Wall clock time and date at job start Mon Mar 30 2020 01:53:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53001 * 109.46481 * 2 1 4 4 C 1.52996 * 109.47065 * 119.99839 * 2 1 3 5 5 H 1.08999 * 109.47342 * 300.00209 * 4 2 1 6 6 C 1.52991 * 109.47322 * 60.00699 * 4 2 1 7 7 O 1.42902 * 109.47323 * 54.99569 * 6 4 2 8 8 N 1.46507 * 109.46657 * 180.02562 * 4 2 1 9 9 C 1.34782 * 119.99875 * 155.00134 * 8 4 2 10 10 O 1.21608 * 119.99869 * 0.02562 * 9 8 4 11 11 C 1.47431 * 119.99779 * 179.97438 * 9 8 4 12 12 C 1.39225 * 120.28374 * 354.15792 * 11 9 8 13 13 C 1.38224 * 120.08819 * 180.25298 * 12 11 9 14 14 C 1.38830 * 120.67735 * 359.44878 * 13 12 11 15 15 C 1.37591 * 120.56688 * 0.55721 * 14 13 12 16 16 C 1.40705 * 119.88805 * 359.72194 * 15 14 13 17 17 C 1.40880 * 120.33175 * 180.02562 * 16 15 14 18 18 H 1.08003 * 120.00510 * 145.82319 * 17 16 15 19 19 C 1.40274 * 120.00202 * 325.82575 * 17 16 15 20 20 N 1.30635 * 119.99795 * 350.76332 * 19 17 16 21 21 Si 1.86799 * 120.00405 * 170.76098 * 19 17 16 22 22 H 1.48508 * 109.47073 * 60.00066 * 21 19 17 23 23 H 1.48500 * 109.47265 * 180.02562 * 21 19 17 24 24 H 1.48507 * 109.47100 * 300.00252 * 21 19 17 25 25 H 1.08999 * 109.47211 * 299.99872 * 1 2 3 26 26 H 1.08995 * 109.46978 * 60.00123 * 1 2 3 27 27 H 1.09002 * 109.46475 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47211 * 240.00128 * 2 1 3 29 29 H 1.08995 * 109.47414 * 299.99610 * 3 2 1 30 30 H 1.08999 * 109.47294 * 60.00178 * 3 2 1 31 31 H 1.09006 * 109.46776 * 179.97438 * 3 2 1 32 32 H 1.09003 * 109.47507 * 174.99955 * 6 4 2 33 33 H 1.09004 * 109.46750 * 294.99521 * 6 4 2 34 34 H 0.96703 * 114.00043 * 180.02562 * 7 6 4 35 35 H 0.96994 * 120.00055 * 334.99769 * 8 4 2 36 36 H 1.07993 * 119.95316 * 359.97438 * 12 11 9 37 37 H 1.08003 * 119.65622 * 179.70414 * 13 12 11 38 38 H 1.07992 * 119.71189 * 180.29840 * 14 13 12 39 39 H 1.08004 * 120.05655 * 179.74438 * 15 14 13 40 40 H 0.97005 * 119.99944 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 1.2492 5 1 1.6767 -0.2074 2.1392 6 6 1.5302 -2.1637 1.2492 7 8 1.9083 -2.8026 0.0282 8 7 3.5051 -0.7206 1.2495 9 6 4.1788 -0.8222 2.4124 10 8 3.5706 -0.9149 3.4613 11 6 5.6532 -0.8222 2.4125 12 6 6.3554 -0.8400 1.2104 13 6 7.7376 -0.8452 1.2154 14 6 8.4417 -0.8213 2.4116 15 6 7.7756 -0.8036 3.6154 16 6 6.3688 -0.8037 3.6383 17 6 5.6772 -0.7851 4.8656 18 1 4.7378 -0.2587 4.9482 19 6 6.2087 -1.4503 5.9803 20 7 7.2447 -2.2338 5.8407 21 14 5.4353 -1.2157 7.6645 22 1 4.0184 -1.6585 7.6245 23 1 6.1781 -2.0212 8.6668 24 1 5.4950 0.2196 8.0410 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3632 -1.0277 0.0005 28 1 1.8934 -0.5138 -0.8900 29 1 1.6766 1.9564 -0.8900 30 1 1.6765 1.9564 0.8900 31 1 3.1300 1.4426 0.0005 32 1 1.9648 -2.7027 2.0911 33 1 0.4439 -2.1650 1.3388 34 1 1.6171 -3.7221 -0.0412 35 1 3.9902 -0.6471 0.4127 36 1 5.8194 -0.8543 0.2730 37 1 8.2752 -0.8638 0.2789 38 1 9.5216 -0.8209 2.3972 39 1 8.3317 -0.7893 4.5412 40 1 7.6125 -2.6935 6.6117 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601396033.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:54 Heat of formation + Delta-G solvation = -101.771413 kcal Electronic energy + Delta-G solvation = -21950.049547 eV Core-core repulsion = 18728.018066 eV Total energy + Delta-G solvation = -3222.031481 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.94636 -39.20845 -38.03871 -36.38963 -35.61186 -34.06707 -31.83090 -31.35388 -29.47069 -27.87177 -27.15845 -24.70935 -23.49550 -22.65840 -21.21286 -20.77041 -19.33144 -18.30347 -17.94996 -17.14294 -17.02785 -16.14989 -15.97144 -15.82965 -15.47214 -15.09215 -14.85517 -14.48237 -14.30453 -13.98323 -13.77335 -13.48342 -13.26625 -13.06270 -12.87132 -12.84279 -12.81096 -12.49853 -12.30082 -11.97300 -11.90436 -11.70046 -11.54588 -11.43944 -11.13551 -10.90731 -10.22525 -9.86156 -9.37923 -9.21701 -8.66747 -6.35188 0.53691 1.02300 1.32609 1.44284 1.50772 2.20684 2.37665 2.49202 2.79954 3.42685 3.71387 3.74323 3.99303 4.16614 4.33481 4.34560 4.42467 4.47941 4.59011 4.61472 4.73147 4.82557 4.86913 4.95800 5.04630 5.06447 5.11439 5.24234 5.25407 5.35164 5.43982 5.48143 5.62696 5.76767 5.84268 6.07011 6.11541 6.35125 6.65876 6.82156 6.87237 6.93817 7.03170 7.70550 8.30809 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.017010 B = 0.005845 C = 0.004901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1645.701283 B = 4789.049457 C = 5711.911939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.088 4.088 3 C -0.147 4.147 4 C 0.150 3.850 5 H 0.073 0.927 6 C 0.070 3.930 7 O -0.573 6.573 8 N -0.715 5.715 9 C 0.561 3.439 10 O -0.581 6.581 11 C -0.280 4.280 12 C -0.055 4.055 13 C -0.237 4.237 14 C -0.092 4.092 15 C -0.177 4.177 16 C 0.114 3.886 17 C -0.456 4.456 18 H 0.082 0.918 19 C 0.031 3.969 20 N -0.824 5.824 21 Si 0.978 3.022 22 H -0.273 1.273 23 H -0.259 1.259 24 H -0.257 1.257 25 H 0.054 0.946 26 H 0.073 0.927 27 H 0.062 0.938 28 H 0.084 0.916 29 H 0.075 0.925 30 H 0.045 0.955 31 H 0.045 0.955 32 H 0.016 0.984 33 H 0.077 0.923 34 H 0.392 0.608 35 H 0.403 0.597 36 H 0.127 0.873 37 H 0.131 0.869 38 H 0.120 0.880 39 H 0.100 0.900 40 H 0.289 0.711 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.251 1.804 -10.772 14.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.107 4.107 3 C -0.204 4.204 4 C 0.045 3.955 5 H 0.091 0.909 6 C -0.009 4.009 7 O -0.381 6.381 8 N -0.368 5.368 9 C 0.354 3.646 10 O -0.462 6.462 11 C -0.285 4.285 12 C -0.073 4.073 13 C -0.256 4.256 14 C -0.111 4.111 15 C -0.196 4.196 16 C 0.111 3.889 17 C -0.485 4.485 18 H 0.099 0.901 19 C -0.183 4.183 20 N -0.451 5.451 21 Si 0.800 3.200 22 H -0.198 1.198 23 H -0.183 1.183 24 H -0.181 1.181 25 H 0.073 0.927 26 H 0.092 0.908 27 H 0.081 0.919 28 H 0.102 0.898 29 H 0.094 0.906 30 H 0.065 0.935 31 H 0.064 0.936 32 H 0.035 0.965 33 H 0.095 0.905 34 H 0.241 0.759 35 H 0.239 0.761 36 H 0.145 0.855 37 H 0.149 0.851 38 H 0.138 0.862 39 H 0.118 0.882 40 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -9.279 2.163 -10.019 13.826 hybrid contribution -0.032 -0.740 0.909 1.172 sum -9.311 1.424 -9.110 13.104 Atomic orbital electron populations 1.21810 0.92879 1.02490 1.02603 1.21204 0.97365 0.95689 0.96395 1.21844 1.00828 0.95610 1.02126 1.21132 0.80155 0.94445 0.99795 0.90890 1.22521 0.98911 0.93511 0.85926 1.86402 1.82182 1.31239 1.38241 1.45757 1.06507 1.76064 1.08427 1.18416 0.87939 0.75051 0.83169 1.90637 1.70801 1.52160 1.32651 1.19876 0.91814 1.22011 0.94753 1.21045 0.94674 0.96036 0.95573 1.20788 0.93728 1.13584 0.97502 1.21172 0.99264 0.97897 0.92763 1.21292 0.94158 1.07069 0.97127 1.17866 0.92355 0.86424 0.92298 1.20081 1.06264 1.27920 0.94256 0.90054 1.26801 0.94388 0.92813 1.04340 1.69746 1.20495 1.20900 1.33935 0.85318 0.78763 0.79806 0.76151 1.19818 1.18317 1.18135 0.92737 0.90755 0.91870 0.89753 0.90579 0.93547 0.93559 0.96545 0.90473 0.75907 0.76102 0.85499 0.85076 0.86213 0.88192 0.90054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.48 8.84 71.98 0.64 -1.84 16 2 C -0.09 -1.97 2.36 -10.79 -0.03 -2.00 16 3 C -0.15 -3.27 9.04 71.98 0.65 -2.62 16 4 C 0.15 4.55 1.95 44.99 0.09 4.64 16 5 H 0.07 2.54 7.58 -2.39 -0.02 2.52 16 6 C 0.07 1.96 6.34 71.98 0.46 2.42 16 7 O -0.57 -14.04 12.73 -148.98 -1.90 -15.94 16 8 N -0.72 -25.78 4.28 -445.79 -1.91 -27.69 16 9 C 0.56 26.82 7.68 86.66 0.67 27.49 16 10 O -0.58 -31.99 13.26 -4.06 -0.05 -32.04 16 11 C -0.28 -14.06 5.92 -19.70 -0.12 -14.18 16 12 C -0.05 -2.29 9.52 22.50 0.21 -2.07 16 13 C -0.24 -9.57 10.03 22.41 0.22 -9.35 16 14 C -0.09 -4.11 10.01 22.26 0.22 -3.89 16 15 C -0.18 -9.34 8.62 22.72 0.20 -9.14 16 16 C 0.11 6.45 5.51 -21.11 -0.12 6.33 16 17 C -0.46 -26.75 7.67 23.41 0.18 -26.57 16 18 H 0.08 4.99 5.92 -2.91 -0.02 4.98 16 19 C 0.03 1.69 5.25 85.37 0.45 2.14 16 20 N -0.82 -44.91 11.14 21.88 0.24 -44.67 16 21 Si 0.98 42.28 29.57 68.60 2.03 44.31 16 22 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 23 H -0.26 -10.20 7.11 99.48 0.71 -9.49 16 24 H -0.26 -10.70 7.11 99.48 0.71 -10.00 16 25 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 26 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 27 H 0.06 1.05 6.54 -2.39 -0.02 1.03 16 28 H 0.08 1.90 7.56 -2.39 -0.02 1.88 16 29 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 30 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 31 H 0.05 1.14 7.44 -2.38 -0.02 1.12 16 32 H 0.02 0.57 8.14 -2.39 -0.02 0.55 16 33 H 0.08 1.69 6.71 -2.39 -0.02 1.68 16 34 H 0.39 6.23 9.12 -74.06 -0.68 5.55 16 35 H 0.40 12.80 6.45 -92.71 -0.60 12.21 16 36 H 0.13 4.27 6.44 -2.91 -0.02 4.25 16 37 H 0.13 4.26 8.06 -2.91 -0.02 4.24 16 38 H 0.12 4.54 8.06 -2.91 -0.02 4.51 16 39 H 0.10 5.49 6.60 -2.91 -0.02 5.47 16 40 H 0.29 14.23 8.29 -92.70 -0.77 13.46 16 Total: -1.00 -69.65 326.52 1.93 -67.72 By element: Atomic # 1 Polarization: 37.15 SS G_CDS: -0.21 Total: 36.94 kcal Atomic # 6 Polarization: -32.36 SS G_CDS: 3.72 Total: -28.63 kcal Atomic # 7 Polarization: -70.69 SS G_CDS: -1.66 Total: -72.36 kcal Atomic # 8 Polarization: -46.03 SS G_CDS: -1.95 Total: -47.98 kcal Atomic # 14 Polarization: 42.28 SS G_CDS: 2.03 Total: 44.31 kcal Total: -69.65 1.93 -67.72 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601396033.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.054 kcal (2) G-P(sol) polarization free energy of solvation -69.651 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.933 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.718 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds