Wall clock time and date at job start Mon Mar 30 2020 01:51:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53002 * 109.47297 * 2 1 4 4 C 1.53004 * 109.47296 * 180.02562 * 3 2 1 5 5 H 1.08999 * 109.46687 * 55.00142 * 4 3 2 6 6 O 1.42901 * 109.46916 * 295.00053 * 4 3 2 7 7 C 1.52997 * 109.46988 * 175.00164 * 4 3 2 8 8 C 1.50704 * 109.46690 * 185.00023 * 7 4 3 9 9 O 1.21280 * 120.00460 * 359.97438 * 8 7 4 10 10 N 1.34782 * 119.99932 * 179.97438 * 8 7 4 11 11 C 1.39231 * 119.99968 * 175.70960 * 10 8 7 12 12 C 1.39482 * 119.83339 * 215.01279 * 11 10 8 13 13 C 1.36376 * 120.17185 * 179.71660 * 12 11 10 14 14 C 1.40873 * 119.82206 * 0.57687 * 13 12 11 15 15 C 1.41153 * 120.16012 * 179.67456 * 14 13 12 16 16 H 1.07994 * 120.00097 * 214.80206 * 15 14 13 17 17 C 1.39907 * 120.00241 * 34.80374 * 15 14 13 18 18 N 1.30872 * 119.99583 * 355.55750 * 17 15 14 19 19 Si 1.86797 * 120.00438 * 175.55616 * 17 15 14 20 20 H 1.48506 * 109.46935 * 89.99921 * 19 17 15 21 21 H 1.48496 * 109.47170 * 209.99924 * 19 17 15 22 22 H 1.48499 * 109.46889 * 330.00550 * 19 17 15 23 23 C 1.40869 * 119.67511 * 359.70047 * 14 13 12 24 24 C 1.36366 * 119.82757 * 359.97438 * 23 14 13 25 25 H 1.09000 * 109.47690 * 179.97438 * 1 2 3 26 26 H 1.09008 * 109.47237 * 300.00256 * 1 2 3 27 27 H 1.09000 * 109.47003 * 59.99888 * 1 2 3 28 28 H 1.09000 * 109.47003 * 120.00112 * 2 1 3 29 29 H 1.09000 * 109.47393 * 240.00022 * 2 1 3 30 30 H 1.09000 * 109.47185 * 300.00000 * 3 2 1 31 31 H 1.08996 * 109.47128 * 60.00163 * 3 2 1 32 32 H 0.96701 * 114.00322 * 299.99746 * 6 4 3 33 33 H 1.08997 * 109.46960 * 304.99363 * 7 4 3 34 34 H 1.08999 * 109.47514 * 64.99993 * 7 4 3 35 35 H 0.97000 * 119.99449 * 355.70538 * 10 8 7 36 36 H 1.08004 * 119.91441 * 359.97438 * 12 11 10 37 37 H 1.07995 * 120.08991 * 180.25483 * 13 12 11 38 38 H 0.97005 * 119.99887 * 179.97438 * 18 17 15 39 39 H 1.08002 * 120.08267 * 179.97438 * 23 14 13 40 40 H 1.08000 * 119.91675 * 180.02562 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 1 3.9329 0.8532 -0.8427 6 8 4.0468 0.8729 1.2201 7 6 4.0799 2.8795 -0.1263 8 6 5.5818 2.8705 -0.2505 9 8 6.1850 1.8183 -0.2391 10 7 6.2548 4.0317 -0.3742 11 6 7.6469 4.0303 -0.3990 12 6 8.3524 5.0824 0.1847 13 6 9.7160 5.0852 0.1694 14 6 10.4119 4.0277 -0.4487 15 6 11.8232 4.0268 -0.4747 16 1 12.3473 3.6252 -1.3293 17 6 12.5431 4.5461 0.6067 18 7 11.9102 5.1113 1.6031 19 14 14.4075 4.4328 0.6284 20 1 14.9843 5.6404 -0.0153 21 1 14.8818 4.3462 2.0329 22 1 14.8384 3.2219 -0.1153 23 6 9.6923 2.9715 -1.0412 24 6 8.3290 2.9793 -1.0121 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3634 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.6767 1.9563 -0.8900 31 1 1.6767 1.9563 0.8900 32 1 3.7619 1.3472 2.0132 33 1 3.6450 3.3432 -1.0117 34 1 3.7920 3.4460 0.7592 35 1 5.7692 4.8683 -0.4461 36 1 7.8173 5.8950 0.6536 37 1 10.2610 5.8985 0.6253 38 1 12.4093 5.4711 2.3531 39 1 10.2191 2.1576 -1.5172 40 1 7.7759 2.1701 -1.4655 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000611003495.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:04 Heat of formation + Delta-G solvation = -108.131136 kcal Electronic energy + Delta-G solvation = -20702.435616 eV Core-core repulsion = 17480.128356 eV Total energy + Delta-G solvation = -3222.307260 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.25103 -39.39586 -38.34772 -36.09415 -34.97355 -34.68912 -32.36266 -31.47435 -30.65656 -28.33545 -26.56995 -23.87969 -23.11311 -22.35910 -22.05699 -21.00824 -19.27802 -18.44078 -17.76153 -17.36220 -17.00782 -16.85916 -16.09219 -15.69576 -15.31533 -15.04477 -14.90675 -14.63922 -14.41685 -14.09911 -14.00765 -13.60043 -13.23251 -13.05441 -12.82718 -12.73297 -12.62693 -12.49347 -12.47801 -12.13993 -11.78243 -11.61750 -11.48676 -11.39977 -11.19247 -10.89696 -10.71004 -10.45905 -9.47334 -8.71708 -8.50767 -6.33436 0.80928 1.12805 1.38627 1.45222 1.53184 1.88269 2.23556 2.39793 2.80503 3.55559 3.65825 3.75433 3.81426 4.12462 4.22802 4.33859 4.38103 4.46113 4.53641 4.67724 4.72237 4.77153 4.93374 4.97055 5.04371 5.12558 5.14609 5.16882 5.29911 5.35720 5.42699 5.45523 5.50840 5.69051 5.91724 6.03341 6.14758 6.39334 6.67278 6.79611 6.96163 6.97665 7.00250 7.50204 8.42012 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.048093 B = 0.002934 C = 0.002893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 582.064835 B = 9540.497507 C = 9677.255724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.125 4.125 3 C -0.138 4.138 4 C 0.120 3.880 5 H 0.073 0.927 6 O -0.575 6.575 7 C -0.158 4.158 8 C 0.491 3.509 9 O -0.568 6.568 10 N -0.650 5.650 11 C 0.024 3.976 12 C -0.121 4.121 13 C -0.159 4.159 14 C 0.065 3.935 15 C -0.499 4.499 16 H 0.071 0.929 17 C 0.026 3.974 18 N -0.842 5.842 19 Si 0.989 3.011 20 H -0.258 1.258 21 H -0.269 1.269 22 H -0.264 1.264 23 C -0.223 4.223 24 C -0.099 4.099 25 H 0.052 0.948 26 H 0.060 0.940 27 H 0.060 0.940 28 H 0.054 0.946 29 H 0.050 0.950 30 H 0.089 0.911 31 H 0.085 0.915 32 H 0.381 0.619 33 H 0.134 0.866 34 H 0.127 0.873 35 H 0.418 0.582 36 H 0.126 0.874 37 H 0.120 0.880 38 H 0.285 0.715 39 H 0.093 0.907 40 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.093 0.029 -0.885 20.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.163 4.163 3 C -0.176 4.176 4 C 0.061 3.939 5 H 0.091 0.909 6 O -0.381 6.381 7 C -0.198 4.198 8 C 0.280 3.720 9 O -0.446 6.446 10 N -0.296 5.296 11 C -0.070 4.070 12 C -0.141 4.141 13 C -0.179 4.179 14 C 0.063 3.937 15 C -0.530 4.530 16 H 0.089 0.911 17 C -0.185 4.185 18 N -0.470 5.470 19 Si 0.810 3.190 20 H -0.183 1.183 21 H -0.193 1.193 22 H -0.188 1.188 23 C -0.243 4.243 24 C -0.120 4.120 25 H 0.071 0.929 26 H 0.079 0.921 27 H 0.079 0.921 28 H 0.072 0.928 29 H 0.069 0.931 30 H 0.108 0.892 31 H 0.104 0.896 32 H 0.229 0.771 33 H 0.152 0.848 34 H 0.145 0.855 35 H 0.255 0.745 36 H 0.144 0.856 37 H 0.137 0.863 38 H 0.095 0.905 39 H 0.111 0.889 40 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -19.411 -1.029 -1.055 19.467 hybrid contribution 0.747 0.500 0.384 0.977 sum -18.664 -0.529 -0.671 18.684 Atomic orbital electron populations 1.21755 0.94674 1.01843 1.02319 1.21463 0.96480 0.96768 1.01597 1.22255 0.93137 0.97732 1.04473 1.21703 0.93385 0.91411 0.87403 0.90850 1.86711 1.77751 1.57408 1.16253 1.22497 0.88700 1.00840 1.07745 1.21613 0.91856 0.82964 0.75526 1.90719 1.71190 1.32638 1.50090 1.43035 1.04014 1.10395 1.72138 1.17354 0.83096 0.99413 1.07121 1.20586 0.94286 0.98763 1.00445 1.21193 0.93003 0.99523 1.04224 1.18038 0.94223 0.90319 0.91156 1.19706 0.91906 1.37269 1.04084 0.91063 1.26750 1.05876 0.91883 0.94017 1.69826 1.39395 1.30003 1.07779 0.85095 0.75678 0.79741 0.78486 1.18272 1.19342 1.18805 1.20936 0.93940 0.99480 1.09946 1.20504 0.93860 0.98157 0.99437 0.92888 0.92108 0.92081 0.92757 0.93136 0.89207 0.89641 0.77100 0.84841 0.85527 0.74480 0.85578 0.86267 0.90474 0.88882 0.87724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.73 9.91 71.98 0.71 -1.01 16 2 C -0.13 -1.93 5.83 30.59 0.18 -1.75 16 3 C -0.14 -1.77 4.89 30.60 0.15 -1.62 16 4 C 0.12 2.48 2.51 30.59 0.08 2.56 16 5 H 0.07 1.94 7.96 -2.39 -0.02 1.92 16 6 O -0.57 -14.95 12.11 -135.19 -1.64 -16.58 16 7 C -0.16 -2.82 5.38 29.85 0.16 -2.66 16 8 C 0.49 15.78 7.54 87.66 0.66 16.44 16 9 O -0.57 -24.90 12.84 10.76 0.14 -24.76 16 10 N -0.65 -21.00 5.30 -303.10 -1.61 -22.60 16 11 C 0.02 1.06 6.31 38.57 0.24 1.30 16 12 C -0.12 -5.47 9.90 22.13 0.22 -5.25 16 13 C -0.16 -8.49 8.62 22.48 0.19 -8.29 16 14 C 0.06 3.69 5.55 -21.27 -0.12 3.57 16 15 C -0.50 -28.16 9.02 23.39 0.21 -27.94 16 16 H 0.07 3.90 7.85 -2.91 -0.02 3.87 16 17 C 0.03 1.38 5.42 85.24 0.46 1.84 16 18 N -0.84 -45.27 10.60 21.82 0.23 -45.04 16 19 Si 0.99 39.99 29.56 68.60 2.03 42.02 16 20 H -0.26 -9.87 7.11 99.48 0.71 -9.16 16 21 H -0.27 -10.37 7.11 99.48 0.71 -9.66 16 22 H -0.26 -10.58 7.11 99.48 0.71 -9.88 16 23 C -0.22 -12.09 9.74 22.48 0.22 -11.87 16 24 C -0.10 -4.98 8.61 22.13 0.19 -4.79 16 25 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 26 H 0.06 0.61 8.14 -2.38 -0.02 0.60 16 27 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 28 H 0.05 0.99 7.82 -2.39 -0.02 0.97 16 29 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 30 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 31 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 32 H 0.38 6.60 9.05 -74.06 -0.67 5.93 16 33 H 0.13 1.49 8.14 -2.39 -0.02 1.47 16 34 H 0.13 1.49 8.14 -2.39 -0.02 1.47 16 35 H 0.42 9.49 8.82 -92.71 -0.82 8.67 16 36 H 0.13 4.72 8.06 -2.91 -0.02 4.70 16 37 H 0.12 6.58 6.13 -2.91 -0.02 6.56 16 38 H 0.28 13.86 8.30 -92.70 -0.77 13.10 16 39 H 0.09 4.89 8.06 -2.91 -0.02 4.86 16 40 H 0.10 5.24 6.22 -2.91 -0.02 5.22 16 Total: -1.00 -74.42 334.36 2.28 -72.14 By element: Atomic # 1 Polarization: 34.73 SS G_CDS: -0.43 Total: 34.30 kcal Atomic # 6 Polarization: -43.02 SS G_CDS: 3.56 Total: -39.46 kcal Atomic # 7 Polarization: -66.27 SS G_CDS: -1.38 Total: -67.64 kcal Atomic # 8 Polarization: -39.85 SS G_CDS: -1.50 Total: -41.34 kcal Atomic # 14 Polarization: 39.99 SS G_CDS: 2.03 Total: 42.02 kcal Total: -74.42 2.28 -72.14 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611003495.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.994 kcal (2) G-P(sol) polarization free energy of solvation -74.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.410 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.137 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds