Wall clock time and date at job start Mon Mar 30 2020 01:31:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53005 * 109.46751 * 2 1 4 4 O 1.42899 * 109.47016 * 240.00356 * 2 1 3 5 5 C 1.52999 * 109.47248 * 119.99791 * 2 1 3 6 6 C 1.52995 * 109.47191 * 60.00480 * 5 2 1 7 7 N 1.46494 * 109.47394 * 179.97438 * 6 5 2 8 8 C 1.34776 * 120.00009 * 179.97438 * 7 6 5 9 9 O 1.21609 * 120.00181 * 0.02562 * 8 7 6 10 10 C 1.47435 * 119.99851 * 180.02562 * 8 7 6 11 11 C 1.39227 * 120.28510 * 356.68670 * 10 8 7 12 12 C 1.38223 * 120.09723 * 180.28291 * 11 10 8 13 13 C 1.38826 * 120.67197 * 359.69417 * 12 11 10 14 14 C 1.37607 * 120.57000 * 0.02562 * 13 12 11 15 15 C 1.40702 * 119.88222 * 0.02562 * 14 13 12 16 16 C 1.40891 * 120.32820 * 179.97438 * 15 14 13 17 17 H 1.07998 * 119.99743 * 145.79457 * 16 15 14 18 18 C 1.40273 * 119.99861 * 325.79822 * 16 15 14 19 19 N 1.30629 * 119.99711 * 340.74144 * 18 16 15 20 20 Si 1.86800 * 120.00012 * 160.74702 * 18 16 15 21 21 H 1.48505 * 109.46791 * 269.99431 * 20 18 16 22 22 H 1.48496 * 109.47300 * 29.99461 * 20 18 16 23 23 H 1.48496 * 109.47010 * 149.99877 * 20 18 16 24 24 H 1.08996 * 109.46871 * 299.99813 * 1 2 3 25 25 H 1.08998 * 109.47328 * 60.00250 * 1 2 3 26 26 H 1.09009 * 109.46461 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.46781 * 180.02562 * 3 2 1 28 28 H 1.08998 * 109.47000 * 299.99950 * 3 2 1 29 29 H 1.09004 * 109.47249 * 60.00127 * 3 2 1 30 30 H 0.96708 * 113.99593 * 179.97438 * 4 2 1 31 31 H 1.08999 * 109.46806 * 300.00170 * 5 2 1 32 32 H 1.09005 * 109.47011 * 180.02562 * 5 2 1 33 33 H 1.09004 * 109.47250 * 59.99698 * 6 5 2 34 34 H 1.09005 * 109.47069 * 299.99874 * 6 5 2 35 35 H 0.96994 * 119.99831 * 359.97438 * 7 6 5 36 36 H 1.08005 * 119.95480 * 359.97438 * 11 10 8 37 37 H 1.07993 * 119.66771 * 179.71616 * 12 11 10 38 38 H 1.08002 * 119.71786 * 180.02562 * 13 12 11 39 39 H 1.07995 * 120.05544 * 180.02562 * 14 13 12 40 40 H 0.97003 * 120.00596 * 354.83519 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 8 2.0063 -0.6736 -1.1668 5 6 2.0401 -0.7212 1.2493 6 6 1.5302 -2.1637 1.2493 7 7 2.0190 -2.8544 2.4451 8 6 1.6932 -4.1447 2.6585 9 8 0.9937 -4.7356 1.8582 10 6 2.1847 -4.8397 3.8623 11 6 3.0416 -4.1906 4.7471 12 6 3.5047 -4.8478 5.8715 13 6 3.1194 -6.1549 6.1367 14 6 2.2691 -6.8206 5.2839 15 6 1.7842 -6.1746 4.1319 16 6 0.9136 -6.8475 3.2520 17 1 0.1378 -6.3006 2.7368 18 6 1.0543 -8.2278 3.0453 19 7 2.1782 -8.8218 3.3458 20 14 -0.3654 -9.2162 2.3404 21 1 -1.2158 -9.7204 3.4485 22 1 -1.1770 -8.3498 1.4484 23 1 0.1681 -10.3642 1.5641 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3632 -1.0278 0.0005 27 1 3.1299 1.4426 -0.0005 28 1 1.6766 1.9563 -0.8900 29 1 1.6766 1.9564 0.8900 30 1 2.9704 -0.7114 -1.2331 31 1 1.6767 -0.2073 2.1392 32 1 3.1301 -0.7208 1.2494 33 1 1.8936 -2.6775 0.3593 34 1 0.4401 -2.1638 1.2493 35 1 2.5772 -2.3832 3.0832 36 1 3.3489 -3.1737 4.5521 37 1 4.1727 -4.3393 6.5507 38 1 3.4903 -6.6536 7.0200 39 1 1.9744 -7.8372 5.4985 40 1 2.9398 -8.2985 3.6408 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601465596.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:31:28 Heat of formation + Delta-G solvation = -111.205109 kcal Electronic energy + Delta-G solvation = -21320.389749 eV Core-core repulsion = 18097.949192 eV Total energy + Delta-G solvation = -3222.440557 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.87670 -39.59495 -38.68087 -36.13292 -35.55347 -33.63723 -32.01685 -31.28825 -29.83094 -28.29744 -27.13239 -24.91887 -23.53899 -22.66773 -21.51864 -20.95622 -19.95381 -18.25748 -17.23056 -17.04983 -16.66143 -16.51393 -16.00545 -15.82931 -15.68196 -15.39701 -15.09460 -14.63200 -14.34670 -14.02830 -13.74132 -13.61555 -13.20313 -13.01013 -12.92156 -12.73307 -12.70335 -12.49994 -12.46880 -12.22199 -12.07263 -11.95240 -11.56852 -11.47108 -10.97566 -10.92116 -10.34359 -9.99977 -9.61197 -9.50174 -9.11069 -6.47423 0.39373 0.89908 1.44756 1.60929 1.75904 2.24674 2.29853 2.40330 2.73287 3.34223 3.55361 3.76565 3.85514 4.00609 4.18163 4.24661 4.28418 4.37111 4.45367 4.60138 4.73154 4.78133 4.86372 4.87386 4.89235 5.00784 5.02665 5.12953 5.15141 5.29215 5.36573 5.42419 5.58814 5.65202 5.70886 5.89099 5.96154 6.20013 6.33302 6.68968 6.85015 6.88831 6.92580 7.60915 8.03454 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.018587 B = 0.004598 C = 0.003837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1506.051527 B = 6088.053481 C = 7295.282334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.128 3.872 3 C -0.169 4.169 4 O -0.580 6.580 5 C -0.143 4.143 6 C 0.128 3.872 7 N -0.727 5.727 8 C 0.554 3.446 9 O -0.582 6.582 10 C -0.285 4.285 11 C -0.041 4.041 12 C -0.243 4.243 13 C -0.072 4.072 14 C -0.226 4.226 15 C 0.096 3.904 16 C -0.513 4.513 17 H 0.078 0.922 18 C -0.002 4.002 19 N -0.817 5.817 20 Si 1.117 2.883 21 H -0.253 1.253 22 H -0.277 1.277 23 H -0.266 1.266 24 H 0.087 0.913 25 H 0.064 0.936 26 H 0.043 0.957 27 H 0.071 0.929 28 H 0.063 0.937 29 H 0.079 0.921 30 H 0.388 0.612 31 H 0.095 0.905 32 H 0.089 0.911 33 H 0.043 0.957 34 H 0.046 0.954 35 H 0.407 0.593 36 H 0.138 0.862 37 H 0.139 0.861 38 H 0.125 0.875 39 H 0.089 0.911 40 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.350 17.655 -1.512 17.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.088 3.912 3 C -0.226 4.226 4 O -0.389 6.389 5 C -0.181 4.181 6 C 0.004 3.996 7 N -0.382 5.382 8 C 0.347 3.653 9 O -0.464 6.464 10 C -0.290 4.290 11 C -0.060 4.060 12 C -0.262 4.262 13 C -0.090 4.090 14 C -0.245 4.245 15 C 0.092 3.908 16 C -0.541 4.541 17 H 0.096 0.904 18 C -0.218 4.218 19 N -0.442 5.442 20 Si 0.935 3.065 21 H -0.178 1.178 22 H -0.202 1.202 23 H -0.191 1.191 24 H 0.106 0.894 25 H 0.083 0.917 26 H 0.062 0.938 27 H 0.090 0.910 28 H 0.082 0.918 29 H 0.097 0.903 30 H 0.237 0.763 31 H 0.113 0.887 32 H 0.107 0.893 33 H 0.061 0.939 34 H 0.065 0.935 35 H 0.244 0.756 36 H 0.155 0.845 37 H 0.156 0.844 38 H 0.143 0.857 39 H 0.107 0.893 40 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 0.797 15.647 -2.595 15.880 hybrid contribution 1.311 1.395 0.714 2.043 sum 2.107 17.042 -1.881 17.274 Atomic orbital electron populations 1.21900 0.93396 1.02050 1.03290 1.21211 0.94723 0.91694 0.83601 1.22405 1.02226 0.94559 1.03443 1.86573 1.28035 1.79952 1.44303 1.22449 1.02491 0.92847 1.00349 1.21215 0.98313 0.93149 0.86890 1.45786 1.55064 1.11194 1.26131 1.18508 0.79401 0.81702 0.85719 1.90666 1.40261 1.66731 1.48762 1.19834 1.10896 0.98625 0.99620 1.21164 0.93340 0.98558 0.92903 1.20829 1.08497 0.95721 1.01131 1.21175 0.94976 0.95178 0.97694 1.21211 1.06164 1.00331 0.96843 1.17906 0.89362 0.91863 0.91702 1.21125 1.14491 0.95872 1.22605 0.90411 1.28453 1.02858 0.96841 0.93601 1.70470 1.02366 1.41348 1.29972 0.82996 0.71721 0.74493 0.77323 1.17779 1.20217 1.19072 0.89430 0.91666 0.93821 0.91007 0.91785 0.90252 0.76253 0.88657 0.89263 0.93881 0.93546 0.75619 0.84486 0.84353 0.85675 0.89283 0.90500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.94 8.49 71.98 0.61 -2.33 16 2 C 0.13 2.30 1.09 -10.79 -0.01 2.29 16 3 C -0.17 -2.02 8.81 71.98 0.63 -1.39 16 4 O -0.58 -12.49 12.31 -148.98 -1.83 -14.32 16 5 C -0.14 -2.67 4.57 30.59 0.14 -2.53 16 6 C 0.13 3.90 5.18 86.38 0.45 4.35 16 7 N -0.73 -25.14 5.51 -466.37 -2.57 -27.71 16 8 C 0.55 26.63 7.73 86.67 0.67 27.30 16 9 O -0.58 -33.45 13.56 -4.06 -0.06 -33.50 16 10 C -0.28 -14.00 5.92 -19.70 -0.12 -14.12 16 11 C -0.04 -1.60 9.53 22.50 0.21 -1.38 16 12 C -0.24 -9.09 10.03 22.41 0.22 -8.87 16 13 C -0.07 -3.02 10.01 22.26 0.22 -2.79 16 14 C -0.23 -11.56 7.87 22.72 0.18 -11.38 16 15 C 0.10 5.33 5.17 -21.11 -0.11 5.22 16 16 C -0.51 -30.47 7.65 23.41 0.18 -30.29 16 17 H 0.08 4.93 5.92 -2.91 -0.02 4.92 16 18 C 0.00 -0.13 5.04 85.37 0.43 0.30 16 19 N -0.82 -46.51 12.57 21.88 0.28 -46.23 16 20 Si 1.12 48.47 29.98 68.60 2.06 50.53 16 21 H -0.25 -10.00 7.11 99.48 0.71 -9.29 16 22 H -0.28 -12.03 7.11 99.48 0.71 -11.32 16 23 H -0.27 -10.98 7.11 99.48 0.71 -10.27 16 24 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 25 H 0.06 1.21 8.14 -2.39 -0.02 1.20 16 26 H 0.04 1.09 6.43 -2.38 -0.02 1.07 16 27 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 28 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 29 H 0.08 0.77 8.14 -2.38 -0.02 0.75 16 30 H 0.39 5.53 9.05 -74.05 -0.67 4.86 16 31 H 0.09 1.46 8.14 -2.39 -0.02 1.45 16 32 H 0.09 1.36 8.14 -2.38 -0.02 1.34 16 33 H 0.04 1.52 7.68 -2.38 -0.02 1.50 16 34 H 0.05 1.58 6.43 -2.38 -0.02 1.56 16 35 H 0.41 10.96 6.51 -92.71 -0.60 10.36 16 36 H 0.14 3.97 6.41 -2.91 -0.02 3.95 16 37 H 0.14 4.02 8.06 -2.91 -0.02 4.00 16 38 H 0.13 4.41 8.06 -2.91 -0.02 4.39 16 39 H 0.09 4.77 6.94 -2.91 -0.02 4.75 16 40 H 0.28 16.54 6.55 -92.71 -0.61 15.93 16 Total: -1.00 -74.47 327.37 1.54 -72.93 By element: Atomic # 1 Polarization: 34.00 SS G_CDS: -0.05 Total: 33.95 kcal Atomic # 6 Polarization: -39.35 SS G_CDS: 3.72 Total: -35.64 kcal Atomic # 7 Polarization: -71.65 SS G_CDS: -2.29 Total: -73.94 kcal Atomic # 8 Polarization: -45.94 SS G_CDS: -1.89 Total: -47.82 kcal Atomic # 14 Polarization: 48.47 SS G_CDS: 2.06 Total: 50.53 kcal Total: -74.47 1.54 -72.93 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601465596.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.273 kcal (2) G-P(sol) polarization free energy of solvation -74.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.932 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds