98 0.59 -2.18 16 2 C -0.07 -1.49 0.61 -52.18 -0.03 -1.52 16 3 C -0.13 -2.70 8.16 71.98 0.59 -2.12 16 4 C 0.09 1.65 5.91 71.98 0.43 2.07 16 5 O -0.58 -9.22 12.31 -148.98 -1.83 -11.05 16 6 C 0.14 4.03 4.56 86.38 0.39 4.42 16 7 N -0.72 -24.42 4.91 -466.36 -2.29 -26.71 16 8 C 0.55 25.86 7.72 86.67 0.67 26.53 16 9 O -0.58 -33.09 13.53 -4.08 -0.06 -33.15 16 10 C -0.27 -12.45 5.92 -19.70 -0.12 -12.56 16 11 C -0.04 -1.45 9.52 22.50 0.21 -1.24 16 12 C -0.23 -7.66 10.03 22.41 0.22 -7.44 16 13 C -0.06 -2.28 10.01 22.26 0.22 -2.05 16 14 C -0.25 -11.39 7.00 22.72 0.16 -11.24 16 15 C 0.10 5.31 5.03 -21.11 -0.11 5.21 16 16 C -0.45 -27.37 8.31 23.41 0.19 -27.17 16 17 H 0.07 5.00 5.96 -2.91 -0.02 4.98 16 18 C 0.04 2.07 5.47 85.37 0.47 2.54 16 19 N -0.85 -49.89 13.92 21.88 0.30 -49.58 16 20 Si 0.97 44.01 24.52 68.60 1.68 45.69 16 21 H -0.25 -10.26 6.76 99.48 0.67 -9.59 16 22 H -0.25 -11.43 6.73 99.48 0.67 -10.76 16 23 H -0.28 -12.10 7.11 99.48 0.71 -11.39 16 24 H 0.06 1.14 6.86 -2.38 -0.02 1.12 16 25 H 0.07 1.40 7.68 -2.39 -0.02 1.38 16 26 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 27 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 28 H 0.07 1.37 7.68 -2.38 -0.02 1.35 16 29 H 0.06 1.12 6.86 -2.39 -0.02 1.10 16 30 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 31 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 32 H 0.40 2.79 9.12 -74.06 -0.68 2.12 16 33 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 34 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 35 H 0.41 11.13 4.21 -92.71 -0.39 10.74 16 36 H 0.14 3.69 6.42 -2.91 -0.02 3.67 16 37 H 0.14 3.60 8.06 -2.92 -0.02 3.57 16 38 H 0.14 4.00 8.06 -2.91 -0.02 3.98 16 39 H 0.10 4.67 5.01 -2.91 -0.01 4.65 16 40 H 0.29 15.35 8.29 -92.71 -0.77 14.58 16 Total: -1.00 -74.48 319.28 1.63 -72.85 By element: Atomic # 1 Polarization: 28.77 SS G_CDS: -0.07 Total: 28.70 kcal Atomic # 6 Polarization: -30.64 SS G_CDS: 3.89 Total: -26.75 kcal Atomic # 7 Polarization: -74.31 SS G_CDS: -1.98 Total: -76.29 kcal Atomic # 8 Polarization: -42.31 SS G_CDS: -1.89 Total: -44.20 kcal Atomic # 14 Polarization: 44.01 SS G_CDS: 1.68 Total: 45.69 kcal Total: -74.48 1.63 -72.85 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601352473.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.231 kcal (2) G-P(sol) polarization free energy of solvation -74.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.851 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds