Wall clock time and date at job start Mon Mar 30 2020 01:56:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53004 * 109.47268 * 2 1 4 4 C 1.53001 * 109.47367 * 239.99852 * 2 1 3 5 5 O 1.42892 * 109.47042 * 59.99470 * 4 2 1 6 6 C 1.53006 * 109.47328 * 119.99375 * 2 1 3 7 7 N 1.46494 * 109.47115 * 300.00233 * 6 2 1 8 8 C 1.34781 * 119.99667 * 179.97438 * 7 6 2 9 9 O 1.21542 * 120.00415 * 359.97438 * 8 7 6 10 10 C 1.47886 * 119.99598 * 180.02562 * 8 7 6 11 11 C 1.39915 * 120.03143 * 359.97438 * 10 8 7 12 12 C 1.38325 * 120.36223 * 180.02562 * 11 10 8 13 13 C 1.37745 * 120.41285 * 0.02562 * 12 11 10 14 14 C 1.40745 * 120.04067 * 359.97438 * 13 12 11 15 15 C 1.41439 * 120.18018 * 180.02562 * 14 13 12 16 16 H 1.07995 * 119.99853 * 24.38666 * 15 14 13 17 17 C 1.39937 * 120.00015 * 204.38540 * 15 14 13 18 18 N 1.30828 * 120.00202 * 17.84583 * 17 15 14 19 19 Si 1.86804 * 120.00094 * 197.84043 * 17 15 14 20 20 H 1.48505 * 109.46643 * 60.00420 * 19 17 15 21 21 H 1.48494 * 109.47065 * 180.02562 * 19 17 15 22 22 H 1.48495 * 109.47088 * 300.00333 * 19 17 15 23 23 C 1.38995 * 120.02525 * 180.02562 * 10 8 7 24 24 H 1.09003 * 109.47342 * 299.99847 * 1 2 3 25 25 H 1.08998 * 109.47040 * 60.00293 * 1 2 3 26 26 H 1.09007 * 109.47226 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47388 * 180.02562 * 3 2 1 28 28 H 1.09000 * 109.46374 * 300.00039 * 3 2 1 29 29 H 1.08998 * 109.47128 * 59.99450 * 3 2 1 30 30 H 1.09002 * 109.47357 * 180.02562 * 4 2 1 31 31 H 1.09007 * 109.46474 * 299.99880 * 4 2 1 32 32 H 0.96698 * 114.00093 * 180.02562 * 5 4 2 33 33 H 1.09000 * 109.46956 * 179.97438 * 6 2 1 34 34 H 1.09007 * 109.46572 * 60.00394 * 6 2 1 35 35 H 0.96999 * 120.00641 * 359.97438 * 7 6 2 36 36 H 1.08009 * 119.81570 * 359.97438 * 11 10 8 37 37 H 1.08010 * 119.79275 * 180.02562 * 12 11 10 38 38 H 1.08002 * 119.98213 * 179.97438 * 13 12 11 39 39 H 0.96991 * 120.00411 * 180.02562 * 18 17 15 40 40 H 1.08005 * 120.20307 * 359.70165 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 8 1.5636 -0.0478 -2.4159 6 6 2.0400 -0.7211 1.2494 7 7 1.5517 -0.0305 2.4454 8 6 1.8769 -0.4912 3.6696 9 8 2.5750 -1.4799 3.7812 10 6 1.3835 0.2057 4.8770 11 6 0.5794 1.3436 4.7492 12 6 0.1146 2.0011 5.8740 13 6 0.4380 1.5440 7.1325 14 6 1.2456 0.4009 7.2809 15 6 1.5791 -0.0714 8.5717 16 1 0.9423 0.1603 9.4126 17 6 2.7341 -0.8389 8.7592 18 7 3.6771 -0.8340 7.8524 19 14 2.9295 -1.8703 10.3044 20 1 1.8248 -2.8597 10.3819 21 1 4.2313 -2.5835 10.2620 22 1 2.8879 -0.9873 11.4975 23 6 1.7190 -0.2685 6.1397 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 3.1300 1.4425 -0.0005 28 1 1.6766 1.9563 -0.8900 29 1 1.6766 1.9564 0.8899 30 1 3.1300 -0.7217 -1.2490 31 1 1.6766 -1.7490 -1.2491 32 1 1.8486 -0.4515 -3.2471 33 1 3.1300 -0.7215 1.2491 34 1 1.6767 -1.7489 1.2494 35 1 0.9943 0.7584 2.3564 36 1 0.3210 1.7111 3.7670 37 1 -0.5059 2.8785 5.7647 38 1 0.0715 2.0629 8.0059 39 1 4.4775 -1.3663 7.9822 40 1 2.3361 -1.1488 6.2432 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000610925825.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:21 Heat of formation + Delta-G solvation = -85.382971 kcal Electronic energy + Delta-G solvation = -21223.658674 eV Core-core repulsion = 18002.337849 eV Total energy + Delta-G solvation = -3221.320825 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.56657 -38.22050 -36.94763 -35.58732 -33.76205 -32.65900 -30.12422 -29.42431 -27.32834 -26.97419 -25.78030 -25.07812 -22.17657 -20.93525 -19.60198 -19.06071 -17.89133 -17.48914 -16.10008 -15.64625 -15.44891 -15.03358 -14.63024 -14.56754 -14.31718 -13.85144 -13.37895 -13.23596 -13.13820 -12.83046 -12.58106 -12.42786 -12.16422 -11.81623 -11.62253 -11.15990 -11.09839 -11.03195 -10.93517 -10.74768 -10.66855 -10.49672 -10.18750 -10.02454 -9.69036 -9.20467 -9.01777 -8.63053 -7.62240 -7.51650 -6.79603 -4.41006 2.22378 2.82833 3.07765 3.09478 3.17203 3.55039 3.88159 3.92648 4.19811 4.60558 4.64618 4.66166 4.86217 5.20673 5.31730 5.33243 5.59491 5.60890 5.64562 5.77898 5.79776 5.90234 5.98512 5.99272 6.10638 6.24750 6.26647 6.27997 6.72611 6.87246 6.99283 7.02734 7.21826 7.38204 7.38794 7.70761 7.76755 7.93307 8.10506 8.19919 8.50989 8.80586 8.84061 8.96942 10.15017 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.030102 B = 0.003810 C = 0.003494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 929.956131 B = 7346.880421 C = 8012.088985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.076 4.076 3 C -0.138 4.138 4 C 0.089 3.911 5 O -0.568 6.568 6 C 0.132 3.868 7 N -0.732 5.732 8 C 0.563 3.437 9 O -0.547 6.547 10 C -0.128 4.128 11 C -0.219 4.219 12 C -0.097 4.097 13 C -0.212 4.212 14 C 0.099 3.901 15 C -0.460 4.460 16 H 0.081 0.919 17 C 0.073 3.927 18 N -0.783 5.783 19 Si 0.911 3.089 20 H -0.263 1.263 21 H -0.277 1.277 22 H -0.265 1.265 23 C -0.092 4.092 24 H 0.057 0.943 25 H 0.065 0.935 26 H 0.054 0.946 27 H 0.055 0.945 28 H 0.064 0.936 29 H 0.057 0.943 30 H 0.048 0.952 31 H 0.048 0.952 32 H 0.378 0.622 33 H 0.064 0.936 34 H 0.064 0.936 35 H 0.399 0.601 36 H 0.088 0.912 37 H 0.093 0.907 38 H 0.096 0.904 39 H 0.285 0.715 40 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.697 0.946 -14.540 14.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.076 4.076 3 C -0.196 4.196 4 C 0.011 3.989 5 O -0.373 6.373 6 C 0.008 3.992 7 N -0.388 5.388 8 C 0.354 3.646 9 O -0.426 6.426 10 C -0.131 4.131 11 C -0.239 4.239 12 C -0.115 4.115 13 C -0.232 4.232 14 C 0.096 3.904 15 C -0.489 4.489 16 H 0.099 0.901 17 C -0.146 4.146 18 N -0.407 5.407 19 Si 0.735 3.265 20 H -0.187 1.187 21 H -0.202 1.202 22 H -0.190 1.190 23 C -0.112 4.112 24 H 0.076 0.924 25 H 0.084 0.916 26 H 0.073 0.927 27 H 0.074 0.926 28 H 0.083 0.917 29 H 0.076 0.924 30 H 0.067 0.933 31 H 0.066 0.934 32 H 0.224 0.776 33 H 0.083 0.917 34 H 0.082 0.918 35 H 0.236 0.764 36 H 0.106 0.894 37 H 0.111 0.889 38 H 0.114 0.886 39 H 0.096 0.904 40 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -2.205 0.521 -14.060 14.241 hybrid contribution 0.241 -0.409 0.173 0.505 sum -1.964 0.112 -13.887 14.026 Atomic orbital electron populations 1.21799 0.93461 1.02115 1.02177 1.20793 0.97132 0.96726 0.92979 1.21802 1.00987 0.94618 1.02174 1.22073 0.97299 0.94563 0.84988 1.86453 1.77562 1.57384 1.15942 1.21138 0.99004 0.95801 0.83289 1.45931 1.55121 1.32646 1.05068 1.18843 0.79043 0.83485 0.83221 1.90689 1.38249 1.26642 1.86975 1.19468 1.02933 0.98191 0.92494 1.20328 1.07018 1.00042 0.96485 1.20428 0.99619 0.98443 0.93052 1.21092 1.07773 0.98953 0.95425 1.17594 0.89968 0.89576 0.93218 1.19561 1.06639 1.28202 0.94529 0.90108 1.25967 0.94900 0.95434 0.98289 1.69782 1.05363 1.31617 1.33941 0.86321 0.78427 0.80289 0.81457 1.18720 1.20225 1.18980 1.21634 0.99997 1.00143 0.89459 0.92433 0.91646 0.92653 0.92620 0.91653 0.92421 0.93335 0.93362 0.77595 0.91726 0.91764 0.76394 0.89366 0.88913 0.88628 0.90382 0.84856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.51 8.16 37.15 0.30 -1.20 16 2 C -0.08 -0.84 0.61 -154.51 -0.09 -0.93 16 3 C -0.14 -1.53 8.16 37.16 0.30 -1.23 16 4 C 0.09 0.82 5.91 37.16 0.22 1.04 16 5 O -0.57 -4.98 12.31 -35.23 -0.43 -5.42 16 6 C 0.13 1.86 4.56 -4.04 -0.02 1.84 16 7 N -0.73 -12.27 4.91 -61.24 -0.30 -12.57 16 8 C 0.56 12.46 7.77 -12.31 -0.10 12.36 16 9 O -0.55 -13.85 16.33 5.33 0.09 -13.77 16 10 C -0.13 -3.04 5.87 -105.04 -0.62 -3.66 16 11 C -0.22 -4.63 9.55 -38.92 -0.37 -5.00 16 12 C -0.10 -2.08 10.01 -39.73 -0.40 -2.48 16 13 C -0.21 -5.07 9.78 -38.82 -0.38 -5.45 16 14 C 0.10 2.63 5.57 -106.87 -0.60 2.03 16 15 C -0.46 -12.14 9.05 -37.73 -0.34 -12.48 16 16 H 0.08 2.01 7.91 -52.49 -0.41 1.60 16 17 C 0.07 1.86 5.14 -17.34 -0.09 1.77 16 18 N -0.78 -20.82 10.95 55.55 0.61 -20.21 16 19 Si 0.91 18.83 29.60 -169.99 -5.03 13.80 16 20 H -0.26 -5.40 7.11 56.52 0.40 -4.99 16 21 H -0.28 -5.62 7.11 56.52 0.40 -5.22 16 22 H -0.27 -5.34 7.11 56.52 0.40 -4.94 16 23 C -0.09 -2.48 8.23 -38.44 -0.32 -2.79 16 24 H 0.06 0.64 6.86 -51.93 -0.36 0.29 16 25 H 0.06 0.70 7.68 -51.93 -0.40 0.30 16 26 H 0.05 0.59 8.14 -51.92 -0.42 0.17 16 27 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.06 0.70 7.68 -51.93 -0.40 0.30 16 29 H 0.06 0.66 6.86 -51.93 -0.36 0.30 16 30 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.05 0.41 8.14 -51.92 -0.42 -0.02 16 32 H 0.38 1.63 9.12 45.56 0.42 2.05 16 33 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 34 H 0.06 0.93 8.14 -51.92 -0.42 0.50 16 35 H 0.40 5.95 4.18 -40.82 -0.17 5.78 16 36 H 0.09 1.55 6.38 -52.48 -0.33 1.22 16 37 H 0.09 1.68 8.06 -52.48 -0.42 1.26 16 38 H 0.10 2.12 8.06 -52.49 -0.42 1.70 16 39 H 0.29 6.99 8.30 -40.82 -0.34 6.65 16 40 H 0.13 3.87 5.74 -52.48 -0.30 3.57 16 LS Contribution 329.47 15.07 4.97 4.97 Total: -1.00 -30.75 329.47 -7.43 -38.18 By element: Atomic # 1 Polarization: 16.05 SS G_CDS: -4.83 Total: 11.21 kcal Atomic # 6 Polarization: -13.70 SS G_CDS: -2.49 Total: -16.19 kcal Atomic # 7 Polarization: -33.09 SS G_CDS: 0.31 Total: -32.78 kcal Atomic # 8 Polarization: -18.84 SS G_CDS: -0.35 Total: -19.18 kcal Atomic # 14 Polarization: 18.83 SS G_CDS: -5.03 Total: 13.80 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -30.75 -7.43 -38.18 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610925825.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.203 kcal (2) G-P(sol) polarization free energy of solvation -30.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.180 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds