Wall clock time and date at job start Mon Mar 30 2020 01:56:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52996 * 109.47143 * 2 1 4 4 C 1.52995 * 109.47416 * 239.99682 * 2 1 3 5 5 O 1.42897 * 109.47423 * 59.99983 * 4 2 1 6 6 C 1.53001 * 109.47110 * 119.99846 * 2 1 3 7 7 N 1.46505 * 109.47046 * 299.99851 * 6 2 1 8 8 C 1.34771 * 120.00394 * 179.97438 * 7 6 2 9 9 O 1.21592 * 119.99579 * 0.02562 * 8 7 6 10 10 C 1.47642 * 120.00628 * 180.02562 * 8 7 6 11 11 C 1.40014 * 119.89046 * 0.25312 * 10 8 7 12 12 C 1.36315 * 120.10857 * 180.25454 * 11 10 8 13 13 C 1.40893 * 119.88481 * 359.47208 * 12 11 10 14 14 C 1.41114 * 120.09748 * 180.29801 * 13 12 11 15 15 H 1.08000 * 120.00330 * 335.06249 * 14 13 12 16 16 C 1.40223 * 119.99644 * 155.06801 * 14 13 12 17 17 N 1.30656 * 120.00207 * 342.19907 * 16 14 13 18 18 Si 1.86803 * 120.00199 * 162.20506 * 16 14 13 19 19 H 1.48503 * 109.47047 * 94.65856 * 18 16 14 20 20 H 1.48504 * 109.47089 * 214.65560 * 18 16 14 21 21 H 1.48498 * 109.46765 * 334.65988 * 18 16 14 22 22 C 1.40884 * 119.79739 * 0.28068 * 13 12 11 23 23 C 1.36315 * 119.88972 * 359.97438 * 22 13 12 24 24 H 1.08991 * 109.47632 * 300.00165 * 1 2 3 25 25 H 1.09000 * 109.46868 * 60.00666 * 1 2 3 26 26 H 1.09004 * 109.47117 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47322 * 179.97438 * 3 2 1 28 28 H 1.09006 * 109.46981 * 299.99734 * 3 2 1 29 29 H 1.08997 * 109.47671 * 59.99490 * 3 2 1 30 30 H 1.09000 * 109.47172 * 179.97438 * 4 2 1 31 31 H 1.09004 * 109.47026 * 300.00116 * 4 2 1 32 32 H 0.96695 * 114.00463 * 180.02562 * 5 4 2 33 33 H 1.09000 * 109.47174 * 180.02562 * 6 2 1 34 34 H 1.08997 * 109.47509 * 60.00223 * 6 2 1 35 35 H 0.97008 * 119.99606 * 0.02562 * 7 6 2 36 36 H 1.08009 * 119.95054 * 0.02770 * 11 10 8 37 37 H 1.07993 * 120.05993 * 179.74600 * 12 11 10 38 38 H 0.96994 * 120.00294 * 179.97438 * 17 16 14 39 39 H 1.08003 * 120.05494 * 180.02562 * 22 13 12 40 40 H 1.07998 * 119.94660 * 179.97438 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2491 5 8 1.5637 -0.0478 -2.4160 6 6 2.0399 -0.7212 1.2493 7 7 1.5516 -0.0305 2.4454 8 6 1.8767 -0.4911 3.6696 9 8 2.5757 -1.4798 3.7812 10 6 1.3842 0.2045 4.8751 11 6 0.5750 1.3396 4.7439 12 6 0.1220 1.9884 5.8539 13 6 0.4603 1.5084 7.1347 14 6 -0.0114 2.1729 8.2868 15 1 -0.2696 3.2205 8.2383 16 6 -0.1447 1.4730 9.4945 17 7 -0.1748 0.1668 9.4928 18 14 -0.2792 2.4082 11.1060 19 1 -1.7112 2.5897 11.4549 20 1 0.3989 1.6410 12.1816 21 1 0.3676 3.7372 10.9625 22 6 1.2704 0.3628 7.2615 23 6 1.7229 -0.2761 6.1456 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5137 -0.8901 26 1 -0.3633 -1.0277 0.0005 27 1 3.1299 1.4425 0.0005 28 1 1.6766 1.9563 -0.8901 29 1 1.6766 1.9564 0.8899 30 1 3.1300 -0.7209 -1.2493 31 1 1.6767 -1.7490 -1.2491 32 1 1.8488 -0.4515 -3.2471 33 1 3.1300 -0.7208 1.2495 34 1 1.6767 -1.7489 1.2493 35 1 0.9936 0.7580 2.3563 36 1 0.3122 1.7040 3.7617 37 1 -0.4987 2.8663 5.7519 38 1 -0.2666 -0.3173 10.3283 39 1 1.5319 -0.0090 8.2412 40 1 2.3444 -1.1541 6.2418 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000611155279.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:24 Heat of formation + Delta-G solvation = -89.144955 kcal Electronic energy + Delta-G solvation = -20986.703038 eV Core-core repulsion = 17765.219081 eV Total energy + Delta-G solvation = -3221.483957 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.49322 -38.19757 -37.02704 -35.56143 -33.87925 -32.62754 -30.11998 -29.50002 -27.31793 -27.06314 -26.29518 -24.82246 -21.89954 -20.83861 -19.66292 -19.07007 -17.76700 -17.50633 -16.72050 -15.54212 -15.43404 -15.35128 -14.51760 -14.30109 -14.11108 -13.92292 -13.36540 -13.19115 -13.15207 -12.83247 -12.57595 -12.21439 -12.14832 -11.87574 -11.76314 -11.36818 -11.21744 -11.07017 -10.97691 -10.89728 -10.66556 -10.61064 -10.18647 -10.05877 -9.53650 -9.32001 -8.98107 -8.57542 -7.69106 -7.55469 -7.01265 -4.59213 2.24963 2.90917 2.95940 3.01608 3.04089 3.61655 3.75027 3.89287 4.23708 4.57166 4.64382 4.66505 4.87115 5.21604 5.32230 5.33930 5.57822 5.65597 5.66209 5.79330 5.87634 5.91948 5.97270 6.01435 6.13686 6.25823 6.28121 6.30823 6.81245 6.84575 6.96469 7.07301 7.11452 7.38444 7.44732 7.62498 7.79432 7.88679 8.06246 8.26181 8.44014 8.63917 8.76446 9.09249 9.90797 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.043186 B = 0.003233 C = 0.003097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 648.207003 B = 8658.575172 C = 9038.576368 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.076 4.076 3 C -0.138 4.138 4 C 0.089 3.911 5 O -0.569 6.569 6 C 0.135 3.865 7 N -0.738 5.738 8 C 0.571 3.429 9 O -0.575 6.575 10 C -0.283 4.283 11 C -0.049 4.049 12 C -0.235 4.235 13 C 0.129 3.871 14 C -0.444 4.444 15 H 0.084 0.916 16 C 0.074 3.926 17 N -0.769 5.769 18 Si 0.913 3.087 19 H -0.268 1.268 20 H -0.272 1.272 21 H -0.257 1.257 22 C -0.183 4.183 23 C -0.036 4.036 24 H 0.057 0.943 25 H 0.064 0.936 26 H 0.054 0.946 27 H 0.054 0.946 28 H 0.064 0.936 29 H 0.057 0.943 30 H 0.048 0.952 31 H 0.048 0.952 32 H 0.377 0.623 33 H 0.062 0.938 34 H 0.062 0.938 35 H 0.396 0.604 36 H 0.088 0.912 37 H 0.097 0.903 38 H 0.287 0.713 39 H 0.120 0.880 40 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.371 0.790 -14.197 14.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.077 4.077 3 C -0.195 4.195 4 C 0.011 3.989 5 O -0.374 6.374 6 C 0.010 3.990 7 N -0.393 5.393 8 C 0.365 3.635 9 O -0.457 6.457 10 C -0.288 4.288 11 C -0.068 4.068 12 C -0.254 4.254 13 C 0.125 3.875 14 C -0.471 4.471 15 H 0.102 0.898 16 C -0.148 4.148 17 N -0.392 5.392 18 Si 0.736 3.264 19 H -0.193 1.193 20 H -0.197 1.197 21 H -0.181 1.181 22 C -0.202 4.202 23 C -0.055 4.055 24 H 0.076 0.924 25 H 0.083 0.917 26 H 0.073 0.927 27 H 0.073 0.927 28 H 0.083 0.917 29 H 0.076 0.924 30 H 0.066 0.934 31 H 0.066 0.934 32 H 0.224 0.776 33 H 0.080 0.920 34 H 0.080 0.920 35 H 0.233 0.767 36 H 0.106 0.894 37 H 0.115 0.885 38 H 0.098 0.902 39 H 0.138 0.862 40 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 1.559 0.258 -13.514 13.606 hybrid contribution -0.156 0.239 0.268 0.392 sum 1.402 0.497 -13.246 13.329 Atomic orbital electron populations 1.21794 0.93461 1.02111 1.02174 1.20798 0.97144 0.96709 0.93028 1.21793 1.00895 0.94658 1.02168 1.22077 0.97233 0.94577 0.85013 1.86457 1.77582 1.57372 1.15940 1.21086 0.98772 0.95750 0.83400 1.45896 1.55498 1.32744 1.05120 1.18598 0.78744 0.83171 0.82947 1.90636 1.40246 1.27642 1.87131 1.18905 1.14586 1.03323 0.91938 1.20351 0.95644 0.94241 0.96601 1.20663 1.08160 1.03972 0.92625 1.17781 0.87182 0.90588 0.91922 1.19830 1.36368 0.97814 0.93102 0.89757 1.26107 0.92177 0.94823 1.01668 1.69752 1.31367 1.08044 1.30076 0.86220 0.79408 0.80802 0.79977 1.19262 1.19715 1.18105 1.21008 1.02009 0.99710 0.97463 1.20475 0.96418 0.97142 0.91470 0.92425 0.91676 0.92673 0.92689 0.91679 0.92435 0.93395 0.93383 0.77623 0.91975 0.91969 0.76703 0.89413 0.88493 0.90178 0.86188 0.88190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.54 8.15 37.15 0.30 -1.24 16 2 C -0.08 -0.85 0.61 -154.51 -0.09 -0.94 16 3 C -0.14 -1.52 8.15 37.16 0.30 -1.22 16 4 C 0.09 0.82 5.91 37.16 0.22 1.04 16 5 O -0.57 -5.01 12.31 -35.23 -0.43 -5.44 16 6 C 0.13 1.88 4.56 -4.04 -0.02 1.86 16 7 N -0.74 -12.26 4.91 -61.31 -0.30 -12.56 16 8 C 0.57 12.26 7.76 -12.42 -0.10 12.17 16 9 O -0.57 -13.96 16.32 5.28 0.09 -13.88 16 10 C -0.28 -6.53 5.89 -104.73 -0.62 -7.14 16 11 C -0.05 -1.06 9.47 -39.61 -0.38 -1.43 16 12 C -0.23 -5.45 9.73 -39.27 -0.38 -5.83 16 13 C 0.13 3.28 5.57 -106.80 -0.60 2.69 16 14 C -0.44 -11.06 9.04 -37.75 -0.34 -11.40 16 15 H 0.08 1.99 7.91 -52.49 -0.42 1.57 16 16 C 0.07 1.74 5.13 -17.31 -0.09 1.65 16 17 N -0.77 -18.90 10.97 55.56 0.61 -18.29 16 18 Si 0.91 17.43 29.60 -169.99 -5.03 12.39 16 19 H -0.27 -5.03 7.11 56.52 0.40 -4.63 16 20 H -0.27 -5.11 7.11 56.52 0.40 -4.71 16 21 H -0.26 -4.88 7.11 56.52 0.40 -4.48 16 22 C -0.18 -4.70 8.63 -39.27 -0.34 -5.04 16 23 C -0.04 -0.88 9.52 -39.61 -0.38 -1.26 16 24 H 0.06 0.66 6.86 -51.93 -0.36 0.31 16 25 H 0.06 0.71 7.68 -51.93 -0.40 0.31 16 26 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 27 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.06 0.70 7.68 -51.93 -0.40 0.30 16 29 H 0.06 0.65 6.86 -51.93 -0.36 0.30 16 30 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 32 H 0.38 1.63 9.12 45.56 0.42 2.05 16 33 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 34 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 35 H 0.40 5.91 4.16 -40.82 -0.17 5.74 16 36 H 0.09 1.55 6.37 -52.48 -0.33 1.21 16 37 H 0.10 2.07 8.06 -52.49 -0.42 1.64 16 38 H 0.29 6.34 8.29 -40.82 -0.34 6.01 16 39 H 0.12 3.15 6.17 -52.48 -0.32 2.83 16 40 H 0.10 2.44 7.63 -52.49 -0.40 2.04 16 LS Contribution 329.25 15.07 4.96 4.96 Total: -1.00 -29.69 329.25 -7.44 -37.13 By element: Atomic # 1 Polarization: 16.59 SS G_CDS: -4.83 Total: 11.76 kcal Atomic # 6 Polarization: -13.58 SS G_CDS: -2.50 Total: -16.08 kcal Atomic # 7 Polarization: -31.15 SS G_CDS: 0.31 Total: -30.85 kcal Atomic # 8 Polarization: -18.97 SS G_CDS: -0.35 Total: -19.32 kcal Atomic # 14 Polarization: 17.43 SS G_CDS: -5.03 Total: 12.39 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -29.69 -7.44 -37.13 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611155279.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.011 kcal (2) G-P(sol) polarization free energy of solvation -29.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.134 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds