Wall clock time and date at job start Mon Mar 30 2020 02:45:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.47222 * 2 1 4 4 C 1.52999 * 109.46783 * 240.00230 * 2 1 3 5 5 O 1.42902 * 109.47204 * 120.00698 * 2 1 3 6 6 C 1.42894 * 114.00278 * 59.99301 * 5 2 1 7 7 C 1.50694 * 109.47281 * 180.02562 * 6 5 2 8 8 C 1.38336 * 119.91704 * 269.72834 * 7 6 5 9 9 C 1.38060 * 120.08263 * 179.76667 * 8 7 6 10 10 C 1.39026 * 119.91333 * 0.52748 * 9 8 7 11 11 N 1.39538 * 120.08091 * 179.70371 * 10 9 8 12 12 C 1.34780 * 119.99821 * 213.20127 * 11 10 9 13 13 O 1.21738 * 120.00158 * 5.12734 * 12 11 10 14 14 C 1.46172 * 119.99545 * 185.13634 * 12 11 10 15 15 H 1.08001 * 120.00226 * 6.07776 * 14 12 11 16 16 C 1.40128 * 119.99818 * 186.08174 * 14 12 11 17 17 N 1.30636 * 119.99771 * 353.81976 * 16 14 12 18 18 Si 1.86795 * 120.00052 * 173.81565 * 16 14 12 19 19 H 1.48498 * 109.47063 * 94.98575 * 18 16 14 20 20 H 1.48501 * 109.47285 * 214.98194 * 18 16 14 21 21 H 1.48502 * 109.47216 * 334.98154 * 18 16 14 22 22 C 1.39027 * 119.83989 * 359.72507 * 10 9 8 23 23 C 1.38066 * 119.91059 * 0.02562 * 22 10 9 24 24 H 1.08997 * 109.47064 * 299.99989 * 1 2 3 25 25 H 1.09001 * 109.46950 * 59.99505 * 1 2 3 26 26 H 1.09001 * 109.47280 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.46808 * 179.97438 * 3 2 1 28 28 H 1.08997 * 109.47088 * 300.00036 * 3 2 1 29 29 H 1.09003 * 109.47034 * 60.00495 * 3 2 1 30 30 H 1.09001 * 109.47151 * 300.00003 * 4 2 1 31 31 H 1.09001 * 109.47161 * 60.00394 * 4 2 1 32 32 H 1.09003 * 109.47537 * 180.02562 * 4 2 1 33 33 H 1.08997 * 109.47328 * 300.00553 * 6 5 2 34 34 H 1.09005 * 109.47144 * 60.00326 * 6 5 2 35 35 H 1.08002 * 119.95466 * 359.97438 * 8 7 6 36 36 H 1.07997 * 120.04065 * 180.25557 * 9 8 7 37 37 H 0.96996 * 119.99867 * 33.20049 * 11 10 9 38 38 H 0.97000 * 119.99804 * 180.02562 * 17 16 14 39 39 H 1.07997 * 120.04808 * 179.97438 * 22 10 9 40 40 H 1.08001 * 119.95548 * 179.97438 * 23 22 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 8 2.0064 -0.6738 1.1667 6 6 1.5847 -2.0356 1.2644 7 6 2.1410 -2.6445 2.5255 8 6 3.3724 -3.2745 2.5025 9 6 3.8876 -3.8293 3.6570 10 6 3.1621 -3.7639 4.8412 11 7 3.6767 -4.3290 6.0087 12 6 2.8438 -4.8742 6.9174 13 8 1.6530 -4.9579 6.6785 14 6 3.3704 -5.3647 8.1897 15 1 4.4075 -5.2024 8.4435 16 6 2.5294 -6.0456 9.0801 17 7 1.2505 -6.1370 8.8302 18 14 3.2373 -6.8226 10.6243 19 1 3.0927 -5.8807 11.7632 20 1 2.5063 -8.0796 10.9257 21 1 4.6755 -7.1252 10.4116 22 6 1.9226 -3.1346 4.8593 23 6 1.4163 -2.5776 3.7019 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 3.1300 1.4424 0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6768 1.9563 0.8901 30 1 1.6766 -1.7489 -1.2493 31 1 1.6766 -0.2073 -2.1392 32 1 3.1300 -0.7217 -1.2492 33 1 0.4958 -2.0778 1.2906 34 1 1.9491 -2.5917 0.4006 35 1 3.9330 -3.3293 1.5810 36 1 4.8508 -4.3173 3.6392 37 1 4.6338 -4.3294 6.1663 38 1 0.6683 -6.6079 9.4468 39 1 1.3561 -3.0823 5.7773 40 1 0.4533 -2.0889 3.7150 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000613980796.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:58 Heat of formation + Delta-G solvation = -92.482430 kcal Electronic energy + Delta-G solvation = -20825.171319 eV Core-core repulsion = 17603.542638 eV Total energy + Delta-G solvation = -3221.628681 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.94549 -39.95615 -38.68301 -35.60037 -34.63881 -34.14601 -31.78890 -31.35975 -28.80067 -28.25544 -28.21756 -26.11256 -23.82544 -22.85793 -21.41850 -20.83344 -19.48600 -18.05512 -17.59404 -17.44522 -16.90317 -16.55649 -15.94965 -15.57296 -15.34769 -14.87312 -14.74176 -14.53200 -14.32912 -14.30830 -14.02057 -13.46474 -13.26059 -13.09154 -12.84899 -12.80048 -12.79419 -12.71488 -12.60952 -12.23420 -12.17066 -12.04587 -11.91423 -11.42049 -11.04999 -10.78696 -10.40209 -10.01092 -9.71671 -8.74307 -8.39339 -6.95921 0.40863 0.56401 1.38957 1.40010 1.56763 2.20225 2.32960 2.68855 2.92235 3.18168 3.55990 3.87857 3.91528 4.00784 4.08439 4.15909 4.22599 4.35604 4.40935 4.57167 4.68958 4.73789 4.80705 4.85617 4.88752 4.92229 4.98073 5.00545 5.14544 5.19756 5.24314 5.39314 5.40755 5.43658 5.51516 5.72160 5.79641 5.93884 6.15488 6.38956 6.43607 6.76134 7.32423 8.33335 8.54976 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.048489 B = 0.003015 C = 0.002940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 577.311883 B = 9284.197342 C = 9520.870928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.093 3.907 3 C -0.136 4.136 4 C -0.175 4.175 5 O -0.394 6.394 6 C 0.114 3.886 7 C -0.134 4.134 8 C -0.072 4.072 9 C -0.170 4.170 10 C 0.164 3.836 11 N -0.694 5.694 12 C 0.529 3.471 13 O -0.607 6.607 14 C -0.567 4.567 15 H 0.093 0.907 16 C 0.029 3.971 17 N -0.813 5.813 18 Si 1.002 2.998 19 H -0.262 1.262 20 H -0.272 1.272 21 H -0.246 1.246 22 C -0.162 4.162 23 C -0.084 4.084 24 H 0.053 0.947 25 H 0.084 0.916 26 H 0.059 0.941 27 H 0.058 0.942 28 H 0.091 0.909 29 H 0.052 0.948 30 H 0.061 0.939 31 H 0.083 0.917 32 H 0.061 0.939 33 H 0.060 0.940 34 H 0.076 0.924 35 H 0.154 0.846 36 H 0.145 0.855 37 H 0.408 0.592 38 H 0.278 0.722 39 H 0.094 0.906 40 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.653 9.804 -17.678 20.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.055 3.945 3 C -0.194 4.194 4 C -0.232 4.232 5 O -0.314 6.314 6 C 0.038 3.962 7 C -0.135 4.135 8 C -0.090 4.090 9 C -0.191 4.191 10 C 0.066 3.934 11 N -0.338 5.338 12 C 0.335 3.665 13 O -0.493 6.493 14 C -0.602 4.602 15 H 0.111 0.889 16 C -0.188 4.188 17 N -0.442 5.442 18 Si 0.821 3.179 19 H -0.187 1.187 20 H -0.196 1.196 21 H -0.169 1.169 22 C -0.183 4.183 23 C -0.103 4.103 24 H 0.072 0.928 25 H 0.103 0.897 26 H 0.078 0.922 27 H 0.077 0.923 28 H 0.110 0.890 29 H 0.071 0.929 30 H 0.080 0.920 31 H 0.102 0.898 32 H 0.080 0.920 33 H 0.078 0.922 34 H 0.094 0.906 35 H 0.171 0.829 36 H 0.163 0.837 37 H 0.243 0.757 38 H 0.088 0.912 39 H 0.112 0.888 40 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 2.756 9.749 -17.579 20.290 hybrid contribution 0.098 -0.543 1.028 1.167 sum 2.854 9.206 -16.551 19.153 Atomic orbital electron populations 1.22437 0.95257 1.02701 1.03174 1.21766 0.93739 0.93639 0.85371 1.21782 1.01696 0.92930 1.02947 1.22407 1.02035 1.01151 0.97654 1.88051 1.74879 1.24082 1.44434 1.21195 0.98156 0.82746 0.94095 1.19689 0.96418 1.02546 0.94831 1.21059 0.94298 0.95641 0.98032 1.21122 1.02303 1.05082 0.90608 1.18308 0.94568 0.92718 0.87782 1.43737 1.10811 1.60144 1.19095 1.18760 0.85371 0.77561 0.84761 1.90593 1.17641 1.61141 1.79920 1.21406 0.98817 1.39020 1.00969 0.88871 1.27042 0.94354 0.94553 1.02818 1.70154 1.05967 1.32080 1.36006 0.84933 0.79601 0.77703 0.75651 1.18651 1.19629 1.16948 1.21122 0.97438 1.00571 0.99191 1.20957 0.99785 0.97854 0.91680 0.92764 0.89675 0.92215 0.92255 0.89006 0.92854 0.92036 0.89824 0.91987 0.92183 0.90649 0.82853 0.83719 0.75673 0.91201 0.88780 0.85694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.89 8.25 71.98 0.59 -2.29 16 2 C 0.09 1.70 1.14 -10.79 -0.01 1.69 16 3 C -0.14 -2.17 8.84 71.98 0.64 -1.53 16 4 C -0.18 -2.49 8.25 71.98 0.59 -1.90 16 5 O -0.39 -10.13 9.97 -148.98 -1.49 -11.62 16 6 C 0.11 2.81 5.26 71.23 0.37 3.18 16 7 C -0.13 -4.25 5.51 -19.82 -0.11 -4.36 16 8 C -0.07 -2.15 9.69 22.25 0.22 -1.94 16 9 C -0.17 -5.86 9.97 22.42 0.22 -5.64 16 10 C 0.16 7.23 6.28 38.29 0.24 7.47 16 11 N -0.69 -32.78 5.32 -307.53 -1.64 -34.41 16 12 C 0.53 30.93 7.47 86.30 0.64 31.57 16 13 O -0.61 -40.56 12.70 -4.47 -0.06 -40.61 16 14 C -0.57 -31.77 9.53 24.79 0.24 -31.54 16 15 H 0.09 4.64 7.86 -2.91 -0.02 4.61 16 16 C 0.03 1.58 5.50 85.33 0.47 2.04 16 17 N -0.81 -49.19 11.85 21.85 0.26 -48.93 16 18 Si 1.00 40.15 29.56 68.60 2.03 42.18 16 19 H -0.26 -10.02 7.11 99.48 0.71 -9.31 16 20 H -0.27 -10.51 7.11 99.48 0.71 -9.81 16 21 H -0.25 -9.12 7.11 99.48 0.71 -8.41 16 22 C -0.16 -7.57 8.65 22.42 0.19 -7.37 16 23 C -0.08 -3.20 9.69 22.25 0.22 -2.98 16 24 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 25 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 26 H 0.06 0.97 6.54 -2.39 -0.02 0.96 16 27 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 28 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 29 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 30 H 0.06 0.86 6.54 -2.39 -0.02 0.85 16 31 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 32 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 33 H 0.06 1.40 6.36 -2.39 -0.02 1.39 16 34 H 0.08 1.53 6.36 -2.38 -0.02 1.51 16 35 H 0.15 3.41 8.06 -2.91 -0.02 3.38 16 36 H 0.15 4.11 8.06 -2.91 -0.02 4.09 16 37 H 0.41 16.14 8.79 -92.71 -0.82 15.32 16 38 H 0.28 15.16 8.29 -92.71 -0.77 14.39 16 39 H 0.09 5.18 6.40 -2.91 -0.02 5.16 16 40 H 0.13 4.31 8.06 -2.91 -0.02 4.28 16 Total: -1.00 -75.89 333.07 3.85 -72.04 By element: Atomic # 1 Polarization: 34.72 SS G_CDS: 0.23 Total: 34.95 kcal Atomic # 6 Polarization: -18.11 SS G_CDS: 4.52 Total: -13.59 kcal Atomic # 7 Polarization: -81.97 SS G_CDS: -1.38 Total: -83.35 kcal Atomic # 8 Polarization: -50.69 SS G_CDS: -1.54 Total: -52.23 kcal Atomic # 14 Polarization: 40.15 SS G_CDS: 2.03 Total: 42.18 kcal Total: -75.89 3.85 -72.04 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000613980796.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.440 kcal (2) G-P(sol) polarization free energy of solvation -75.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.042 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds