Wall clock time and date at job start Mon Mar 30 2020 01:56:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52996 * 109.47143 * 2 1 4 4 C 1.52995 * 109.47416 * 239.99682 * 2 1 3 5 5 O 1.42897 * 109.47423 * 59.99983 * 4 2 1 6 6 C 1.53001 * 109.47110 * 119.99846 * 2 1 3 7 7 N 1.46505 * 109.47046 * 299.99851 * 6 2 1 8 8 C 1.34771 * 120.00394 * 179.97438 * 7 6 2 9 9 O 1.21592 * 119.99579 * 0.02562 * 8 7 6 10 10 C 1.47642 * 120.00628 * 180.02562 * 8 7 6 11 11 C 1.40014 * 119.89046 * 0.25312 * 10 8 7 12 12 C 1.36315 * 120.10857 * 180.25454 * 11 10 8 13 13 C 1.40893 * 119.88481 * 359.47208 * 12 11 10 14 14 C 1.41114 * 120.09748 * 180.29801 * 13 12 11 15 15 H 1.08000 * 120.00330 * 335.06249 * 14 13 12 16 16 C 1.40223 * 119.99644 * 155.06801 * 14 13 12 17 17 N 1.30656 * 120.00207 * 342.19907 * 16 14 13 18 18 Si 1.86803 * 120.00199 * 162.20506 * 16 14 13 19 19 H 1.48503 * 109.47047 * 94.65856 * 18 16 14 20 20 H 1.48504 * 109.47089 * 214.65560 * 18 16 14 21 21 H 1.48498 * 109.46765 * 334.65988 * 18 16 14 22 22 C 1.40884 * 119.79739 * 0.28068 * 13 12 11 23 23 C 1.36315 * 119.88972 * 359.97438 * 22 13 12 24 24 H 1.08991 * 109.47632 * 300.00165 * 1 2 3 25 25 H 1.09000 * 109.46868 * 60.00666 * 1 2 3 26 26 H 1.09004 * 109.47117 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47322 * 179.97438 * 3 2 1 28 28 H 1.09006 * 109.46981 * 299.99734 * 3 2 1 29 29 H 1.08997 * 109.47671 * 59.99490 * 3 2 1 30 30 H 1.09000 * 109.47172 * 179.97438 * 4 2 1 31 31 H 1.09004 * 109.47026 * 300.00116 * 4 2 1 32 32 H 0.96695 * 114.00463 * 180.02562 * 5 4 2 33 33 H 1.09000 * 109.47174 * 180.02562 * 6 2 1 34 34 H 1.08997 * 109.47509 * 60.00223 * 6 2 1 35 35 H 0.97008 * 119.99606 * 0.02562 * 7 6 2 36 36 H 1.08009 * 119.95054 * 0.02770 * 11 10 8 37 37 H 1.07993 * 120.05993 * 179.74600 * 12 11 10 38 38 H 0.96994 * 120.00294 * 179.97438 * 17 16 14 39 39 H 1.08003 * 120.05494 * 180.02562 * 22 13 12 40 40 H 1.07998 * 119.94660 * 179.97438 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2491 5 8 1.5637 -0.0478 -2.4160 6 6 2.0399 -0.7212 1.2493 7 7 1.5516 -0.0305 2.4454 8 6 1.8767 -0.4911 3.6696 9 8 2.5757 -1.4798 3.7812 10 6 1.3842 0.2045 4.8751 11 6 0.5750 1.3396 4.7439 12 6 0.1220 1.9884 5.8539 13 6 0.4603 1.5084 7.1347 14 6 -0.0114 2.1729 8.2868 15 1 -0.2696 3.2205 8.2383 16 6 -0.1447 1.4730 9.4945 17 7 -0.1748 0.1668 9.4928 18 14 -0.2792 2.4082 11.1060 19 1 -1.7112 2.5897 11.4549 20 1 0.3989 1.6410 12.1816 21 1 0.3676 3.7372 10.9625 22 6 1.2704 0.3628 7.2615 23 6 1.7229 -0.2761 6.1456 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5137 -0.8901 26 1 -0.3633 -1.0277 0.0005 27 1 3.1299 1.4425 0.0005 28 1 1.6766 1.9563 -0.8901 29 1 1.6766 1.9564 0.8899 30 1 3.1300 -0.7209 -1.2493 31 1 1.6767 -1.7490 -1.2491 32 1 1.8488 -0.4515 -3.2471 33 1 3.1300 -0.7208 1.2495 34 1 1.6767 -1.7489 1.2493 35 1 0.9936 0.7580 2.3563 36 1 0.3122 1.7040 3.7617 37 1 -0.4987 2.8663 5.7519 38 1 -0.2666 -0.3173 10.3283 39 1 1.5319 -0.0090 8.2412 40 1 2.3444 -1.1541 6.2418 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000611155279.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:24 Heat of formation + Delta-G solvation = -108.670816 kcal Electronic energy + Delta-G solvation = -20987.549743 eV Core-core repulsion = 17765.219081 eV Total energy + Delta-G solvation = -3222.330662 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.97306 -39.43046 -38.65327 -36.55167 -35.68882 -33.97383 -31.94297 -31.31980 -28.36182 -28.18784 -27.51740 -26.14612 -23.63118 -22.66694 -21.30047 -20.09620 -19.35651 -18.69830 -18.05967 -17.08197 -16.94061 -16.42458 -15.74631 -15.70465 -15.54823 -15.35307 -14.85703 -14.54275 -14.42760 -14.26470 -13.98429 -13.66125 -13.46177 -13.23668 -13.06877 -12.81008 -12.75261 -12.62654 -12.36057 -11.94643 -11.86635 -11.78386 -11.50223 -11.36023 -11.11229 -10.83848 -10.74103 -10.06001 -9.57009 -9.40827 -8.79115 -6.48102 0.44364 1.15130 1.37831 1.42453 1.55063 2.11418 2.18138 2.33493 2.79423 3.37202 3.69068 3.75680 3.77090 4.07087 4.27418 4.30764 4.40374 4.41328 4.48356 4.59882 4.72339 4.78383 4.85000 4.97283 5.01751 5.02103 5.03656 5.12741 5.21023 5.25834 5.38314 5.39748 5.55840 5.59294 5.78584 5.95919 6.01746 6.20267 6.55973 6.70976 6.76764 6.89471 6.95394 7.44255 8.16174 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.043186 B = 0.003233 C = 0.003097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 648.207003 B = 8658.575172 C = 9038.576368 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.071 4.071 3 C -0.136 4.136 4 C 0.092 3.908 5 O -0.581 6.581 6 C 0.133 3.867 7 N -0.718 5.718 8 C 0.570 3.430 9 O -0.608 6.608 10 C -0.294 4.294 11 C -0.038 4.038 12 C -0.245 4.245 13 C 0.101 3.899 14 C -0.472 4.472 15 H 0.092 0.908 16 C 0.033 3.967 17 N -0.804 5.804 18 Si 0.989 3.011 19 H -0.258 1.258 20 H -0.267 1.267 21 H -0.254 1.254 22 C -0.203 4.203 23 C -0.049 4.049 24 H 0.052 0.948 25 H 0.069 0.931 26 H 0.054 0.946 27 H 0.055 0.945 28 H 0.069 0.931 29 H 0.052 0.948 30 H 0.057 0.943 31 H 0.056 0.944 32 H 0.397 0.603 33 H 0.060 0.940 34 H 0.058 0.942 35 H 0.407 0.593 36 H 0.131 0.869 37 H 0.116 0.884 38 H 0.295 0.705 39 H 0.104 0.896 40 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.792 2.008 -15.531 15.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.071 4.071 3 C -0.193 4.193 4 C 0.014 3.986 5 O -0.389 6.389 6 C 0.009 3.991 7 N -0.371 5.371 8 C 0.364 3.636 9 O -0.493 6.493 10 C -0.298 4.298 11 C -0.057 4.057 12 C -0.265 4.265 13 C 0.098 3.902 14 C -0.499 4.499 15 H 0.110 0.890 16 C -0.185 4.185 17 N -0.427 5.427 18 Si 0.808 3.192 19 H -0.183 1.183 20 H -0.192 1.192 21 H -0.177 1.177 22 C -0.222 4.222 23 C -0.069 4.069 24 H 0.071 0.929 25 H 0.088 0.912 26 H 0.073 0.927 27 H 0.074 0.926 28 H 0.088 0.912 29 H 0.071 0.929 30 H 0.075 0.925 31 H 0.074 0.926 32 H 0.247 0.753 33 H 0.078 0.922 34 H 0.077 0.923 35 H 0.245 0.755 36 H 0.148 0.852 37 H 0.134 0.866 38 H 0.106 0.894 39 H 0.122 0.878 40 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 0.967 1.488 -14.915 15.021 hybrid contribution 0.031 -0.182 0.547 0.577 sum 0.998 1.306 -14.368 14.462 Atomic orbital electron populations 1.21782 0.93347 1.02111 1.02159 1.20734 0.97123 0.96682 0.92575 1.21780 1.00971 0.94427 1.02172 1.21975 0.97681 0.94526 0.84419 1.86395 1.77855 1.57883 1.16799 1.21249 0.98711 0.95752 0.83365 1.45708 1.54345 1.32578 1.04491 1.18409 0.78544 0.82712 0.83955 1.90617 1.41828 1.29072 1.87771 1.19176 1.14678 1.03959 0.92011 1.20670 0.93916 0.92895 0.98177 1.20937 1.08510 1.04773 0.92242 1.18143 0.87654 0.90864 0.93535 1.20155 1.37346 0.98370 0.94022 0.88956 1.27027 0.91082 0.95498 1.04922 1.69804 1.31726 1.09668 1.31509 0.85088 0.79723 0.79242 0.75140 1.18282 1.19162 1.17690 1.20935 1.03427 1.00830 0.97035 1.20544 0.96750 0.97124 0.92474 0.92909 0.91180 0.92702 0.92590 0.91207 0.92863 0.92527 0.92614 0.75282 0.92169 0.92327 0.75478 0.85156 0.86574 0.89365 0.87826 0.89055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.72 8.15 71.98 0.59 -2.14 16 2 C -0.07 -1.40 0.61 -52.19 -0.03 -1.44 16 3 C -0.14 -2.67 8.15 71.98 0.59 -2.08 16 4 C 0.09 1.45 5.91 71.98 0.43 1.88 16 5 O -0.58 -8.56 12.31 -148.98 -1.83 -10.40 16 6 C 0.13 3.49 4.56 86.38 0.39 3.88 16 7 N -0.72 -22.65 4.91 -466.15 -2.29 -24.94 16 8 C 0.57 24.22 7.76 86.73 0.67 24.89 16 9 O -0.61 -29.76 16.32 -4.01 -0.07 -29.83 16 10 C -0.29 -13.53 5.89 -19.93 -0.12 -13.65 16 11 C -0.04 -1.57 9.47 22.25 0.21 -1.35 16 12 C -0.25 -11.21 9.73 22.47 0.22 -10.99 16 13 C 0.10 5.26 5.57 -21.28 -0.12 5.14 16 14 C -0.47 -23.75 9.04 23.46 0.21 -23.54 16 15 H 0.09 4.34 7.91 -2.91 -0.02 4.31 16 16 C 0.03 1.58 5.13 85.35 0.44 2.02 16 17 N -0.80 -40.35 10.97 21.87 0.24 -40.11 16 18 Si 0.99 35.40 29.60 68.60 2.03 37.43 16 19 H -0.26 -8.83 7.11 99.48 0.71 -8.12 16 20 H -0.27 -9.25 7.11 99.48 0.71 -8.54 16 21 H -0.25 -8.84 7.11 99.48 0.71 -8.13 16 22 C -0.20 -10.85 8.63 22.47 0.19 -10.66 16 23 C -0.05 -2.53 9.52 22.25 0.21 -2.32 16 24 H 0.05 1.08 6.86 -2.39 -0.02 1.07 16 25 H 0.07 1.34 7.68 -2.39 -0.02 1.33 16 26 H 0.05 1.09 8.14 -2.38 -0.02 1.07 16 27 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 28 H 0.07 1.32 7.68 -2.38 -0.02 1.30 16 29 H 0.05 1.07 6.86 -2.39 -0.02 1.05 16 30 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 31 H 0.06 0.80 8.14 -2.38 -0.02 0.78 16 32 H 0.40 2.28 9.12 -74.06 -0.68 1.60 16 33 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 34 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 35 H 0.41 11.11 4.16 -92.70 -0.39 10.72 16 36 H 0.13 4.17 6.37 -2.91 -0.02 4.16 16 37 H 0.12 4.76 8.06 -2.91 -0.02 4.74 16 38 H 0.30 13.28 8.29 -92.71 -0.77 12.51 16 39 H 0.10 5.75 6.17 -2.91 -0.02 5.74 16 40 H 0.09 4.70 7.63 -2.91 -0.02 4.68 16 Total: -1.00 -64.83 329.25 1.97 -62.86 By element: Atomic # 1 Polarization: 35.32 SS G_CDS: 0.00 Total: 35.32 kcal Atomic # 6 Polarization: -34.22 SS G_CDS: 3.88 Total: -30.34 kcal Atomic # 7 Polarization: -63.00 SS G_CDS: -2.05 Total: -65.05 kcal Atomic # 8 Polarization: -38.33 SS G_CDS: -1.90 Total: -40.22 kcal Atomic # 14 Polarization: 35.40 SS G_CDS: 2.03 Total: 37.43 kcal Total: -64.83 1.97 -62.86 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611155279.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.807 kcal (2) G-P(sol) polarization free energy of solvation -64.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.864 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds