Wall clock time and date at job start Mon Mar 30 2020 01:51:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53000 * 109.47425 * 2 1 4 4 C 1.52995 * 109.47425 * 180.02562 * 3 2 1 5 5 H 1.09005 * 109.47438 * 304.99971 * 4 3 2 6 6 O 1.42900 * 109.47321 * 64.99831 * 4 3 2 7 7 C 1.53001 * 109.47196 * 185.00202 * 4 3 2 8 8 C 1.50705 * 109.47146 * 175.00106 * 7 4 3 9 9 O 1.21276 * 119.99799 * 359.97438 * 8 7 4 10 10 N 1.34780 * 119.99785 * 179.97438 * 8 7 4 11 11 C 1.39240 * 119.99744 * 185.09599 * 10 8 7 12 12 C 1.39474 * 119.83195 * 214.17969 * 11 10 8 13 13 C 1.36383 * 120.16511 * 179.71882 * 12 11 10 14 14 C 1.40870 * 119.82567 * 0.55902 * 13 12 11 15 15 C 1.41156 * 120.15917 * 179.69697 * 14 13 12 16 16 H 1.08000 * 119.99832 * 205.37240 * 15 14 13 17 17 C 1.39905 * 120.00234 * 25.37088 * 15 14 13 18 18 N 1.30871 * 119.99845 * 16.82254 * 17 15 14 19 19 Si 1.86796 * 119.99903 * 196.82442 * 17 15 14 20 20 H 1.48502 * 109.47155 * 89.99787 * 19 17 15 21 21 H 1.48499 * 109.47306 * 209.99876 * 19 17 15 22 22 H 1.48501 * 109.47213 * 330.00160 * 19 17 15 23 23 C 1.40862 * 119.67647 * 359.71572 * 14 13 12 24 24 C 1.36373 * 119.82625 * 0.02562 * 23 14 13 25 25 H 1.09006 * 109.47085 * 299.99883 * 1 2 3 26 26 H 1.08997 * 109.47239 * 60.00342 * 1 2 3 27 27 H 1.09006 * 109.47046 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47250 * 239.99813 * 2 1 3 29 29 H 1.09002 * 109.47338 * 120.00127 * 2 1 3 30 30 H 1.09006 * 109.46894 * 60.00000 * 3 2 1 31 31 H 1.09002 * 109.46967 * 300.00354 * 3 2 1 32 32 H 0.96699 * 113.99691 * 60.00274 * 6 4 3 33 33 H 1.08999 * 109.47464 * 54.99610 * 7 4 3 34 34 H 1.08998 * 109.46688 * 294.99768 * 7 4 3 35 35 H 0.97000 * 119.99754 * 5.10436 * 10 8 7 36 36 H 1.08000 * 119.92132 * 0.02562 * 12 11 10 37 37 H 1.08002 * 120.08350 * 180.27182 * 13 12 11 38 38 H 0.97001 * 119.99928 * 179.97438 * 18 17 15 39 39 H 1.07992 * 120.09051 * 179.97438 * 23 14 13 40 40 H 1.07999 * 119.91718 * 179.97438 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 1 3.9337 0.8529 0.8409 6 8 4.0458 0.8732 -1.2219 7 6 4.0801 2.8795 0.1251 8 6 5.5821 2.8704 0.2480 9 8 6.1850 1.8183 0.2366 10 7 6.2551 4.0317 0.3705 11 6 7.6475 4.0319 0.3773 12 6 8.3374 4.9583 1.1591 13 6 9.7012 4.9608 1.1752 14 6 10.4129 4.0323 0.3905 15 6 11.8244 4.0329 0.3969 16 1 12.3685 3.6480 -0.4530 17 6 12.5187 4.5321 1.5042 18 7 11.9011 4.6897 2.6472 19 14 14.3273 4.9738 1.3511 20 1 14.4567 6.3954 0.9417 21 1 14.9985 4.7727 2.6604 22 1 14.9644 4.1046 0.3295 23 6 9.7091 3.1036 -0.4010 24 6 8.3454 3.1098 -0.4027 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.8933 -0.5138 -0.8899 29 1 1.8933 -0.5139 0.8900 30 1 1.6767 1.9563 0.8900 31 1 1.6766 1.9563 -0.8900 32 1 3.7602 1.3478 -2.0146 33 1 3.6458 3.3430 1.0109 34 1 3.7913 3.4462 -0.7600 35 1 5.7695 4.8672 0.4541 36 1 7.7904 5.6721 1.7570 37 1 10.2340 5.6759 1.7845 38 1 12.3826 5.0355 3.4150 39 1 10.2479 2.3892 -1.0054 40 1 7.8043 2.3987 -1.0093 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000611003494.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:01 Heat of formation + Delta-G solvation = -110.080802 kcal Electronic energy + Delta-G solvation = -20693.055383 eV Core-core repulsion = 17470.663580 eV Total energy + Delta-G solvation = -3222.391803 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.22362 -39.39282 -38.34769 -36.12396 -34.97433 -34.72080 -32.36006 -31.47364 -30.69381 -28.34016 -26.57535 -23.91176 -23.10937 -22.35961 -22.05789 -20.99418 -19.29131 -18.42894 -17.76607 -17.35186 -17.04567 -16.83141 -16.10026 -15.72422 -15.31273 -15.05561 -14.88891 -14.70160 -14.36122 -14.10091 -13.99543 -13.67953 -13.24293 -13.03082 -12.78987 -12.76042 -12.62212 -12.50082 -12.47086 -12.14047 -11.75485 -11.61887 -11.48772 -11.43619 -11.15041 -10.91895 -10.73300 -10.49726 -9.48444 -8.84615 -8.60375 -6.28485 0.81140 1.12304 1.38546 1.46246 1.52303 1.91080 2.21523 2.41030 2.74863 3.56090 3.70399 3.74563 3.82804 4.12484 4.23422 4.33474 4.37106 4.45106 4.51657 4.68169 4.71748 4.77210 4.92255 4.96941 5.04525 5.11406 5.13561 5.16623 5.29804 5.32705 5.42683 5.46099 5.50788 5.64930 5.90070 6.03122 6.11477 6.36927 6.64265 6.81542 6.92002 6.98564 6.99098 7.52412 8.32934 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.054686 B = 0.002897 C = 0.002843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 511.893473 B = 9664.174289 C = 9847.899946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.126 4.126 3 C -0.138 4.138 4 C 0.121 3.879 5 H 0.071 0.929 6 O -0.574 6.574 7 C -0.158 4.158 8 C 0.490 3.510 9 O -0.570 6.570 10 N -0.649 5.649 11 C 0.011 3.989 12 C -0.114 4.114 13 C -0.172 4.172 14 C 0.073 3.927 15 C -0.497 4.497 16 H 0.073 0.927 17 C 0.033 3.967 18 N -0.825 5.825 19 Si 0.986 3.014 20 H -0.258 1.258 21 H -0.267 1.267 22 H -0.261 1.261 23 C -0.235 4.235 24 C -0.088 4.088 25 H 0.059 0.941 26 H 0.061 0.939 27 H 0.052 0.948 28 H 0.055 0.945 29 H 0.048 0.952 30 H 0.088 0.912 31 H 0.086 0.914 32 H 0.381 0.619 33 H 0.131 0.869 34 H 0.129 0.871 35 H 0.417 0.583 36 H 0.125 0.875 37 H 0.111 0.889 38 H 0.289 0.711 39 H 0.091 0.909 40 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.618 1.287 -3.039 19.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.163 4.163 3 C -0.176 4.176 4 C 0.061 3.939 5 H 0.089 0.911 6 O -0.380 6.380 7 C -0.198 4.198 8 C 0.280 3.720 9 O -0.449 6.449 10 N -0.295 5.295 11 C -0.083 4.083 12 C -0.134 4.134 13 C -0.192 4.192 14 C 0.070 3.930 15 C -0.526 4.526 16 H 0.091 0.909 17 C -0.181 4.181 18 N -0.452 5.452 19 Si 0.807 3.193 20 H -0.183 1.183 21 H -0.192 1.192 22 H -0.185 1.185 23 C -0.256 4.256 24 C -0.108 4.108 25 H 0.079 0.921 26 H 0.080 0.920 27 H 0.071 0.929 28 H 0.073 0.927 29 H 0.067 0.933 30 H 0.107 0.893 31 H 0.105 0.895 32 H 0.229 0.771 33 H 0.149 0.851 34 H 0.147 0.853 35 H 0.254 0.746 36 H 0.143 0.857 37 H 0.129 0.871 38 H 0.100 0.900 39 H 0.109 0.891 40 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -18.942 0.172 -2.403 19.095 hybrid contribution 0.717 0.617 -0.171 0.961 sum -18.225 0.788 -2.574 18.423 Atomic orbital electron populations 1.21755 0.94648 1.01848 1.02326 1.21465 0.96501 0.96767 1.01587 1.22252 0.93108 0.97736 1.04480 1.21682 0.93399 0.91407 0.87378 0.91116 1.86710 1.77725 1.57383 1.16190 1.22493 0.88749 1.00814 1.07717 1.21604 0.91803 0.82887 0.75752 1.90733 1.71423 1.32598 1.50100 1.43036 1.03992 1.10151 1.72346 1.17242 0.83050 1.03659 1.04316 1.20515 0.94289 1.00014 0.98597 1.20929 0.93109 1.00998 1.04125 1.17988 0.94200 0.89792 0.91009 1.19780 0.91960 1.37987 1.02874 0.90855 1.26786 1.05692 0.92178 0.93479 1.69886 1.40739 1.33246 1.01288 0.85142 0.75636 0.79716 0.78814 1.18254 1.19194 1.18536 1.20785 0.93894 1.02493 1.08384 1.20335 0.93731 0.98436 0.98307 0.92146 0.92023 0.92884 0.92654 0.93267 0.89322 0.89501 0.77063 0.85062 0.85346 0.74589 0.85711 0.87107 0.90009 0.89064 0.88355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.75 9.91 71.98 0.71 -1.04 16 2 C -0.13 -1.97 5.83 30.59 0.18 -1.79 16 3 C -0.14 -1.80 4.89 30.59 0.15 -1.66 16 4 C 0.12 2.53 2.51 30.59 0.08 2.61 16 5 H 0.07 1.94 7.95 -2.38 -0.02 1.92 16 6 O -0.57 -14.72 12.11 -135.20 -1.64 -16.36 16 7 C -0.16 -2.88 5.38 29.85 0.16 -2.72 16 8 C 0.49 16.05 7.43 87.66 0.65 16.70 16 9 O -0.57 -25.49 13.14 10.76 0.14 -25.35 16 10 N -0.65 -21.35 5.31 -303.11 -1.61 -22.96 16 11 C 0.01 0.49 6.27 38.56 0.24 0.73 16 12 C -0.11 -5.21 9.89 22.13 0.22 -4.99 16 13 C -0.17 -9.13 8.63 22.48 0.19 -8.94 16 14 C 0.07 4.13 5.57 -21.28 -0.12 4.01 16 15 C -0.50 -27.83 9.04 23.39 0.21 -27.62 16 16 H 0.07 4.00 7.90 -2.91 -0.02 3.97 16 17 C 0.03 1.71 5.15 85.24 0.44 2.15 16 18 N -0.83 -43.86 10.94 21.82 0.24 -43.62 16 19 Si 0.99 38.90 29.59 68.60 2.03 40.93 16 20 H -0.26 -9.70 7.11 99.48 0.71 -9.00 16 21 H -0.27 -9.98 7.11 99.48 0.71 -9.28 16 22 H -0.26 -10.17 7.11 99.48 0.71 -9.46 16 23 C -0.24 -12.84 9.74 22.48 0.22 -12.62 16 24 C -0.09 -4.44 8.57 22.14 0.19 -4.25 16 25 H 0.06 0.62 8.14 -2.38 -0.02 0.61 16 26 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 27 H 0.05 0.63 8.14 -2.38 -0.02 0.61 16 28 H 0.05 1.01 7.82 -2.39 -0.02 0.99 16 29 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 30 H 0.09 0.89 8.14 -2.38 -0.02 0.87 16 31 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 32 H 0.38 6.33 9.05 -74.06 -0.67 5.66 16 33 H 0.13 1.58 8.14 -2.39 -0.02 1.56 16 34 H 0.13 1.50 8.14 -2.39 -0.02 1.48 16 35 H 0.42 9.69 8.81 -92.71 -0.82 8.88 16 36 H 0.13 4.72 8.06 -2.91 -0.02 4.70 16 37 H 0.11 6.04 6.18 -2.91 -0.02 6.02 16 38 H 0.29 13.78 8.30 -92.71 -0.77 13.01 16 39 H 0.09 4.83 8.06 -2.91 -0.02 4.81 16 40 H 0.10 4.97 6.47 -2.91 -0.02 4.95 16 Total: -1.00 -74.47 334.97 2.26 -72.22 By element: Atomic # 1 Polarization: 34.98 SS G_CDS: -0.44 Total: 34.55 kcal Atomic # 6 Polarization: -42.94 SS G_CDS: 3.53 Total: -39.42 kcal Atomic # 7 Polarization: -65.21 SS G_CDS: -1.37 Total: -66.58 kcal Atomic # 8 Polarization: -40.21 SS G_CDS: -1.50 Total: -41.71 kcal Atomic # 14 Polarization: 38.90 SS G_CDS: 2.03 Total: 40.93 kcal Total: -74.47 2.26 -72.22 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611003494.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.862 kcal (2) G-P(sol) polarization free energy of solvation -74.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.219 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds