Wall clock time and date at job start Mon Mar 30 2020 01:31:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53005 * 109.46751 * 2 1 4 4 O 1.42899 * 109.47016 * 240.00356 * 2 1 3 5 5 C 1.52999 * 109.47248 * 119.99791 * 2 1 3 6 6 C 1.52995 * 109.47191 * 60.00480 * 5 2 1 7 7 N 1.46494 * 109.47394 * 179.97438 * 6 5 2 8 8 C 1.34776 * 120.00009 * 179.97438 * 7 6 5 9 9 O 1.21609 * 120.00181 * 0.02562 * 8 7 6 10 10 C 1.47435 * 119.99851 * 180.02562 * 8 7 6 11 11 C 1.39227 * 120.28510 * 356.68670 * 10 8 7 12 12 C 1.38223 * 120.09723 * 180.28291 * 11 10 8 13 13 C 1.38826 * 120.67197 * 359.69417 * 12 11 10 14 14 C 1.37607 * 120.57000 * 0.02562 * 13 12 11 15 15 C 1.40702 * 119.88222 * 0.02562 * 14 13 12 16 16 C 1.40891 * 120.32820 * 179.97438 * 15 14 13 17 17 H 1.07998 * 119.99743 * 145.79457 * 16 15 14 18 18 C 1.40273 * 119.99861 * 325.79822 * 16 15 14 19 19 N 1.30629 * 119.99711 * 340.74144 * 18 16 15 20 20 Si 1.86800 * 120.00012 * 160.74702 * 18 16 15 21 21 H 1.48505 * 109.46791 * 269.99431 * 20 18 16 22 22 H 1.48496 * 109.47300 * 29.99461 * 20 18 16 23 23 H 1.48496 * 109.47010 * 149.99877 * 20 18 16 24 24 H 1.08996 * 109.46871 * 299.99813 * 1 2 3 25 25 H 1.08998 * 109.47328 * 60.00250 * 1 2 3 26 26 H 1.09009 * 109.46461 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.46781 * 180.02562 * 3 2 1 28 28 H 1.08998 * 109.47000 * 299.99950 * 3 2 1 29 29 H 1.09004 * 109.47249 * 60.00127 * 3 2 1 30 30 H 0.96708 * 113.99593 * 179.97438 * 4 2 1 31 31 H 1.08999 * 109.46806 * 300.00170 * 5 2 1 32 32 H 1.09005 * 109.47011 * 180.02562 * 5 2 1 33 33 H 1.09004 * 109.47250 * 59.99698 * 6 5 2 34 34 H 1.09005 * 109.47069 * 299.99874 * 6 5 2 35 35 H 0.96994 * 119.99831 * 359.97438 * 7 6 5 36 36 H 1.08005 * 119.95480 * 359.97438 * 11 10 8 37 37 H 1.07993 * 119.66771 * 179.71616 * 12 11 10 38 38 H 1.08002 * 119.71786 * 180.02562 * 13 12 11 39 39 H 1.07995 * 120.05544 * 180.02562 * 14 13 12 40 40 H 0.97003 * 120.00596 * 354.83519 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 8 2.0063 -0.6736 -1.1668 5 6 2.0401 -0.7212 1.2493 6 6 1.5302 -2.1637 1.2493 7 7 2.0190 -2.8544 2.4451 8 6 1.6932 -4.1447 2.6585 9 8 0.9937 -4.7356 1.8582 10 6 2.1847 -4.8397 3.8623 11 6 3.0416 -4.1906 4.7471 12 6 3.5047 -4.8478 5.8715 13 6 3.1194 -6.1549 6.1367 14 6 2.2691 -6.8206 5.2839 15 6 1.7842 -6.1746 4.1319 16 6 0.9136 -6.8475 3.2520 17 1 0.1378 -6.3006 2.7368 18 6 1.0543 -8.2278 3.0453 19 7 2.1782 -8.8218 3.3458 20 14 -0.3654 -9.2162 2.3404 21 1 -1.2158 -9.7204 3.4485 22 1 -1.1770 -8.3498 1.4484 23 1 0.1681 -10.3642 1.5641 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3632 -1.0278 0.0005 27 1 3.1299 1.4426 -0.0005 28 1 1.6766 1.9563 -0.8900 29 1 1.6766 1.9564 0.8900 30 1 2.9704 -0.7114 -1.2331 31 1 1.6767 -0.2073 2.1392 32 1 3.1301 -0.7208 1.2494 33 1 1.8936 -2.6775 0.3593 34 1 0.4401 -2.1638 1.2493 35 1 2.5772 -2.3832 3.0832 36 1 3.3489 -3.1737 4.5521 37 1 4.1727 -4.3393 6.5507 38 1 3.4903 -6.6536 7.0200 39 1 1.9744 -7.8372 5.4985 40 1 2.9398 -8.2985 3.6408 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601465596.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:31:28 Heat of formation + Delta-G solvation = -88.648418 kcal Electronic energy + Delta-G solvation = -21319.411618 eV Core-core repulsion = 18097.949192 eV Total energy + Delta-G solvation = -3221.462425 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.24789 -38.49169 -36.92052 -34.48597 -33.83749 -32.58946 -30.33398 -29.46573 -28.54890 -27.56193 -25.26043 -23.50628 -21.93173 -20.86080 -20.45279 -19.42495 -18.07540 -16.80219 -16.05483 -15.64358 -15.61003 -14.72701 -14.56407 -14.37548 -14.08208 -13.81614 -13.61198 -13.14882 -12.96995 -12.53248 -12.41416 -12.26186 -12.13898 -11.93786 -11.80635 -11.57107 -11.19753 -11.08745 -10.87422 -10.74944 -10.72078 -10.35564 -10.14869 -10.11818 -9.59002 -9.06355 -8.47895 -8.34185 -7.78309 -7.59894 -7.13073 -4.44969 2.25344 2.73959 3.21552 3.32455 3.43792 3.83194 4.05929 4.09611 4.12889 4.59932 4.65534 4.67126 4.85841 5.14795 5.22918 5.40550 5.47197 5.52405 5.58934 5.71795 5.76719 5.85248 5.92112 5.92929 6.03303 6.14175 6.25511 6.29153 6.53754 6.72181 6.99692 7.14627 7.28814 7.49819 7.53943 7.62220 7.72627 7.90100 8.10700 8.22926 8.39905 8.74586 8.87726 9.39361 10.05620 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.018587 B = 0.004598 C = 0.003837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1506.051527 B = 6088.053481 C = 7295.282334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.130 3.870 3 C -0.177 4.177 4 O -0.557 6.557 5 C -0.157 4.157 6 C 0.128 3.872 7 N -0.751 5.751 8 C 0.562 3.438 9 O -0.536 6.536 10 C -0.265 4.265 11 C -0.044 4.044 12 C -0.260 4.260 13 C -0.076 4.076 14 C -0.201 4.201 15 C 0.121 3.879 16 C -0.466 4.466 17 H 0.106 0.894 18 C 0.031 3.969 19 N -0.794 5.794 20 Si 1.073 2.927 21 H -0.275 1.275 22 H -0.272 1.272 23 H -0.276 1.276 24 H 0.069 0.931 25 H 0.061 0.939 26 H 0.071 0.929 27 H 0.057 0.943 28 H 0.063 0.937 29 H 0.065 0.935 30 H 0.375 0.625 31 H 0.076 0.924 32 H 0.069 0.931 33 H 0.066 0.934 34 H 0.062 0.938 35 H 0.389 0.611 36 H 0.090 0.910 37 H 0.092 0.908 38 H 0.093 0.907 39 H 0.107 0.893 40 H 0.298 0.702 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.746 14.767 -2.951 15.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.089 3.911 3 C -0.234 4.234 4 O -0.363 6.363 5 C -0.195 4.195 6 C 0.004 3.996 7 N -0.406 5.406 8 C 0.356 3.644 9 O -0.414 6.414 10 C -0.270 4.270 11 C -0.063 4.063 12 C -0.280 4.280 13 C -0.095 4.095 14 C -0.220 4.220 15 C 0.116 3.884 16 C -0.493 4.493 17 H 0.124 0.876 18 C -0.190 4.190 19 N -0.418 5.418 20 Si 0.896 3.104 21 H -0.201 1.201 22 H -0.197 1.197 23 H -0.201 1.201 24 H 0.088 0.912 25 H 0.080 0.920 26 H 0.090 0.910 27 H 0.076 0.924 28 H 0.082 0.918 29 H 0.084 0.916 30 H 0.222 0.778 31 H 0.094 0.906 32 H 0.088 0.912 33 H 0.084 0.916 34 H 0.080 0.920 35 H 0.223 0.777 36 H 0.108 0.892 37 H 0.111 0.889 38 H 0.111 0.889 39 H 0.125 0.875 40 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -0.851 12.700 -4.065 13.362 hybrid contribution 1.678 2.033 1.063 2.843 sum 0.827 14.733 -3.002 15.059 Atomic orbital electron populations 1.21839 0.92582 1.03575 1.02198 1.21123 0.95179 0.90301 0.84460 1.22490 1.01406 0.96755 1.02788 1.86594 1.26589 1.79472 1.43628 1.22492 1.01401 0.96570 0.99026 1.21112 0.99092 0.90457 0.88975 1.46042 1.56199 1.13036 1.25346 1.18375 0.79742 0.80102 0.86215 1.90683 1.38203 1.65120 1.47425 1.19422 1.10282 0.98911 0.98424 1.20709 0.95096 0.96577 0.93900 1.20233 1.09898 0.96533 1.01318 1.20741 0.96673 0.94457 0.97608 1.21255 1.04101 1.00516 0.96155 1.17509 0.89165 0.90368 0.91362 1.21222 1.12946 0.94865 1.20293 0.87644 1.27272 1.01467 0.96150 0.94152 1.70361 1.02370 1.41973 1.27048 0.83522 0.74026 0.75577 0.77268 1.20057 1.19716 1.20139 0.91185 0.91994 0.91038 0.92355 0.91757 0.91556 0.77788 0.90578 0.91237 0.91605 0.91992 0.77688 0.89188 0.88935 0.88894 0.87535 0.88803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.50 8.49 37.16 0.32 -1.18 16 2 C 0.13 1.30 1.09 -90.62 -0.10 1.20 16 3 C -0.18 -1.36 8.81 37.16 0.33 -1.04 16 4 O -0.56 -6.29 12.31 -35.23 -0.43 -6.73 16 5 C -0.16 -1.68 4.57 -26.73 -0.12 -1.80 16 6 C 0.13 1.98 5.18 -4.05 -0.02 1.96 16 7 N -0.75 -13.49 5.51 -61.38 -0.34 -13.83 16 8 C 0.56 13.31 7.73 -12.52 -0.10 13.21 16 9 O -0.54 -14.59 13.56 5.27 0.07 -14.51 16 10 C -0.27 -6.54 5.92 -104.36 -0.62 -7.16 16 11 C -0.04 -0.93 9.53 -39.22 -0.37 -1.30 16 12 C -0.26 -5.47 10.03 -39.37 -0.39 -5.87 16 13 C -0.08 -1.69 10.01 -39.59 -0.40 -2.08 16 14 C -0.20 -5.06 7.87 -38.88 -0.31 -5.36 16 15 C 0.12 3.24 5.17 -106.54 -0.55 2.69 16 16 C -0.47 -13.02 7.65 -37.81 -0.29 -13.31 16 17 H 0.11 3.09 5.92 -52.49 -0.31 2.78 16 18 C 0.03 0.82 5.04 -17.30 -0.09 0.73 16 19 N -0.79 -21.51 12.57 55.56 0.70 -20.81 16 20 Si 1.07 22.91 29.98 -169.99 -5.10 17.82 16 21 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 22 H -0.27 -5.76 7.11 56.52 0.40 -5.35 16 23 H -0.28 -5.77 7.11 56.52 0.40 -5.37 16 24 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 25 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.07 0.87 6.43 -51.92 -0.33 0.53 16 27 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 28 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.37 2.96 9.05 45.56 0.41 3.38 16 31 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 32 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.07 1.14 7.68 -51.93 -0.40 0.74 16 34 H 0.06 1.03 6.43 -51.93 -0.33 0.69 16 35 H 0.39 5.94 6.51 -40.82 -0.27 5.68 16 36 H 0.09 1.56 6.41 -52.48 -0.34 1.23 16 37 H 0.09 1.68 8.06 -52.49 -0.42 1.25 16 38 H 0.09 1.80 8.06 -52.49 -0.42 1.38 16 39 H 0.11 2.73 6.94 -52.49 -0.36 2.36 16 40 H 0.30 8.26 6.55 -40.82 -0.27 7.99 16 LS Contribution 327.37 15.07 4.93 4.93 Total: -1.00 -31.58 327.37 -7.68 -39.26 By element: Atomic # 1 Polarization: 17.98 SS G_CDS: -4.80 Total: 13.18 kcal Atomic # 6 Polarization: -16.59 SS G_CDS: -2.71 Total: -19.31 kcal Atomic # 7 Polarization: -35.00 SS G_CDS: 0.36 Total: -34.64 kcal Atomic # 8 Polarization: -20.88 SS G_CDS: -0.36 Total: -21.24 kcal Atomic # 14 Polarization: 22.91 SS G_CDS: -5.10 Total: 17.82 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -31.58 -7.68 -39.26 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601465596.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.390 kcal (2) G-P(sol) polarization free energy of solvation -31.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.676 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.258 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds