Wall clock time and date at job start Mon Mar 30 2020 01:30:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53007 * 109.46986 * 2 1 4 4 C 1.53001 * 109.47276 * 119.99877 * 2 1 3 5 5 C 1.52990 * 109.47301 * 65.00228 * 4 2 1 6 6 H 1.09010 * 109.47177 * 305.00348 * 5 4 2 7 7 N 1.46495 * 109.47296 * 64.99633 * 5 4 2 8 8 C 1.38860 * 120.00682 * 205.27821 * 7 5 4 9 9 C 1.39573 * 119.83599 * 359.45029 * 8 7 5 10 10 C 1.36339 * 120.15851 * 179.71645 * 9 8 7 11 11 C 1.40892 * 119.83596 * 0.55942 * 10 9 8 12 12 C 1.41132 * 120.15409 * 179.69786 * 11 10 9 13 13 H 1.08002 * 119.99881 * 204.62455 * 12 11 10 14 14 C 1.39860 * 120.00212 * 24.62077 * 12 11 10 15 15 N 1.30905 * 119.99899 * 17.96952 * 14 12 11 16 16 Si 1.86804 * 120.00112 * 197.96660 * 14 12 11 17 17 H 1.48498 * 109.47059 * 359.97438 * 16 14 12 18 18 H 1.48496 * 109.47251 * 120.00054 * 16 14 12 19 19 H 1.48500 * 109.47031 * 240.00316 * 16 14 12 20 20 C 1.40888 * 119.68907 * 359.71520 * 11 10 9 21 21 C 1.36347 * 119.83535 * 0.02562 * 20 11 10 22 22 C 1.50700 * 109.47395 * 185.00153 * 5 4 2 23 23 O 1.20831 * 119.99878 * 239.99678 * 22 5 4 24 24 O 1.34220 * 120.00037 * 59.99810 * 22 5 4 25 25 H 1.09006 * 109.47328 * 299.99846 * 1 2 3 26 26 H 1.08996 * 109.47611 * 59.99938 * 1 2 3 27 27 H 1.09001 * 109.46837 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47454 * 240.00425 * 2 1 3 29 29 H 1.08995 * 109.47207 * 179.97438 * 3 2 1 30 30 H 1.09006 * 109.46946 * 300.00517 * 3 2 1 31 31 H 1.09006 * 109.46961 * 59.99930 * 3 2 1 32 32 H 1.09002 * 109.46961 * 305.00112 * 4 2 1 33 33 H 1.09000 * 109.46785 * 185.00567 * 4 2 1 34 34 H 0.97002 * 119.99762 * 25.00609 * 7 5 4 35 35 H 1.08001 * 119.91721 * 359.97438 * 9 8 7 36 36 H 1.08002 * 120.08462 * 180.27480 * 10 9 8 37 37 H 0.97004 * 119.99851 * 180.02562 * 15 14 12 38 38 H 1.07988 * 120.08132 * 179.97438 * 20 11 10 39 39 H 1.07994 * 119.91844 * 179.97438 * 21 20 11 40 40 H 0.96701 * 117.00158 * 180.02562 * 24 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.6354 -2.1954 1.1880 6 1 0.5563 -2.2707 1.0527 7 7 2.3147 -2.8420 0.0627 8 6 1.7600 -3.9693 -0.5285 9 6 0.5606 -4.4904 -0.0405 10 6 0.0071 -5.5935 -0.6197 11 6 0.6548 -6.2146 -1.7059 12 6 0.0911 -7.3606 -2.3064 13 1 0.7224 -8.0584 -2.8364 14 6 -1.2851 -7.5927 -2.2150 15 7 -2.0943 -6.6139 -1.8977 16 14 -1.9685 -9.2995 -2.5459 17 1 -0.8546 -10.2219 -2.8830 18 1 -2.6723 -9.7941 -1.3355 19 1 -2.9217 -9.2391 -3.6830 20 6 1.8681 -5.6864 -2.1895 21 6 2.4074 -4.5795 -1.6038 22 6 2.0295 -2.8783 2.4723 23 8 2.7990 -3.8096 2.4499 24 8 1.5257 -2.4520 3.6411 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 1.8933 -0.5137 -0.8900 29 1 3.1299 1.4426 0.0005 30 1 1.6765 1.9564 -0.8900 31 1 1.6766 1.9564 0.8900 32 1 1.6054 -0.2617 2.1370 33 1 3.1263 -0.6442 1.2951 34 1 3.1502 -2.4802 -0.2721 35 1 0.0678 -4.0160 0.7953 36 1 -0.9233 -5.9931 -0.2439 37 1 -3.0488 -6.7750 -1.8339 38 1 2.3702 -6.1576 -3.0214 39 1 3.3376 -4.1737 -1.9732 40 1 1.8081 -2.9212 4.4381 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695169184.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:58 Heat of formation + Delta-G solvation = -83.440194 kcal Electronic energy + Delta-G solvation = -21601.402049 eV Core-core repulsion = 18380.165469 eV Total energy + Delta-G solvation = -3221.236580 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.19990 -38.06822 -36.89012 -35.85038 -34.43928 -32.89386 -30.15815 -29.48659 -27.83887 -27.17492 -24.93455 -24.26588 -21.63499 -20.86373 -20.21704 -19.42652 -17.82288 -17.22516 -16.68512 -16.40585 -15.29579 -15.06518 -14.94482 -14.78830 -14.02126 -13.85080 -13.30614 -12.92183 -12.79523 -12.53231 -12.25322 -12.19684 -12.00685 -11.80240 -11.57365 -11.36742 -11.27437 -11.06156 -10.99994 -10.85635 -10.62837 -10.59416 -10.53329 -10.15206 -9.71308 -9.31841 -9.25465 -8.64016 -7.49901 -6.66585 -6.45566 -4.04982 2.50282 2.85845 3.10111 3.14344 3.15894 3.21460 3.44862 4.05343 4.14667 4.69190 4.77023 4.84375 4.89446 5.20715 5.38680 5.50400 5.58290 5.70067 5.71264 5.81156 5.84184 5.89916 5.94717 6.14109 6.22636 6.29359 6.37155 6.39111 6.71736 6.83635 6.90566 7.18796 7.34353 7.49374 7.67302 7.80165 8.12209 8.15742 8.26751 8.44137 8.60768 8.76674 9.05370 9.13335 10.36151 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.021438 B = 0.004445 C = 0.004240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1305.794464 B = 6296.996342 C = 6602.836674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.094 4.094 3 C -0.146 4.146 4 C -0.114 4.114 5 C 0.175 3.825 6 H 0.115 0.885 7 N -0.727 5.727 8 C 0.090 3.910 9 C -0.159 4.159 10 C -0.125 4.125 11 C 0.078 3.922 12 C -0.466 4.466 13 H 0.073 0.927 14 C 0.075 3.925 15 N -0.807 5.807 16 Si 0.902 3.098 17 H -0.262 1.262 18 H -0.274 1.274 19 H -0.277 1.277 20 C -0.188 4.188 21 C -0.149 4.149 22 C 0.446 3.554 23 O -0.497 6.497 24 O -0.526 6.526 25 H 0.053 0.947 26 H 0.054 0.946 27 H 0.062 0.938 28 H 0.081 0.919 29 H 0.052 0.948 30 H 0.055 0.945 31 H 0.053 0.947 32 H 0.084 0.916 33 H 0.068 0.932 34 H 0.391 0.609 35 H 0.081 0.919 36 H 0.118 0.882 37 H 0.276 0.724 38 H 0.092 0.908 39 H 0.087 0.913 40 H 0.400 0.600 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.767 12.757 6.591 14.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.112 4.112 3 C -0.203 4.203 4 C -0.152 4.152 5 C 0.065 3.935 6 H 0.132 0.868 7 N -0.363 5.363 8 C -0.006 4.006 9 C -0.181 4.181 10 C -0.145 4.145 11 C 0.075 3.925 12 C -0.497 4.497 13 H 0.092 0.908 14 C -0.140 4.140 15 N -0.434 5.434 16 Si 0.727 3.273 17 H -0.186 1.186 18 H -0.200 1.200 19 H -0.202 1.202 20 C -0.208 4.208 21 C -0.170 4.170 22 C 0.285 3.715 23 O -0.382 6.382 24 O -0.337 6.337 25 H 0.072 0.928 26 H 0.073 0.927 27 H 0.081 0.919 28 H 0.099 0.901 29 H 0.071 0.929 30 H 0.074 0.926 31 H 0.072 0.928 32 H 0.102 0.898 33 H 0.086 0.914 34 H 0.224 0.776 35 H 0.100 0.900 36 H 0.136 0.864 37 H 0.086 0.914 38 H 0.111 0.889 39 H 0.106 0.894 40 H 0.258 0.742 Dipole moment (debyes) X Y Z Total from point charges 3.470 12.734 6.341 14.643 hybrid contribution 0.100 -1.079 0.387 1.150 sum 3.570 11.656 6.728 13.924 Atomic orbital electron populations 1.21900 0.94916 1.02498 1.01502 1.21081 0.96347 0.95639 0.98183 1.21838 1.00723 0.96065 1.01691 1.21860 1.01536 0.92076 0.99747 1.20260 1.00147 0.91353 0.81790 0.86773 1.43615 1.27325 1.31713 1.33597 1.17246 0.95348 0.90701 0.97296 1.20020 0.96138 1.00138 1.01776 1.20902 1.00832 0.96323 0.96412 1.17505 0.91213 0.92711 0.91038 1.19416 0.92336 1.06732 1.31174 0.90837 1.25798 0.97221 0.97837 0.93162 1.69863 1.04544 1.31670 1.37298 0.86367 0.79266 0.83153 0.78500 1.18599 1.19953 1.20239 1.20544 1.00100 0.98237 1.01921 1.19768 0.99558 0.99034 0.98675 1.25287 0.77888 0.82465 0.85910 1.90716 1.33125 1.27368 1.87011 1.84582 1.69485 1.61850 1.17813 0.92838 0.92659 0.91893 0.90099 0.92891 0.92618 0.92820 0.89781 0.91359 0.77552 0.90047 0.86397 0.91358 0.88943 0.89445 0.74228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.67 8.95 37.16 0.33 -1.34 16 2 C -0.09 -1.00 2.86 -90.62 -0.26 -1.26 16 3 C -0.15 -1.27 9.19 37.16 0.34 -0.93 16 4 C -0.11 -1.25 4.18 -26.74 -0.11 -1.36 16 5 C 0.18 2.57 2.04 -69.09 -0.14 2.43 16 6 H 0.11 1.76 4.66 -51.92 -0.24 1.52 16 7 N -0.73 -12.46 4.10 -53.16 -0.22 -12.68 16 8 C 0.09 1.96 6.56 -83.69 -0.55 1.41 16 9 C -0.16 -3.76 9.06 -39.77 -0.36 -4.12 16 10 C -0.12 -3.31 8.64 -39.26 -0.34 -3.65 16 11 C 0.08 2.14 5.57 -106.79 -0.60 1.54 16 12 C -0.47 -12.77 9.03 -37.88 -0.34 -13.11 16 13 H 0.07 1.95 7.91 -52.49 -0.41 1.54 16 14 C 0.08 1.95 5.13 -17.34 -0.09 1.86 16 15 N -0.81 -21.42 10.96 55.54 0.61 -20.81 16 16 Si 0.90 19.36 29.60 -169.99 -5.03 14.33 16 17 H -0.26 -5.59 7.11 56.52 0.40 -5.19 16 18 H -0.27 -5.80 7.11 56.52 0.40 -5.39 16 19 H -0.28 -5.83 7.11 56.52 0.40 -5.42 16 20 C -0.19 -4.70 9.74 -39.26 -0.38 -5.08 16 21 C -0.15 -3.36 9.82 -39.77 -0.39 -3.75 16 22 C 0.45 7.08 7.50 36.01 0.27 7.35 16 23 O -0.50 -9.90 17.12 -18.75 -0.32 -10.22 16 24 O -0.53 -6.43 13.23 -39.23 -0.52 -6.95 16 25 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 27 H 0.06 0.82 6.46 -51.93 -0.34 0.48 16 28 H 0.08 0.98 7.62 -51.93 -0.40 0.58 16 29 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 31 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 32 H 0.08 0.83 7.99 -51.93 -0.42 0.42 16 33 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 34 H 0.39 6.00 8.60 -40.82 -0.35 5.65 16 35 H 0.08 1.77 6.14 -52.49 -0.32 1.45 16 36 H 0.12 3.25 6.16 -52.49 -0.32 2.93 16 37 H 0.28 6.68 8.30 -40.82 -0.34 6.34 16 38 H 0.09 2.18 8.06 -52.49 -0.42 1.76 16 39 H 0.09 1.74 8.06 -52.49 -0.42 1.31 16 40 H 0.40 3.33 9.10 45.56 0.41 3.75 16 LS Contribution 332.54 15.07 5.01 5.01 Total: -1.00 -31.03 332.54 -7.99 -39.01 By element: Atomic # 1 Polarization: 17.22 SS G_CDS: -4.90 Total: 12.32 kcal Atomic # 6 Polarization: -17.39 SS G_CDS: -2.62 Total: -20.01 kcal Atomic # 7 Polarization: -33.88 SS G_CDS: 0.39 Total: -33.49 kcal Atomic # 8 Polarization: -16.33 SS G_CDS: -0.84 Total: -17.17 kcal Atomic # 14 Polarization: 19.36 SS G_CDS: -5.03 Total: 14.33 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -31.03 -7.99 -39.01 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695169184.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.427 kcal (2) G-P(sol) polarization free energy of solvation -31.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.013 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds