Wall clock time and date at job start Mon Mar 30 2020 01:56:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53004 * 109.47268 * 2 1 4 4 C 1.53001 * 109.47367 * 239.99852 * 2 1 3 5 5 O 1.42892 * 109.47042 * 59.99470 * 4 2 1 6 6 C 1.53006 * 109.47328 * 119.99375 * 2 1 3 7 7 N 1.46494 * 109.47115 * 300.00233 * 6 2 1 8 8 C 1.34781 * 119.99667 * 179.97438 * 7 6 2 9 9 O 1.21542 * 120.00415 * 359.97438 * 8 7 6 10 10 C 1.47886 * 119.99598 * 180.02562 * 8 7 6 11 11 C 1.39915 * 120.03143 * 359.97438 * 10 8 7 12 12 C 1.38325 * 120.36223 * 180.02562 * 11 10 8 13 13 C 1.37745 * 120.41285 * 0.02562 * 12 11 10 14 14 C 1.40745 * 120.04067 * 359.97438 * 13 12 11 15 15 C 1.41439 * 120.18018 * 180.02562 * 14 13 12 16 16 H 1.07995 * 119.99853 * 24.38666 * 15 14 13 17 17 C 1.39937 * 120.00015 * 204.38540 * 15 14 13 18 18 N 1.30828 * 120.00202 * 17.84583 * 17 15 14 19 19 Si 1.86804 * 120.00094 * 197.84043 * 17 15 14 20 20 H 1.48505 * 109.46643 * 60.00420 * 19 17 15 21 21 H 1.48494 * 109.47065 * 180.02562 * 19 17 15 22 22 H 1.48495 * 109.47088 * 300.00333 * 19 17 15 23 23 C 1.38995 * 120.02525 * 180.02562 * 10 8 7 24 24 H 1.09003 * 109.47342 * 299.99847 * 1 2 3 25 25 H 1.08998 * 109.47040 * 60.00293 * 1 2 3 26 26 H 1.09007 * 109.47226 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47388 * 180.02562 * 3 2 1 28 28 H 1.09000 * 109.46374 * 300.00039 * 3 2 1 29 29 H 1.08998 * 109.47128 * 59.99450 * 3 2 1 30 30 H 1.09002 * 109.47357 * 180.02562 * 4 2 1 31 31 H 1.09007 * 109.46474 * 299.99880 * 4 2 1 32 32 H 0.96698 * 114.00093 * 180.02562 * 5 4 2 33 33 H 1.09000 * 109.46956 * 179.97438 * 6 2 1 34 34 H 1.09007 * 109.46572 * 60.00394 * 6 2 1 35 35 H 0.96999 * 120.00641 * 359.97438 * 7 6 2 36 36 H 1.08009 * 119.81570 * 359.97438 * 11 10 8 37 37 H 1.08010 * 119.79275 * 180.02562 * 12 11 10 38 38 H 1.08002 * 119.98213 * 179.97438 * 13 12 11 39 39 H 0.96991 * 120.00411 * 180.02562 * 18 17 15 40 40 H 1.08005 * 120.20307 * 359.70165 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 8 1.5636 -0.0478 -2.4159 6 6 2.0400 -0.7211 1.2494 7 7 1.5517 -0.0305 2.4454 8 6 1.8769 -0.4912 3.6696 9 8 2.5750 -1.4799 3.7812 10 6 1.3835 0.2057 4.8770 11 6 0.5794 1.3436 4.7492 12 6 0.1146 2.0011 5.8740 13 6 0.4380 1.5440 7.1325 14 6 1.2456 0.4009 7.2809 15 6 1.5791 -0.0714 8.5717 16 1 0.9423 0.1603 9.4126 17 6 2.7341 -0.8389 8.7592 18 7 3.6771 -0.8340 7.8524 19 14 2.9295 -1.8703 10.3044 20 1 1.8248 -2.8597 10.3819 21 1 4.2313 -2.5835 10.2620 22 1 2.8879 -0.9873 11.4975 23 6 1.7190 -0.2685 6.1397 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 3.1300 1.4425 -0.0005 28 1 1.6766 1.9563 -0.8900 29 1 1.6766 1.9564 0.8899 30 1 3.1300 -0.7217 -1.2490 31 1 1.6766 -1.7490 -1.2491 32 1 1.8486 -0.4515 -3.2471 33 1 3.1300 -0.7215 1.2491 34 1 1.6767 -1.7489 1.2494 35 1 0.9943 0.7584 2.3564 36 1 0.3210 1.7111 3.7670 37 1 -0.5059 2.8785 5.7647 38 1 0.0715 2.0629 8.0059 39 1 4.4775 -1.3663 7.9822 40 1 2.3361 -1.1488 6.2432 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000610925825.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:21 Heat of formation + Delta-G solvation = -106.502546 kcal Electronic energy + Delta-G solvation = -21224.574487 eV Core-core repulsion = 18002.337849 eV Total energy + Delta-G solvation = -3222.236639 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.09095 -39.41390 -38.62709 -36.60125 -35.61358 -34.04625 -31.91488 -31.27165 -28.19347 -28.02450 -27.25266 -26.55346 -23.84014 -22.78270 -21.25577 -20.15854 -19.42497 -18.45863 -17.74573 -17.21559 -16.68677 -16.49048 -16.36311 -15.76820 -15.47146 -15.34023 -14.87915 -14.55756 -14.48205 -14.29416 -14.22091 -13.51419 -13.45576 -13.11028 -12.94309 -12.80898 -12.73433 -12.52579 -12.21115 -11.96116 -11.92007 -11.86993 -11.52333 -11.50322 -11.06554 -10.84602 -10.81080 -10.15200 -9.47371 -9.38789 -8.66564 -6.38257 0.37794 1.01309 1.36457 1.48079 1.50989 2.09752 2.18995 2.20345 2.78673 3.34346 3.69432 3.72385 3.75336 3.99691 4.12352 4.35884 4.42324 4.45332 4.58399 4.59220 4.66393 4.77069 4.83798 4.90714 5.01211 5.02227 5.08341 5.12043 5.19238 5.31064 5.37740 5.38622 5.45133 5.52129 5.86067 5.92462 6.05158 6.28451 6.49891 6.67100 6.87685 6.94456 6.94603 7.29582 8.29991 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.030102 B = 0.003810 C = 0.003494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 929.956131 B = 7346.880421 C = 8012.088985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.070 4.070 3 C -0.137 4.137 4 C 0.092 3.908 5 O -0.580 6.580 6 C 0.130 3.870 7 N -0.708 5.708 8 C 0.560 3.440 9 O -0.589 6.589 10 C -0.139 4.139 11 C -0.199 4.199 12 C -0.095 4.095 13 C -0.218 4.218 14 C 0.068 3.932 15 C -0.498 4.498 16 H 0.084 0.916 17 C 0.029 3.971 18 N -0.824 5.824 19 Si 0.983 3.017 20 H -0.261 1.261 21 H -0.272 1.272 22 H -0.252 1.252 23 C -0.131 4.131 24 H 0.054 0.946 25 H 0.071 0.929 26 H 0.055 0.945 27 H 0.053 0.947 28 H 0.071 0.929 29 H 0.054 0.946 30 H 0.055 0.945 31 H 0.056 0.944 32 H 0.398 0.602 33 H 0.059 0.941 34 H 0.061 0.939 35 H 0.411 0.589 36 H 0.133 0.867 37 H 0.139 0.861 38 H 0.109 0.891 39 H 0.287 0.713 40 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.994 2.195 -16.070 16.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.070 4.070 3 C -0.194 4.194 4 C 0.014 3.986 5 O -0.388 6.388 6 C 0.006 3.994 7 N -0.362 5.362 8 C 0.350 3.650 9 O -0.471 6.471 10 C -0.142 4.142 11 C -0.219 4.219 12 C -0.112 4.112 13 C -0.238 4.238 14 C 0.065 3.935 15 C -0.527 4.527 16 H 0.103 0.897 17 C -0.186 4.186 18 N -0.450 5.450 19 Si 0.804 3.196 20 H -0.185 1.185 21 H -0.196 1.196 22 H -0.176 1.176 23 C -0.151 4.151 24 H 0.073 0.927 25 H 0.090 0.910 26 H 0.074 0.926 27 H 0.072 0.928 28 H 0.090 0.910 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.074 0.926 32 H 0.247 0.753 33 H 0.077 0.923 34 H 0.080 0.920 35 H 0.250 0.750 36 H 0.151 0.849 37 H 0.157 0.843 38 H 0.127 0.873 39 H 0.097 0.903 40 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -3.531 1.809 -15.648 16.143 hybrid contribution 0.548 -0.674 0.435 0.972 sum -2.983 1.135 -15.213 15.544 Atomic orbital electron populations 1.21787 0.93043 1.02216 1.02324 1.20726 0.97345 0.96610 0.92320 1.21793 1.00902 0.94438 1.02308 1.21966 0.97630 0.94570 0.84479 1.86389 1.77797 1.57864 1.16759 1.21313 0.98761 0.95950 0.83352 1.45723 1.53810 1.32418 1.04245 1.18728 0.78868 0.83046 0.84385 1.90665 1.40261 1.28485 1.87674 1.19778 1.03044 0.99128 0.92260 1.20821 1.04329 0.97994 0.98757 1.20915 0.99115 0.99381 0.91831 1.21406 1.06864 0.98115 0.97379 1.17942 0.91207 0.90885 0.93416 1.19853 1.07663 1.30327 0.94902 0.89744 1.26866 0.94103 0.96050 1.01541 1.69885 1.06023 1.32871 1.36200 0.85232 0.78377 0.78499 0.77516 1.18503 1.19649 1.17625 1.21441 1.02028 1.00373 0.91297 0.92690 0.91034 0.92629 0.92803 0.91001 0.92743 0.92701 0.92561 0.75255 0.92303 0.92025 0.75003 0.84909 0.84349 0.87314 0.90283 0.88309 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.61 8.16 71.98 0.59 -2.02 16 2 C -0.07 -1.38 0.61 -52.18 -0.03 -1.41 16 3 C -0.14 -2.69 8.16 71.98 0.59 -2.10 16 4 C 0.09 1.46 5.91 71.98 0.43 1.89 16 5 O -0.58 -8.47 12.31 -148.98 -1.83 -10.30 16 6 C 0.13 3.49 4.56 86.38 0.39 3.88 16 7 N -0.71 -22.69 4.91 -465.93 -2.29 -24.98 16 8 C 0.56 24.90 7.77 86.80 0.67 25.57 16 9 O -0.59 -30.92 16.33 -3.85 -0.06 -30.98 16 10 C -0.14 -6.64 5.87 -20.13 -0.12 -6.76 16 11 C -0.20 -7.90 9.55 22.70 0.22 -7.68 16 12 C -0.09 -3.76 10.01 22.17 0.22 -3.54 16 13 C -0.22 -10.23 9.78 22.77 0.22 -10.01 16 14 C 0.07 3.71 5.57 -21.32 -0.12 3.59 16 15 C -0.50 -27.30 9.05 23.47 0.21 -27.09 16 16 H 0.08 4.35 7.91 -2.91 -0.02 4.32 16 17 C 0.03 1.55 5.14 85.25 0.44 1.99 16 18 N -0.82 -46.31 10.95 21.82 0.24 -46.07 16 19 Si 0.98 39.81 29.60 68.60 2.03 41.84 16 20 H -0.26 -10.34 7.11 99.48 0.71 -9.63 16 21 H -0.27 -10.61 7.11 99.48 0.71 -9.90 16 22 H -0.25 -9.59 7.11 99.48 0.71 -8.89 16 23 C -0.13 -7.34 8.23 23.01 0.19 -7.15 16 24 H 0.05 1.06 6.86 -2.39 -0.02 1.04 16 25 H 0.07 1.31 7.68 -2.39 -0.02 1.29 16 26 H 0.05 1.06 8.14 -2.38 -0.02 1.04 16 27 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 28 H 0.07 1.34 7.68 -2.39 -0.02 1.32 16 29 H 0.05 1.08 6.86 -2.39 -0.02 1.06 16 30 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 31 H 0.06 0.81 8.14 -2.38 -0.02 0.79 16 32 H 0.40 2.26 9.12 -74.06 -0.68 1.59 16 33 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 34 H 0.06 1.72 8.14 -2.38 -0.02 1.70 16 35 H 0.41 11.06 4.18 -92.71 -0.39 10.67 16 36 H 0.13 4.03 6.38 -2.91 -0.02 4.01 16 37 H 0.14 4.28 8.06 -2.91 -0.02 4.25 16 38 H 0.11 4.70 8.06 -2.91 -0.02 4.68 16 39 H 0.29 14.87 8.30 -92.71 -0.77 14.10 16 40 H 0.10 6.17 5.74 -2.91 -0.02 6.15 16 Total: -1.00 -70.21 329.47 1.98 -68.23 By element: Atomic # 1 Polarization: 33.12 SS G_CDS: 0.00 Total: 33.12 kcal Atomic # 6 Polarization: -34.75 SS G_CDS: 3.90 Total: -30.85 kcal Atomic # 7 Polarization: -69.00 SS G_CDS: -2.05 Total: -71.05 kcal Atomic # 8 Polarization: -39.39 SS G_CDS: -1.90 Total: -41.29 kcal Atomic # 14 Polarization: 39.81 SS G_CDS: 2.03 Total: 41.84 kcal Total: -70.21 1.98 -68.23 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610925825.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.276 kcal (2) G-P(sol) polarization free energy of solvation -70.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.227 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds