Wall clock time and date at job start Mon Mar 30 2020 02:45:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.47222 * 2 1 4 4 C 1.52999 * 109.46783 * 240.00230 * 2 1 3 5 5 O 1.42902 * 109.47204 * 120.00698 * 2 1 3 6 6 C 1.42894 * 114.00278 * 59.99301 * 5 2 1 7 7 C 1.50694 * 109.47281 * 180.02562 * 6 5 2 8 8 C 1.38336 * 119.91704 * 269.72834 * 7 6 5 9 9 C 1.38060 * 120.08263 * 179.76667 * 8 7 6 10 10 C 1.39026 * 119.91333 * 0.52748 * 9 8 7 11 11 N 1.39538 * 120.08091 * 179.70371 * 10 9 8 12 12 C 1.34780 * 119.99821 * 213.20127 * 11 10 9 13 13 O 1.21738 * 120.00158 * 5.12734 * 12 11 10 14 14 C 1.46172 * 119.99545 * 185.13634 * 12 11 10 15 15 H 1.08001 * 120.00226 * 6.07776 * 14 12 11 16 16 C 1.40128 * 119.99818 * 186.08174 * 14 12 11 17 17 N 1.30636 * 119.99771 * 353.81976 * 16 14 12 18 18 Si 1.86795 * 120.00052 * 173.81565 * 16 14 12 19 19 H 1.48498 * 109.47063 * 94.98575 * 18 16 14 20 20 H 1.48501 * 109.47285 * 214.98194 * 18 16 14 21 21 H 1.48502 * 109.47216 * 334.98154 * 18 16 14 22 22 C 1.39027 * 119.83989 * 359.72507 * 10 9 8 23 23 C 1.38066 * 119.91059 * 0.02562 * 22 10 9 24 24 H 1.08997 * 109.47064 * 299.99989 * 1 2 3 25 25 H 1.09001 * 109.46950 * 59.99505 * 1 2 3 26 26 H 1.09001 * 109.47280 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.46808 * 179.97438 * 3 2 1 28 28 H 1.08997 * 109.47088 * 300.00036 * 3 2 1 29 29 H 1.09003 * 109.47034 * 60.00495 * 3 2 1 30 30 H 1.09001 * 109.47151 * 300.00003 * 4 2 1 31 31 H 1.09001 * 109.47161 * 60.00394 * 4 2 1 32 32 H 1.09003 * 109.47537 * 180.02562 * 4 2 1 33 33 H 1.08997 * 109.47328 * 300.00553 * 6 5 2 34 34 H 1.09005 * 109.47144 * 60.00326 * 6 5 2 35 35 H 1.08002 * 119.95466 * 359.97438 * 8 7 6 36 36 H 1.07997 * 120.04065 * 180.25557 * 9 8 7 37 37 H 0.96996 * 119.99867 * 33.20049 * 11 10 9 38 38 H 0.97000 * 119.99804 * 180.02562 * 17 16 14 39 39 H 1.07997 * 120.04808 * 179.97438 * 22 10 9 40 40 H 1.08001 * 119.95548 * 179.97438 * 23 22 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 8 2.0064 -0.6738 1.1667 6 6 1.5847 -2.0356 1.2644 7 6 2.1410 -2.6445 2.5255 8 6 3.3724 -3.2745 2.5025 9 6 3.8876 -3.8293 3.6570 10 6 3.1621 -3.7639 4.8412 11 7 3.6767 -4.3290 6.0087 12 6 2.8438 -4.8742 6.9174 13 8 1.6530 -4.9579 6.6785 14 6 3.3704 -5.3647 8.1897 15 1 4.4075 -5.2024 8.4435 16 6 2.5294 -6.0456 9.0801 17 7 1.2505 -6.1370 8.8302 18 14 3.2373 -6.8226 10.6243 19 1 3.0927 -5.8807 11.7632 20 1 2.5063 -8.0796 10.9257 21 1 4.6755 -7.1252 10.4116 22 6 1.9226 -3.1346 4.8593 23 6 1.4163 -2.5776 3.7019 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 3.1300 1.4424 0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6768 1.9563 0.8901 30 1 1.6766 -1.7489 -1.2493 31 1 1.6766 -0.2073 -2.1392 32 1 3.1300 -0.7217 -1.2492 33 1 0.4958 -2.0778 1.2906 34 1 1.9491 -2.5917 0.4006 35 1 3.9330 -3.3293 1.5810 36 1 4.8508 -4.3173 3.6392 37 1 4.6338 -4.3294 6.1663 38 1 0.6683 -6.6079 9.4468 39 1 1.3561 -3.0823 5.7773 40 1 0.4533 -2.0889 3.7150 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000613980796.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:59 Heat of formation + Delta-G solvation = -71.187600 kcal Electronic energy + Delta-G solvation = -20824.247906 eV Core-core repulsion = 17603.542638 eV Total energy + Delta-G solvation = -3220.705268 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.49411 -38.75894 -36.95141 -34.02922 -33.07260 -32.44260 -30.29592 -29.88440 -27.71501 -27.57567 -26.60705 -24.72297 -22.27674 -21.25404 -20.02757 -19.63517 -17.55282 -16.59467 -16.41821 -15.69030 -15.59951 -15.28673 -14.52349 -14.14401 -14.02818 -13.60721 -13.50971 -13.25238 -12.96510 -12.64518 -12.49778 -12.41113 -12.10595 -12.00787 -11.90038 -11.76321 -11.35981 -11.31876 -11.09073 -11.03146 -10.67400 -10.54350 -10.43480 -10.34330 -9.47062 -9.26413 -8.87588 -8.35246 -7.74840 -7.03797 -6.36345 -4.82094 1.89937 2.05724 3.06366 3.14001 3.17864 3.74224 3.98922 4.32383 4.60782 4.64304 4.67003 4.68710 4.87365 5.19243 5.26649 5.30914 5.32961 5.45143 5.51768 5.57607 5.59923 5.64271 5.65690 5.68193 5.75704 5.88208 6.00419 6.09287 6.10543 6.30036 6.40657 6.62565 6.90591 7.11724 7.18417 7.27907 7.34296 7.46069 7.74760 8.06615 8.18779 8.84439 9.21811 10.37793 10.55811 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.048489 B = 0.003015 C = 0.002940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 577.311883 B = 9284.197342 C = 9520.870928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.103 3.897 3 C -0.137 4.137 4 C -0.178 4.178 5 O -0.370 6.370 6 C 0.110 3.890 7 C -0.143 4.143 8 C -0.078 4.078 9 C -0.182 4.182 10 C 0.201 3.799 11 N -0.700 5.700 12 C 0.543 3.457 13 O -0.560 6.560 14 C -0.539 4.539 15 H 0.072 0.928 16 C 0.086 3.914 17 N -0.759 5.759 18 Si 0.912 3.088 19 H -0.271 1.271 20 H -0.277 1.277 21 H -0.263 1.263 22 C -0.133 4.133 23 C -0.078 4.078 24 H 0.065 0.935 25 H 0.063 0.937 26 H 0.060 0.940 27 H 0.062 0.938 28 H 0.067 0.933 29 H 0.063 0.937 30 H 0.060 0.940 31 H 0.063 0.937 32 H 0.063 0.937 33 H 0.053 0.947 34 H 0.052 0.948 35 H 0.113 0.887 36 H 0.117 0.883 37 H 0.393 0.607 38 H 0.272 0.728 39 H 0.139 0.861 40 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.958 9.639 -15.726 18.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.064 3.936 3 C -0.194 4.194 4 C -0.236 4.236 5 O -0.290 6.290 6 C 0.034 3.966 7 C -0.145 4.145 8 C -0.097 4.097 9 C -0.203 4.203 10 C 0.102 3.898 11 N -0.343 5.343 12 C 0.350 3.650 13 O -0.441 6.441 14 C -0.575 4.575 15 H 0.091 0.909 16 C -0.135 4.135 17 N -0.387 5.387 18 Si 0.736 3.264 19 H -0.196 1.196 20 H -0.202 1.202 21 H -0.187 1.187 22 C -0.154 4.154 23 C -0.097 4.097 24 H 0.084 0.916 25 H 0.082 0.918 26 H 0.079 0.921 27 H 0.081 0.919 28 H 0.085 0.915 29 H 0.082 0.918 30 H 0.079 0.921 31 H 0.082 0.918 32 H 0.082 0.918 33 H 0.071 0.929 34 H 0.070 0.930 35 H 0.131 0.869 36 H 0.135 0.865 37 H 0.227 0.773 38 H 0.083 0.917 39 H 0.156 0.844 40 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 1.020 9.545 -15.576 18.297 hybrid contribution 0.653 -0.635 0.614 1.098 sum 1.673 8.911 -14.963 17.495 Atomic orbital electron populations 1.22438 0.95968 1.02612 1.02637 1.21465 0.93045 0.93222 0.85865 1.21742 1.01915 0.93507 1.02223 1.22433 1.02194 1.01092 0.97850 1.88098 1.74343 1.24167 1.42366 1.21230 0.97789 0.82302 0.95247 1.19260 0.96739 1.04003 0.94472 1.20580 0.94483 0.97424 0.97184 1.20828 1.01806 1.05993 0.91699 1.18039 0.93811 0.91006 0.86986 1.44198 1.10655 1.60383 1.19061 1.18389 0.85497 0.77562 0.83599 1.90636 1.15584 1.59186 1.78723 1.20860 0.97595 1.38510 1.00567 0.90948 1.25748 0.94283 0.94615 0.98836 1.69991 1.03894 1.30823 1.33956 0.86275 0.79925 0.78903 0.81252 1.19646 1.20237 1.18705 1.21319 0.96655 0.97940 0.99498 1.20816 0.98961 0.98030 0.91849 0.91641 0.91810 0.92088 0.91875 0.91456 0.91809 0.92126 0.91801 0.91750 0.92874 0.92991 0.86902 0.86502 0.77333 0.91733 0.84350 0.86783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.65 8.25 37.16 0.31 -1.35 16 2 C 0.10 1.07 1.14 -90.62 -0.10 0.97 16 3 C -0.14 -1.23 8.84 37.16 0.33 -0.90 16 4 C -0.18 -1.57 8.25 37.16 0.31 -1.26 16 5 O -0.37 -5.15 9.97 -35.23 -0.35 -5.50 16 6 C 0.11 1.50 5.26 36.00 0.19 1.69 16 7 C -0.14 -2.39 5.51 -104.56 -0.58 -2.97 16 8 C -0.08 -1.28 9.69 -39.61 -0.38 -1.66 16 9 C -0.18 -3.27 9.97 -39.35 -0.39 -3.66 16 10 C 0.20 4.32 6.28 -83.77 -0.53 3.79 16 11 N -0.70 -15.97 5.32 -11.19 -0.06 -16.03 16 12 C 0.54 15.13 7.47 -13.07 -0.10 15.03 16 13 O -0.56 -17.50 12.70 5.15 0.07 -17.44 16 14 C -0.54 -14.76 9.53 -35.69 -0.34 -15.10 16 15 H 0.07 1.80 7.86 -52.49 -0.41 1.39 16 16 C 0.09 2.33 5.50 -17.35 -0.10 2.24 16 17 N -0.76 -22.03 11.85 55.55 0.66 -21.38 16 18 Si 0.91 19.50 29.56 -169.99 -5.03 14.47 16 19 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 20 H -0.28 -5.82 7.11 56.52 0.40 -5.42 16 21 H -0.26 -5.44 7.11 56.52 0.40 -5.03 16 22 C -0.13 -2.93 8.65 -39.35 -0.34 -3.27 16 23 C -0.08 -1.44 9.69 -39.61 -0.38 -1.83 16 24 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 25 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.06 0.57 6.54 -51.93 -0.34 0.23 16 27 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.06 0.53 6.54 -51.93 -0.34 0.19 16 31 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.05 0.68 6.36 -51.93 -0.33 0.34 16 34 H 0.05 0.63 6.36 -51.93 -0.33 0.30 16 35 H 0.11 1.53 8.06 -52.49 -0.42 1.11 16 36 H 0.12 1.83 8.06 -52.49 -0.42 1.40 16 37 H 0.39 7.67 8.79 -40.82 -0.36 7.31 16 38 H 0.27 7.14 8.29 -40.82 -0.34 6.80 16 39 H 0.14 3.44 6.40 -52.49 -0.34 3.10 16 40 H 0.11 1.89 8.06 -52.49 -0.42 1.47 16 LS Contribution 333.07 15.07 5.02 5.02 Total: -1.00 -32.77 333.07 -7.61 -40.38 By element: Atomic # 1 Polarization: 14.56 SS G_CDS: -5.81 Total: 8.75 kcal Atomic # 6 Polarization: -6.17 SS G_CDS: -2.11 Total: -8.28 kcal Atomic # 7 Polarization: -38.01 SS G_CDS: 0.60 Total: -37.41 kcal Atomic # 8 Polarization: -22.65 SS G_CDS: -0.29 Total: -22.93 kcal Atomic # 14 Polarization: 19.50 SS G_CDS: -5.03 Total: 14.47 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -32.77 -7.61 -40.38 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000613980796.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.811 kcal (2) G-P(sol) polarization free energy of solvation -32.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.377 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds