Wall clock time and date at job start Mon Mar 30 2020 01:51:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53002 * 109.47297 * 2 1 4 4 C 1.53004 * 109.47296 * 180.02562 * 3 2 1 5 5 H 1.08999 * 109.46687 * 55.00142 * 4 3 2 6 6 O 1.42901 * 109.46916 * 295.00053 * 4 3 2 7 7 C 1.52997 * 109.46988 * 175.00164 * 4 3 2 8 8 C 1.50704 * 109.46690 * 185.00023 * 7 4 3 9 9 O 1.21280 * 120.00460 * 359.97438 * 8 7 4 10 10 N 1.34782 * 119.99932 * 179.97438 * 8 7 4 11 11 C 1.39231 * 119.99968 * 175.70960 * 10 8 7 12 12 C 1.39482 * 119.83339 * 215.01279 * 11 10 8 13 13 C 1.36376 * 120.17185 * 179.71660 * 12 11 10 14 14 C 1.40873 * 119.82206 * 0.57687 * 13 12 11 15 15 C 1.41153 * 120.16012 * 179.67456 * 14 13 12 16 16 H 1.07994 * 120.00097 * 214.80206 * 15 14 13 17 17 C 1.39907 * 120.00241 * 34.80374 * 15 14 13 18 18 N 1.30872 * 119.99583 * 355.55750 * 17 15 14 19 19 Si 1.86797 * 120.00438 * 175.55616 * 17 15 14 20 20 H 1.48506 * 109.46935 * 89.99921 * 19 17 15 21 21 H 1.48496 * 109.47170 * 209.99924 * 19 17 15 22 22 H 1.48499 * 109.46889 * 330.00550 * 19 17 15 23 23 C 1.40869 * 119.67511 * 359.70047 * 14 13 12 24 24 C 1.36366 * 119.82757 * 359.97438 * 23 14 13 25 25 H 1.09000 * 109.47690 * 179.97438 * 1 2 3 26 26 H 1.09008 * 109.47237 * 300.00256 * 1 2 3 27 27 H 1.09000 * 109.47003 * 59.99888 * 1 2 3 28 28 H 1.09000 * 109.47003 * 120.00112 * 2 1 3 29 29 H 1.09000 * 109.47393 * 240.00022 * 2 1 3 30 30 H 1.09000 * 109.47185 * 300.00000 * 3 2 1 31 31 H 1.08996 * 109.47128 * 60.00163 * 3 2 1 32 32 H 0.96701 * 114.00322 * 299.99746 * 6 4 3 33 33 H 1.08997 * 109.46960 * 304.99363 * 7 4 3 34 34 H 1.08999 * 109.47514 * 64.99993 * 7 4 3 35 35 H 0.97000 * 119.99449 * 355.70538 * 10 8 7 36 36 H 1.08004 * 119.91441 * 359.97438 * 12 11 10 37 37 H 1.07995 * 120.08991 * 180.25483 * 13 12 11 38 38 H 0.97005 * 119.99887 * 179.97438 * 18 17 15 39 39 H 1.08002 * 120.08267 * 179.97438 * 23 14 13 40 40 H 1.08000 * 119.91675 * 180.02562 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 1 3.9329 0.8532 -0.8427 6 8 4.0468 0.8729 1.2201 7 6 4.0799 2.8795 -0.1263 8 6 5.5818 2.8705 -0.2505 9 8 6.1850 1.8183 -0.2391 10 7 6.2548 4.0317 -0.3742 11 6 7.6469 4.0303 -0.3990 12 6 8.3524 5.0824 0.1847 13 6 9.7160 5.0852 0.1694 14 6 10.4119 4.0277 -0.4487 15 6 11.8232 4.0268 -0.4747 16 1 12.3473 3.6252 -1.3293 17 6 12.5431 4.5461 0.6067 18 7 11.9102 5.1113 1.6031 19 14 14.4075 4.4328 0.6284 20 1 14.9843 5.6404 -0.0153 21 1 14.8818 4.3462 2.0329 22 1 14.8384 3.2219 -0.1153 23 6 9.6923 2.9715 -1.0412 24 6 8.3290 2.9793 -1.0121 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3634 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.6767 1.9563 -0.8900 31 1 1.6767 1.9563 0.8900 32 1 3.7619 1.3472 2.0132 33 1 3.6450 3.3432 -1.0117 34 1 3.7920 3.4460 0.7592 35 1 5.7692 4.8683 -0.4461 36 1 7.8173 5.8950 0.6536 37 1 10.2610 5.8985 0.6253 38 1 12.4093 5.4711 2.3531 39 1 10.2191 2.1576 -1.5172 40 1 7.7759 2.1701 -1.4655 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000611003495.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:05 Heat of formation + Delta-G solvation = -86.693083 kcal Electronic energy + Delta-G solvation = -20701.505992 eV Core-core repulsion = 17480.128356 eV Total energy + Delta-G solvation = -3221.377636 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.80612 -38.01830 -36.91734 -34.38765 -34.20547 -32.90219 -31.31174 -29.55224 -28.91555 -27.36932 -24.84217 -22.69561 -21.47430 -21.29748 -20.65510 -19.51397 -17.34399 -17.02051 -16.47664 -16.21030 -15.82241 -15.15369 -15.02252 -14.18315 -14.07309 -13.90013 -13.67491 -13.33480 -13.01091 -12.62097 -12.26450 -12.08689 -11.94855 -11.78760 -11.63788 -11.43556 -11.32951 -11.12583 -10.93600 -10.88058 -10.81514 -10.68696 -10.02066 -9.94153 -9.45996 -9.37521 -9.03820 -8.80335 -7.51627 -6.82323 -6.58987 -4.31250 2.60711 3.05986 3.10692 3.12360 3.16270 3.38332 3.71041 4.00378 4.37873 4.55247 4.71953 4.74155 4.80809 4.97748 5.07446 5.25682 5.30071 5.44381 5.47273 5.55985 5.65704 5.71304 5.83904 5.86920 6.11905 6.13866 6.21542 6.48578 6.80151 6.96058 7.10187 7.24890 7.33317 7.66963 7.71899 7.78913 7.92025 8.09607 8.31083 8.35270 8.65959 8.83072 8.95740 9.04184 10.32176 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.048093 B = 0.002934 C = 0.002893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 582.064835 B = 9540.497507 C = 9677.255724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.122 4.122 3 C -0.152 4.152 4 C 0.123 3.877 5 H 0.104 0.896 6 O -0.543 6.543 7 C -0.174 4.174 8 C 0.496 3.504 9 O -0.515 6.515 10 N -0.657 5.657 11 C 0.006 3.994 12 C -0.123 4.123 13 C -0.142 4.142 14 C 0.098 3.902 15 C -0.461 4.461 16 H 0.075 0.925 17 C 0.069 3.931 18 N -0.813 5.813 19 Si 0.915 3.085 20 H -0.270 1.270 21 H -0.278 1.278 22 H -0.263 1.263 23 C -0.205 4.205 24 C -0.086 4.086 25 H 0.053 0.947 26 H 0.052 0.948 27 H 0.052 0.948 28 H 0.069 0.931 29 H 0.062 0.938 30 H 0.070 0.930 31 H 0.065 0.935 32 H 0.366 0.634 33 H 0.096 0.904 34 H 0.091 0.909 35 H 0.393 0.607 36 H 0.090 0.910 37 H 0.132 0.868 38 H 0.277 0.723 39 H 0.096 0.904 40 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.924 -1.298 -1.350 18.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.160 4.160 3 C -0.189 4.189 4 C 0.064 3.936 5 H 0.122 0.878 6 O -0.347 6.347 7 C -0.215 4.215 8 C 0.282 3.718 9 O -0.390 6.390 10 N -0.301 5.301 11 C -0.086 4.086 12 C -0.143 4.143 13 C -0.162 4.162 14 C 0.096 3.904 15 C -0.492 4.492 16 H 0.093 0.907 17 C -0.146 4.146 18 N -0.440 5.440 19 Si 0.740 3.260 20 H -0.196 1.196 21 H -0.203 1.203 22 H -0.187 1.187 23 C -0.225 4.225 24 C -0.106 4.106 25 H 0.072 0.928 26 H 0.071 0.929 27 H 0.071 0.929 28 H 0.088 0.912 29 H 0.081 0.919 30 H 0.089 0.911 31 H 0.083 0.917 32 H 0.211 0.789 33 H 0.114 0.886 34 H 0.110 0.890 35 H 0.227 0.773 36 H 0.108 0.892 37 H 0.149 0.851 38 H 0.088 0.912 39 H 0.114 0.886 40 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -17.178 -2.393 -1.516 17.410 hybrid contribution 0.245 0.964 0.538 1.131 sum -16.933 -1.429 -0.977 17.021 Atomic orbital electron populations 1.21789 0.96110 1.01538 1.01535 1.21457 0.95256 0.96396 1.02867 1.22365 0.96082 0.97874 1.02615 1.21672 0.91212 0.91769 0.88990 0.87829 1.86750 1.76912 1.56143 1.14855 1.22471 0.94202 1.00387 1.04448 1.20425 0.89294 0.84314 0.77743 1.90728 1.69472 1.30707 1.48083 1.43058 1.06120 1.08625 1.72286 1.17280 0.80412 1.01064 1.09840 1.20317 0.95154 0.97720 1.01124 1.21190 0.91584 0.99912 1.03467 1.17724 0.93496 0.89366 0.89818 1.19486 0.91397 1.35229 1.03088 0.90650 1.25879 1.00962 0.92793 0.94953 1.69766 1.37457 1.29587 1.07235 0.86196 0.82050 0.79563 0.78150 1.19562 1.20321 1.18736 1.20814 0.93010 0.99401 1.09278 1.20393 0.94278 0.97256 0.98677 0.92818 0.92912 0.92937 0.91215 0.91949 0.91107 0.91669 0.78857 0.88560 0.89019 0.77343 0.89189 0.85061 0.91198 0.88619 0.87529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.06 9.91 37.15 0.37 -0.69 16 2 C -0.12 -1.04 5.83 -26.73 -0.16 -1.19 16 3 C -0.15 -1.22 4.89 -26.73 -0.13 -1.35 16 4 C 0.12 1.40 2.51 -26.73 -0.07 1.33 16 5 H 0.10 1.38 7.96 -51.93 -0.41 0.97 16 6 O -0.54 -7.33 12.11 -49.66 -0.60 -7.94 16 7 C -0.17 -1.90 5.38 -27.88 -0.15 -2.05 16 8 C 0.50 8.48 7.54 -10.98 -0.08 8.40 16 9 O -0.51 -11.29 12.84 -8.87 -0.11 -11.40 16 10 N -0.66 -11.48 5.30 -9.74 -0.05 -11.53 16 11 C 0.01 0.14 6.31 -83.57 -0.53 -0.38 16 12 C -0.12 -2.84 9.90 -39.79 -0.39 -3.24 16 13 C -0.14 -3.70 8.62 -39.26 -0.34 -4.04 16 14 C 0.10 2.69 5.55 -106.80 -0.59 2.10 16 15 C -0.46 -12.52 9.02 -37.85 -0.34 -12.86 16 16 H 0.08 1.96 7.85 -52.49 -0.41 1.55 16 17 C 0.07 1.77 5.42 -17.34 -0.09 1.68 16 18 N -0.81 -21.47 10.60 55.55 0.59 -20.89 16 19 Si 0.92 19.30 29.56 -169.99 -5.03 14.28 16 20 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 21 H -0.28 -5.76 7.11 56.52 0.40 -5.36 16 22 H -0.26 -5.52 7.11 56.52 0.40 -5.12 16 23 C -0.20 -5.33 9.74 -39.26 -0.38 -5.71 16 24 C -0.09 -2.11 8.61 -39.79 -0.34 -2.46 16 25 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 26 H 0.05 0.34 8.14 -51.92 -0.42 -0.08 16 27 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.07 0.66 7.82 -51.93 -0.41 0.25 16 29 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 30 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 31 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.37 3.51 9.05 45.56 0.41 3.92 16 33 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.39 5.28 8.82 -40.82 -0.36 4.92 16 36 H 0.09 1.81 8.06 -52.48 -0.42 1.39 16 37 H 0.13 3.53 6.13 -52.49 -0.32 3.21 16 38 H 0.28 6.70 8.30 -40.82 -0.34 6.36 16 39 H 0.10 2.37 8.06 -52.49 -0.42 1.94 16 40 H 0.11 2.59 6.22 -52.49 -0.33 2.27 16 LS Contribution 334.36 15.07 5.04 5.04 Total: -1.00 -32.41 334.36 -8.59 -40.99 By element: Atomic # 1 Polarization: 17.09 SS G_CDS: -5.19 Total: 11.90 kcal Atomic # 6 Polarization: -17.23 SS G_CDS: -3.23 Total: -20.46 kcal Atomic # 7 Polarization: -32.95 SS G_CDS: 0.54 Total: -32.41 kcal Atomic # 8 Polarization: -18.62 SS G_CDS: -0.72 Total: -19.34 kcal Atomic # 14 Polarization: 19.30 SS G_CDS: -5.03 Total: 14.28 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -32.41 -8.59 -40.99 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611003495.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.701 kcal (2) G-P(sol) polarization free energy of solvation -32.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.992 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds