Wall clock time and date at job start Mon Mar 30 2020 01:51:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53000 * 109.47425 * 2 1 4 4 C 1.52995 * 109.47425 * 180.02562 * 3 2 1 5 5 H 1.09005 * 109.47438 * 304.99971 * 4 3 2 6 6 O 1.42900 * 109.47321 * 64.99831 * 4 3 2 7 7 C 1.53001 * 109.47196 * 185.00202 * 4 3 2 8 8 C 1.50705 * 109.47146 * 175.00106 * 7 4 3 9 9 O 1.21276 * 119.99799 * 359.97438 * 8 7 4 10 10 N 1.34780 * 119.99785 * 179.97438 * 8 7 4 11 11 C 1.39240 * 119.99744 * 185.09599 * 10 8 7 12 12 C 1.39474 * 119.83195 * 214.17969 * 11 10 8 13 13 C 1.36383 * 120.16511 * 179.71882 * 12 11 10 14 14 C 1.40870 * 119.82567 * 0.55902 * 13 12 11 15 15 C 1.41156 * 120.15917 * 179.69697 * 14 13 12 16 16 H 1.08000 * 119.99832 * 205.37240 * 15 14 13 17 17 C 1.39905 * 120.00234 * 25.37088 * 15 14 13 18 18 N 1.30871 * 119.99845 * 16.82254 * 17 15 14 19 19 Si 1.86796 * 119.99903 * 196.82442 * 17 15 14 20 20 H 1.48502 * 109.47155 * 89.99787 * 19 17 15 21 21 H 1.48499 * 109.47306 * 209.99876 * 19 17 15 22 22 H 1.48501 * 109.47213 * 330.00160 * 19 17 15 23 23 C 1.40862 * 119.67647 * 359.71572 * 14 13 12 24 24 C 1.36373 * 119.82625 * 0.02562 * 23 14 13 25 25 H 1.09006 * 109.47085 * 299.99883 * 1 2 3 26 26 H 1.08997 * 109.47239 * 60.00342 * 1 2 3 27 27 H 1.09006 * 109.47046 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47250 * 239.99813 * 2 1 3 29 29 H 1.09002 * 109.47338 * 120.00127 * 2 1 3 30 30 H 1.09006 * 109.46894 * 60.00000 * 3 2 1 31 31 H 1.09002 * 109.46967 * 300.00354 * 3 2 1 32 32 H 0.96699 * 113.99691 * 60.00274 * 6 4 3 33 33 H 1.08999 * 109.47464 * 54.99610 * 7 4 3 34 34 H 1.08998 * 109.46688 * 294.99768 * 7 4 3 35 35 H 0.97000 * 119.99754 * 5.10436 * 10 8 7 36 36 H 1.08000 * 119.92132 * 0.02562 * 12 11 10 37 37 H 1.08002 * 120.08350 * 180.27182 * 13 12 11 38 38 H 0.97001 * 119.99928 * 179.97438 * 18 17 15 39 39 H 1.07992 * 120.09051 * 179.97438 * 23 14 13 40 40 H 1.07999 * 119.91718 * 179.97438 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 1 3.9337 0.8529 0.8409 6 8 4.0458 0.8732 -1.2219 7 6 4.0801 2.8795 0.1251 8 6 5.5821 2.8704 0.2480 9 8 6.1850 1.8183 0.2366 10 7 6.2551 4.0317 0.3705 11 6 7.6475 4.0319 0.3773 12 6 8.3374 4.9583 1.1591 13 6 9.7012 4.9608 1.1752 14 6 10.4129 4.0323 0.3905 15 6 11.8244 4.0329 0.3969 16 1 12.3685 3.6480 -0.4530 17 6 12.5187 4.5321 1.5042 18 7 11.9011 4.6897 2.6472 19 14 14.3273 4.9738 1.3511 20 1 14.4567 6.3954 0.9417 21 1 14.9985 4.7727 2.6604 22 1 14.9644 4.1046 0.3295 23 6 9.7091 3.1036 -0.4010 24 6 8.3454 3.1098 -0.4027 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.8933 -0.5138 -0.8899 29 1 1.8933 -0.5139 0.8900 30 1 1.6767 1.9563 0.8900 31 1 1.6766 1.9563 -0.8900 32 1 3.7602 1.3478 -2.0146 33 1 3.6458 3.3430 1.0109 34 1 3.7913 3.4462 -0.7600 35 1 5.7695 4.8672 0.4541 36 1 7.7904 5.6721 1.7570 37 1 10.2340 5.6759 1.7845 38 1 12.3826 5.0355 3.4150 39 1 10.2479 2.3892 -1.0054 40 1 7.8043 2.3987 -1.0093 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000611003494.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:02 Heat of formation + Delta-G solvation = -88.628896 kcal Electronic energy + Delta-G solvation = -20692.125159 eV Core-core repulsion = 17470.663580 eV Total energy + Delta-G solvation = -3221.461579 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.76737 -38.00440 -36.91340 -34.39968 -34.20716 -32.94414 -31.30214 -29.55011 -28.94329 -27.37417 -24.85043 -22.70159 -21.48667 -21.29140 -20.64575 -19.48498 -17.35878 -17.01163 -16.43840 -16.22457 -15.81831 -15.21641 -14.96698 -14.22059 -14.08283 -13.87401 -13.66710 -13.30810 -13.03206 -12.62436 -12.23427 -12.07576 -11.99123 -11.79021 -11.72018 -11.42569 -11.28181 -11.11742 -10.95238 -10.86935 -10.80596 -10.71505 -9.99874 -9.93778 -9.54898 -9.31029 -9.06112 -8.83783 -7.51782 -6.94778 -6.71735 -4.27771 2.60556 3.04130 3.08335 3.12039 3.12619 3.43469 3.72378 3.94601 4.38764 4.56004 4.65010 4.74492 4.81575 4.99211 5.08996 5.26791 5.31124 5.45938 5.48894 5.56844 5.68040 5.74080 5.84514 5.88109 6.12671 6.15204 6.21796 6.46867 6.81947 6.97480 7.07113 7.22700 7.32166 7.62196 7.71393 7.76618 7.93604 8.06022 8.30734 8.34757 8.62092 8.84686 8.90659 9.04234 10.20094 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.054686 B = 0.002897 C = 0.002843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 511.893473 B = 9664.174289 C = 9847.899946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.122 4.122 3 C -0.151 4.151 4 C 0.123 3.877 5 H 0.104 0.896 6 O -0.543 6.543 7 C -0.174 4.174 8 C 0.495 3.505 9 O -0.515 6.515 10 N -0.656 5.656 11 C -0.005 4.005 12 C -0.115 4.115 13 C -0.154 4.154 14 C 0.104 3.896 15 C -0.458 4.458 16 H 0.078 0.922 17 C 0.074 3.926 18 N -0.794 5.794 19 Si 0.910 3.090 20 H -0.268 1.268 21 H -0.278 1.278 22 H -0.262 1.262 23 C -0.215 4.215 24 C -0.076 4.076 25 H 0.052 0.948 26 H 0.052 0.948 27 H 0.053 0.947 28 H 0.069 0.931 29 H 0.062 0.938 30 H 0.070 0.930 31 H 0.064 0.936 32 H 0.365 0.635 33 H 0.096 0.904 34 H 0.091 0.909 35 H 0.392 0.608 36 H 0.089 0.911 37 H 0.121 0.879 38 H 0.280 0.720 39 H 0.095 0.905 40 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.525 -0.343 -3.215 17.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.160 4.160 3 C -0.189 4.189 4 C 0.063 3.937 5 H 0.122 0.878 6 O -0.347 6.347 7 C -0.215 4.215 8 C 0.281 3.719 9 O -0.390 6.390 10 N -0.300 5.300 11 C -0.097 4.097 12 C -0.136 4.136 13 C -0.174 4.174 14 C 0.102 3.898 15 C -0.487 4.487 16 H 0.096 0.904 17 C -0.144 4.144 18 N -0.420 5.420 19 Si 0.734 3.266 20 H -0.193 1.193 21 H -0.204 1.204 22 H -0.186 1.186 23 C -0.235 4.235 24 C -0.096 4.096 25 H 0.071 0.929 26 H 0.071 0.929 27 H 0.072 0.928 28 H 0.088 0.912 29 H 0.081 0.919 30 H 0.089 0.911 31 H 0.083 0.917 32 H 0.211 0.789 33 H 0.114 0.886 34 H 0.109 0.891 35 H 0.225 0.775 36 H 0.107 0.893 37 H 0.139 0.861 38 H 0.091 0.909 39 H 0.113 0.887 40 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -16.786 -1.489 -2.571 17.047 hybrid contribution 0.228 1.195 -0.102 1.221 sum -16.558 -0.294 -2.673 16.775 Atomic orbital electron populations 1.21789 0.96115 1.01534 1.01528 1.21459 0.95251 0.96403 1.02873 1.22363 0.96083 0.97868 1.02605 1.21676 0.91216 0.91833 0.88926 0.87786 1.86750 1.76912 1.56162 1.14844 1.22466 0.94306 1.00320 1.04401 1.20410 0.89205 0.84230 0.78063 1.90742 1.69650 1.30599 1.48045 1.43060 1.06063 1.08384 1.72494 1.17163 0.80394 1.05610 1.06563 1.20228 0.95050 0.99495 0.98779 1.20897 0.91759 1.00976 1.03718 1.17665 0.93406 0.88852 0.89910 1.19564 0.91559 1.35678 1.01946 0.90367 1.25928 1.00926 0.93082 0.94453 1.69848 1.38621 1.32926 1.00563 0.86287 0.81877 0.79831 0.78570 1.19309 1.20352 1.18609 1.20660 0.92970 1.02142 1.07732 1.20249 0.94129 0.97681 0.97522 0.92930 0.92925 0.92822 0.91227 0.91931 0.91091 0.91694 0.78945 0.88582 0.89076 0.77456 0.89275 0.86122 0.90905 0.88713 0.88043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.07 9.91 37.16 0.37 -0.71 16 2 C -0.12 -1.05 5.83 -26.73 -0.16 -1.20 16 3 C -0.15 -1.23 4.89 -26.73 -0.13 -1.36 16 4 C 0.12 1.41 2.51 -26.73 -0.07 1.34 16 5 H 0.10 1.43 7.95 -51.93 -0.41 1.02 16 6 O -0.54 -7.21 12.11 -49.64 -0.60 -7.81 16 7 C -0.17 -1.92 5.38 -27.88 -0.15 -2.07 16 8 C 0.49 8.57 7.43 -10.98 -0.08 8.49 16 9 O -0.52 -11.47 13.14 -8.85 -0.12 -11.59 16 10 N -0.66 -11.60 5.31 -9.74 -0.05 -11.65 16 11 C -0.01 -0.11 6.27 -83.57 -0.52 -0.64 16 12 C -0.12 -2.68 9.89 -39.79 -0.39 -3.08 16 13 C -0.15 -4.01 8.63 -39.25 -0.34 -4.35 16 14 C 0.10 2.85 5.57 -106.80 -0.59 2.26 16 15 C -0.46 -12.34 9.04 -37.85 -0.34 -12.68 16 16 H 0.08 2.03 7.90 -52.49 -0.41 1.61 16 17 C 0.07 1.87 5.15 -17.34 -0.09 1.78 16 18 N -0.79 -20.75 10.94 55.55 0.61 -20.14 16 19 Si 0.91 18.82 29.59 -169.99 -5.03 13.79 16 20 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16 21 H -0.28 -5.64 7.11 56.52 0.40 -5.24 16 22 H -0.26 -5.38 7.11 56.52 0.40 -4.98 16 23 C -0.21 -5.61 9.74 -39.26 -0.38 -5.99 16 24 C -0.08 -1.87 8.57 -39.79 -0.34 -2.22 16 25 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 26 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 27 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.07 0.66 7.82 -51.93 -0.41 0.25 16 29 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.36 3.36 9.05 45.56 0.41 3.77 16 33 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.09 0.79 8.14 -51.93 -0.42 0.36 16 35 H 0.39 5.35 8.81 -40.82 -0.36 4.99 16 36 H 0.09 1.80 8.06 -52.49 -0.42 1.38 16 37 H 0.12 3.21 6.18 -52.49 -0.32 2.89 16 38 H 0.28 6.64 8.30 -40.82 -0.34 6.30 16 39 H 0.09 2.35 8.06 -52.49 -0.42 1.93 16 40 H 0.10 2.49 6.47 -52.49 -0.34 2.15 16 LS Contribution 334.97 15.07 5.05 5.05 Total: -1.00 -32.35 334.97 -8.57 -40.92 By element: Atomic # 1 Polarization: 17.07 SS G_CDS: -5.21 Total: 11.86 kcal Atomic # 6 Polarization: -17.21 SS G_CDS: -3.22 Total: -20.43 kcal Atomic # 7 Polarization: -32.35 SS G_CDS: 0.56 Total: -31.79 kcal Atomic # 8 Polarization: -18.68 SS G_CDS: -0.72 Total: -19.40 kcal Atomic # 14 Polarization: 18.82 SS G_CDS: -5.03 Total: 13.79 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -32.35 -8.57 -40.92 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611003494.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.706 kcal (2) G-P(sol) polarization free energy of solvation -32.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.574 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.923 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds