Wall clock time and date at job start Mon Mar 30 2020 01:53:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53001 * 109.46481 * 2 1 4 4 C 1.52996 * 109.47065 * 119.99839 * 2 1 3 5 5 H 1.08999 * 109.47342 * 300.00209 * 4 2 1 6 6 C 1.52991 * 109.47322 * 60.00699 * 4 2 1 7 7 O 1.42902 * 109.47323 * 54.99569 * 6 4 2 8 8 N 1.46507 * 109.46657 * 180.02562 * 4 2 1 9 9 C 1.34782 * 119.99875 * 155.00134 * 8 4 2 10 10 O 1.21608 * 119.99869 * 0.02562 * 9 8 4 11 11 C 1.47431 * 119.99779 * 179.97438 * 9 8 4 12 12 C 1.39225 * 120.28374 * 354.15792 * 11 9 8 13 13 C 1.38224 * 120.08819 * 180.25298 * 12 11 9 14 14 C 1.38830 * 120.67735 * 359.44878 * 13 12 11 15 15 C 1.37591 * 120.56688 * 0.55721 * 14 13 12 16 16 C 1.40705 * 119.88805 * 359.72194 * 15 14 13 17 17 C 1.40880 * 120.33175 * 180.02562 * 16 15 14 18 18 H 1.08003 * 120.00510 * 145.82319 * 17 16 15 19 19 C 1.40274 * 120.00202 * 325.82575 * 17 16 15 20 20 N 1.30635 * 119.99795 * 350.76332 * 19 17 16 21 21 Si 1.86799 * 120.00405 * 170.76098 * 19 17 16 22 22 H 1.48508 * 109.47073 * 60.00066 * 21 19 17 23 23 H 1.48500 * 109.47265 * 180.02562 * 21 19 17 24 24 H 1.48507 * 109.47100 * 300.00252 * 21 19 17 25 25 H 1.08999 * 109.47211 * 299.99872 * 1 2 3 26 26 H 1.08995 * 109.46978 * 60.00123 * 1 2 3 27 27 H 1.09002 * 109.46475 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47211 * 240.00128 * 2 1 3 29 29 H 1.08995 * 109.47414 * 299.99610 * 3 2 1 30 30 H 1.08999 * 109.47294 * 60.00178 * 3 2 1 31 31 H 1.09006 * 109.46776 * 179.97438 * 3 2 1 32 32 H 1.09003 * 109.47507 * 174.99955 * 6 4 2 33 33 H 1.09004 * 109.46750 * 294.99521 * 6 4 2 34 34 H 0.96703 * 114.00043 * 180.02562 * 7 6 4 35 35 H 0.96994 * 120.00055 * 334.99769 * 8 4 2 36 36 H 1.07993 * 119.95316 * 359.97438 * 12 11 9 37 37 H 1.08003 * 119.65622 * 179.70414 * 13 12 11 38 38 H 1.07992 * 119.71189 * 180.29840 * 14 13 12 39 39 H 1.08004 * 120.05655 * 179.74438 * 15 14 13 40 40 H 0.97005 * 119.99944 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 1.2492 5 1 1.6767 -0.2074 2.1392 6 6 1.5302 -2.1637 1.2492 7 8 1.9083 -2.8026 0.0282 8 7 3.5051 -0.7206 1.2495 9 6 4.1788 -0.8222 2.4124 10 8 3.5706 -0.9149 3.4613 11 6 5.6532 -0.8222 2.4125 12 6 6.3554 -0.8400 1.2104 13 6 7.7376 -0.8452 1.2154 14 6 8.4417 -0.8213 2.4116 15 6 7.7756 -0.8036 3.6154 16 6 6.3688 -0.8037 3.6383 17 6 5.6772 -0.7851 4.8656 18 1 4.7378 -0.2587 4.9482 19 6 6.2087 -1.4503 5.9803 20 7 7.2447 -2.2338 5.8407 21 14 5.4353 -1.2157 7.6645 22 1 4.0184 -1.6585 7.6245 23 1 6.1781 -2.0212 8.6668 24 1 5.4950 0.2196 8.0410 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3632 -1.0277 0.0005 28 1 1.8934 -0.5138 -0.8900 29 1 1.6766 1.9564 -0.8900 30 1 1.6765 1.9564 0.8900 31 1 3.1300 1.4426 0.0005 32 1 1.9648 -2.7027 2.0911 33 1 0.4439 -2.1650 1.3388 34 1 1.6171 -3.7221 -0.0412 35 1 3.9902 -0.6471 0.4127 36 1 5.8194 -0.8543 0.2730 37 1 8.2752 -0.8638 0.2789 38 1 9.5216 -0.8209 2.3972 39 1 8.3317 -0.7893 4.5412 40 1 7.6125 -2.6935 6.6117 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601396033.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:55 Heat of formation + Delta-G solvation = -80.986620 kcal Electronic energy + Delta-G solvation = -21949.148251 eV Core-core repulsion = 18728.018066 eV Total energy + Delta-G solvation = -3221.130185 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.33229 -37.68585 -36.37678 -35.25080 -33.74443 -32.54260 -30.01641 -29.56847 -28.20825 -26.80960 -25.32766 -23.30363 -21.90008 -20.86198 -19.87019 -19.17817 -17.48022 -17.15217 -16.29630 -15.65018 -15.23179 -14.83506 -14.64526 -14.17885 -13.86419 -13.45517 -13.32206 -12.96380 -12.68811 -12.67336 -12.41227 -12.15061 -12.00698 -11.80882 -11.52572 -11.09576 -11.03063 -10.95588 -10.68031 -10.64758 -10.49405 -10.44485 -10.04169 -9.78549 -9.63335 -9.23043 -8.40154 -8.23101 -7.54275 -7.31421 -6.76515 -4.35072 2.40711 2.85554 3.10312 3.16270 3.27154 3.98206 3.99723 4.19049 4.51328 4.72240 4.80729 5.01872 5.16407 5.49324 5.53201 5.61297 5.68024 5.71385 5.83958 5.89593 5.95662 6.00883 6.06161 6.18447 6.20324 6.33340 6.38915 6.48608 6.69005 6.99886 7.14080 7.22128 7.30163 7.50506 7.67152 7.75353 7.93271 8.02629 8.21831 8.46992 8.70130 8.86076 8.93747 9.47191 10.18979 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.017010 B = 0.005845 C = 0.004901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1645.701283 B = 4789.049457 C = 5711.911939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.099 4.099 3 C -0.147 4.147 4 C 0.158 3.842 5 H 0.093 0.907 6 C 0.062 3.938 7 O -0.567 6.567 8 N -0.734 5.734 9 C 0.566 3.434 10 O -0.543 6.543 11 C -0.260 4.260 12 C -0.056 4.056 13 C -0.246 4.246 14 C -0.096 4.096 15 C -0.149 4.149 16 C 0.146 3.854 17 C -0.417 4.417 18 H 0.104 0.896 19 C 0.069 3.931 20 N -0.795 5.795 21 Si 0.916 3.084 22 H -0.262 1.262 23 H -0.280 1.280 24 H -0.263 1.263 25 H 0.054 0.946 26 H 0.054 0.946 27 H 0.056 0.944 28 H 0.081 0.919 29 H 0.051 0.949 30 H 0.054 0.946 31 H 0.059 0.941 32 H 0.053 0.947 33 H 0.047 0.953 34 H 0.372 0.628 35 H 0.393 0.607 36 H 0.090 0.910 37 H 0.090 0.910 38 H 0.090 0.910 39 H 0.117 0.883 40 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.665 1.737 -8.353 12.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.118 4.118 3 C -0.204 4.204 4 C 0.052 3.948 5 H 0.111 0.889 6 C -0.017 4.017 7 O -0.372 6.372 8 N -0.388 5.388 9 C 0.360 3.640 10 O -0.422 6.422 11 C -0.265 4.265 12 C -0.075 4.075 13 C -0.266 4.266 14 C -0.115 4.115 15 C -0.168 4.168 16 C 0.142 3.858 17 C -0.445 4.445 18 H 0.122 0.878 19 C -0.149 4.149 20 N -0.420 5.420 21 Si 0.741 3.259 22 H -0.187 1.187 23 H -0.205 1.205 24 H -0.188 1.188 25 H 0.073 0.927 26 H 0.073 0.927 27 H 0.075 0.925 28 H 0.099 0.901 29 H 0.070 0.930 30 H 0.073 0.927 31 H 0.078 0.922 32 H 0.071 0.929 33 H 0.065 0.935 34 H 0.218 0.782 35 H 0.228 0.772 36 H 0.108 0.892 37 H 0.108 0.892 38 H 0.109 0.891 39 H 0.135 0.865 40 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -8.690 2.106 -7.542 11.697 hybrid contribution -0.219 -0.719 0.409 0.855 sum -8.909 1.387 -7.133 11.496 Atomic orbital electron populations 1.21820 0.94878 1.01764 1.01630 1.21261 0.95840 0.96168 0.98497 1.21836 1.01720 0.95554 1.01325 1.20871 0.82122 0.93074 0.98696 0.88878 1.22734 0.97504 0.94828 0.86666 1.86463 1.81809 1.29539 1.39359 1.45965 1.05144 1.77977 1.09701 1.18432 0.88084 0.75134 0.82379 1.90661 1.70235 1.50355 1.30935 1.19474 0.90567 1.22293 0.94180 1.20665 0.94122 0.97488 0.95220 1.20283 0.93633 1.16241 0.96399 1.20795 0.97581 0.99768 0.93312 1.21343 0.94484 1.04589 0.96399 1.17477 0.91309 0.85672 0.91360 1.20115 1.06294 1.25619 0.92461 0.87813 1.26112 0.93874 0.93501 1.01366 1.69718 1.19354 1.20130 1.32794 0.86228 0.80292 0.79423 0.80004 1.18690 1.20497 1.18800 0.92721 0.92662 0.92456 0.90062 0.92968 0.92736 0.92176 0.92916 0.93504 0.78212 0.77208 0.89224 0.89163 0.89146 0.86532 0.90734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.48 8.84 37.16 0.33 -1.15 16 2 C -0.10 -1.22 2.36 -90.62 -0.21 -1.44 16 3 C -0.15 -1.78 9.04 37.16 0.34 -1.44 16 4 C 0.16 2.45 1.95 -67.93 -0.13 2.32 16 5 H 0.09 1.58 7.58 -51.93 -0.39 1.19 16 6 C 0.06 0.89 6.34 37.15 0.24 1.13 16 7 O -0.57 -7.59 12.73 -35.23 -0.45 -8.04 16 8 N -0.73 -13.39 4.28 -54.88 -0.23 -13.62 16 9 C 0.57 13.17 7.68 -12.51 -0.10 13.07 16 10 O -0.54 -14.20 13.26 5.27 0.07 -14.13 16 11 C -0.26 -6.45 5.92 -104.37 -0.62 -7.07 16 12 C -0.06 -1.23 9.52 -39.22 -0.37 -1.60 16 13 C -0.25 -5.35 10.03 -39.37 -0.39 -5.74 16 14 C -0.10 -2.19 10.01 -39.60 -0.40 -2.59 16 15 C -0.15 -3.83 8.62 -38.89 -0.34 -4.17 16 16 C 0.15 3.96 5.51 -106.54 -0.59 3.37 16 17 C -0.42 -11.53 7.67 -37.82 -0.29 -11.82 16 18 H 0.10 2.96 5.92 -52.48 -0.31 2.65 16 19 C 0.07 1.80 5.25 -17.30 -0.09 1.71 16 20 N -0.79 -20.84 11.14 55.56 0.62 -20.22 16 21 Si 0.92 19.81 29.57 -169.99 -5.03 14.79 16 22 H -0.26 -5.80 7.11 56.52 0.40 -5.40 16 23 H -0.28 -5.77 7.11 56.52 0.40 -5.37 16 24 H -0.26 -5.57 7.11 56.52 0.40 -5.17 16 25 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.06 0.57 6.54 -51.93 -0.34 0.23 16 28 H 0.08 1.05 7.56 -51.93 -0.39 0.65 16 29 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 30 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.06 0.79 7.44 -51.93 -0.39 0.40 16 32 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 33 H 0.05 0.56 6.71 -51.93 -0.35 0.21 16 34 H 0.37 3.42 9.12 45.56 0.42 3.83 16 35 H 0.39 6.60 6.45 -40.82 -0.26 6.34 16 36 H 0.09 1.66 6.44 -52.49 -0.34 1.33 16 37 H 0.09 1.71 8.06 -52.48 -0.42 1.28 16 38 H 0.09 1.82 8.06 -52.49 -0.42 1.40 16 39 H 0.12 3.06 6.60 -52.48 -0.35 2.71 16 40 H 0.28 6.74 8.29 -40.82 -0.34 6.40 16 LS Contribution 326.52 15.07 4.92 4.92 Total: -1.00 -30.43 326.52 -7.53 -37.96 By element: Atomic # 1 Polarization: 18.55 SS G_CDS: -4.80 Total: 13.75 kcal Atomic # 6 Polarization: -12.78 SS G_CDS: -2.63 Total: -15.41 kcal Atomic # 7 Polarization: -34.23 SS G_CDS: 0.38 Total: -33.84 kcal Atomic # 8 Polarization: -21.79 SS G_CDS: -0.38 Total: -22.16 kcal Atomic # 14 Polarization: 19.81 SS G_CDS: -5.03 Total: 14.79 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -30.43 -7.53 -37.96 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601396033.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.028 kcal (2) G-P(sol) polarization free energy of solvation -30.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.958 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds