Wall clock time and date at job start Mon Mar 30 2020 01:30:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53007 * 109.46986 * 2 1 4 4 C 1.53001 * 109.47276 * 119.99877 * 2 1 3 5 5 C 1.52990 * 109.47301 * 65.00228 * 4 2 1 6 6 H 1.09010 * 109.47177 * 305.00348 * 5 4 2 7 7 N 1.46495 * 109.47296 * 64.99633 * 5 4 2 8 8 C 1.38860 * 120.00682 * 205.27821 * 7 5 4 9 9 C 1.39573 * 119.83599 * 359.45029 * 8 7 5 10 10 C 1.36339 * 120.15851 * 179.71645 * 9 8 7 11 11 C 1.40892 * 119.83596 * 0.55942 * 10 9 8 12 12 C 1.41132 * 120.15409 * 179.69786 * 11 10 9 13 13 H 1.08002 * 119.99881 * 204.62455 * 12 11 10 14 14 C 1.39860 * 120.00212 * 24.62077 * 12 11 10 15 15 N 1.30905 * 119.99899 * 17.96952 * 14 12 11 16 16 Si 1.86804 * 120.00112 * 197.96660 * 14 12 11 17 17 H 1.48498 * 109.47059 * 359.97438 * 16 14 12 18 18 H 1.48496 * 109.47251 * 120.00054 * 16 14 12 19 19 H 1.48500 * 109.47031 * 240.00316 * 16 14 12 20 20 C 1.40888 * 119.68907 * 359.71520 * 11 10 9 21 21 C 1.36347 * 119.83535 * 0.02562 * 20 11 10 22 22 C 1.50700 * 109.47395 * 185.00153 * 5 4 2 23 23 O 1.20831 * 119.99878 * 239.99678 * 22 5 4 24 24 O 1.34220 * 120.00037 * 59.99810 * 22 5 4 25 25 H 1.09006 * 109.47328 * 299.99846 * 1 2 3 26 26 H 1.08996 * 109.47611 * 59.99938 * 1 2 3 27 27 H 1.09001 * 109.46837 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47454 * 240.00425 * 2 1 3 29 29 H 1.08995 * 109.47207 * 179.97438 * 3 2 1 30 30 H 1.09006 * 109.46946 * 300.00517 * 3 2 1 31 31 H 1.09006 * 109.46961 * 59.99930 * 3 2 1 32 32 H 1.09002 * 109.46961 * 305.00112 * 4 2 1 33 33 H 1.09000 * 109.46785 * 185.00567 * 4 2 1 34 34 H 0.97002 * 119.99762 * 25.00609 * 7 5 4 35 35 H 1.08001 * 119.91721 * 359.97438 * 9 8 7 36 36 H 1.08002 * 120.08462 * 180.27480 * 10 9 8 37 37 H 0.97004 * 119.99851 * 180.02562 * 15 14 12 38 38 H 1.07988 * 120.08132 * 179.97438 * 20 11 10 39 39 H 1.07994 * 119.91844 * 179.97438 * 21 20 11 40 40 H 0.96701 * 117.00158 * 180.02562 * 24 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.6354 -2.1954 1.1880 6 1 0.5563 -2.2707 1.0527 7 7 2.3147 -2.8420 0.0627 8 6 1.7600 -3.9693 -0.5285 9 6 0.5606 -4.4904 -0.0405 10 6 0.0071 -5.5935 -0.6197 11 6 0.6548 -6.2146 -1.7059 12 6 0.0911 -7.3606 -2.3064 13 1 0.7224 -8.0584 -2.8364 14 6 -1.2851 -7.5927 -2.2150 15 7 -2.0943 -6.6139 -1.8977 16 14 -1.9685 -9.2995 -2.5459 17 1 -0.8546 -10.2219 -2.8830 18 1 -2.6723 -9.7941 -1.3355 19 1 -2.9217 -9.2391 -3.6830 20 6 1.8681 -5.6864 -2.1895 21 6 2.4074 -4.5795 -1.6038 22 6 2.0295 -2.8783 2.4723 23 8 2.7990 -3.8096 2.4499 24 8 1.5257 -2.4520 3.6411 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 1.8933 -0.5137 -0.8900 29 1 3.1299 1.4426 0.0005 30 1 1.6765 1.9564 -0.8900 31 1 1.6766 1.9564 0.8900 32 1 1.6054 -0.2617 2.1370 33 1 3.1263 -0.6442 1.2951 34 1 3.1502 -2.4802 -0.2721 35 1 0.0678 -4.0160 0.7953 36 1 -0.9233 -5.9931 -0.2439 37 1 -3.0488 -6.7750 -1.8339 38 1 2.3702 -6.1576 -3.0214 39 1 3.3376 -4.1737 -1.9732 40 1 1.8081 -2.9212 4.4381 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695169184.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:57 Heat of formation + Delta-G solvation = -102.153831 kcal Electronic energy + Delta-G solvation = -21602.213533 eV Core-core repulsion = 18380.165469 eV Total energy + Delta-G solvation = -3222.048064 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.47709 -39.70999 -38.13282 -37.06336 -36.00777 -34.55322 -31.65002 -31.38338 -29.47954 -27.97376 -26.17100 -25.93810 -23.27015 -22.56847 -21.48811 -20.62344 -19.19216 -19.03652 -18.17091 -17.67770 -16.91207 -16.56047 -16.37878 -15.78622 -15.63480 -14.94109 -14.62250 -14.58520 -14.26538 -14.00284 -13.75202 -13.58183 -13.29787 -12.98839 -12.90277 -12.75602 -12.67859 -12.54856 -12.45569 -12.30543 -12.02787 -11.61280 -11.55806 -11.47701 -11.44924 -11.19104 -11.03744 -10.40960 -9.42732 -8.57570 -8.25757 -6.03746 1.06410 1.16085 1.25388 1.39421 1.53016 1.55034 2.10314 2.26590 2.76979 2.86216 3.70567 3.83667 3.94575 4.00983 4.18190 4.40012 4.45044 4.49002 4.51809 4.79743 4.82720 4.89346 4.98610 4.99336 5.08707 5.10512 5.15433 5.25262 5.37966 5.42937 5.50467 5.56264 5.61570 5.66225 5.76729 5.91687 6.16577 6.34034 6.58961 6.79543 7.02343 7.06710 7.09488 7.22883 8.46685 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.021438 B = 0.004445 C = 0.004240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1305.794464 B = 6296.996342 C = 6602.836674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.092 4.092 3 C -0.141 4.141 4 C -0.103 4.103 5 C 0.170 3.830 6 H 0.108 0.892 7 N -0.719 5.719 8 C 0.114 3.886 9 C -0.170 4.170 10 C -0.145 4.145 11 C 0.039 3.961 12 C -0.506 4.506 13 H 0.068 0.932 14 C 0.033 3.967 15 N -0.839 5.839 16 Si 0.975 3.025 17 H -0.261 1.261 18 H -0.267 1.267 19 H -0.266 1.266 20 C -0.197 4.197 21 C -0.158 4.158 22 C 0.453 3.547 23 O -0.543 6.543 24 O -0.511 6.511 25 H 0.069 0.931 26 H 0.055 0.945 27 H 0.037 0.963 28 H 0.064 0.936 29 H 0.060 0.940 30 H 0.056 0.944 31 H 0.065 0.935 32 H 0.103 0.897 33 H 0.081 0.919 34 H 0.403 0.597 35 H 0.096 0.904 36 H 0.098 0.902 37 H 0.283 0.717 38 H 0.098 0.902 39 H 0.120 0.880 40 H 0.421 0.579 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.391 14.489 7.531 16.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.110 4.110 3 C -0.198 4.198 4 C -0.141 4.141 5 C 0.060 3.940 6 H 0.126 0.874 7 N -0.353 5.353 8 C 0.016 3.984 9 C -0.192 4.192 10 C -0.165 4.165 11 C 0.036 3.964 12 C -0.537 4.537 13 H 0.086 0.914 14 C -0.179 4.179 15 N -0.467 5.467 16 Si 0.797 3.203 17 H -0.185 1.185 18 H -0.192 1.192 19 H -0.191 1.191 20 C -0.217 4.217 21 C -0.179 4.179 22 C 0.294 3.706 23 O -0.432 6.432 24 O -0.323 6.323 25 H 0.088 0.912 26 H 0.074 0.926 27 H 0.056 0.944 28 H 0.082 0.918 29 H 0.079 0.921 30 H 0.076 0.924 31 H 0.084 0.916 32 H 0.121 0.879 33 H 0.099 0.901 34 H 0.239 0.761 35 H 0.114 0.886 36 H 0.116 0.884 37 H 0.093 0.907 38 H 0.116 0.884 39 H 0.138 0.862 40 H 0.282 0.718 Dipole moment (debyes) X Y Z Total from point charges 4.108 14.526 7.322 16.778 hybrid contribution -0.022 -1.412 0.222 1.430 sum 4.085 13.114 7.544 15.671 Atomic orbital electron populations 1.21908 0.95451 1.01112 1.02432 1.21048 0.95852 0.96878 0.97241 1.21792 1.01210 0.94431 1.02406 1.21857 1.02464 0.89026 1.00728 1.20504 0.99562 0.93371 0.80563 0.87427 1.43588 1.27621 1.30102 1.34030 1.17327 0.94106 0.90909 0.96098 1.20150 0.97042 0.99687 1.02293 1.20826 1.00710 0.97814 0.97187 1.17824 0.92681 0.93797 0.92084 1.19626 0.93464 1.07583 1.33015 0.91421 1.26600 0.96962 1.01692 0.92622 1.69920 1.05056 1.33578 1.38176 0.85265 0.78461 0.77853 0.78715 1.18519 1.19192 1.19111 1.20765 0.99623 0.99052 1.02260 1.20089 1.00716 0.98412 0.98723 1.25265 0.76899 0.81452 0.86997 1.90715 1.35378 1.29325 1.87800 1.84512 1.68536 1.61488 1.17804 0.91196 0.92557 0.94353 0.91764 0.92096 0.92442 0.91640 0.87852 0.90070 0.76147 0.88586 0.88396 0.90700 0.88362 0.86223 0.71840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.09 8.95 71.98 0.64 -2.44 16 2 C -0.09 -1.71 2.86 -10.79 -0.03 -1.74 16 3 C -0.14 -1.99 9.19 71.98 0.66 -1.32 16 4 C -0.10 -1.93 4.18 30.59 0.13 -1.80 16 5 C 0.17 4.64 2.04 44.24 0.09 4.73 16 6 H 0.11 3.18 4.66 -2.38 -0.01 3.17 16 7 N -0.72 -23.39 4.10 -322.10 -1.32 -24.71 16 8 C 0.11 4.90 6.56 38.67 0.25 5.15 16 9 C -0.17 -8.14 9.06 22.15 0.20 -7.94 16 10 C -0.15 -8.03 8.64 22.48 0.19 -7.83 16 11 C 0.04 2.21 5.57 -21.27 -0.12 2.09 16 12 C -0.51 -28.94 9.03 23.37 0.21 -28.73 16 13 H 0.07 3.77 7.91 -2.91 -0.02 3.75 16 14 C 0.03 1.78 5.13 85.22 0.44 2.22 16 15 N -0.84 -46.14 10.96 21.81 0.24 -45.90 16 16 Si 0.98 40.64 29.60 68.60 2.03 42.67 16 17 H -0.26 -10.72 7.11 99.48 0.71 -10.01 16 18 H -0.27 -10.71 7.11 99.48 0.71 -10.00 16 19 H -0.27 -10.54 7.11 99.48 0.71 -9.83 16 20 C -0.20 -10.05 9.74 22.48 0.22 -9.83 16 21 C -0.16 -7.03 9.82 22.15 0.22 -6.82 16 22 C 0.45 13.46 7.50 71.24 0.53 13.99 16 23 O -0.54 -20.94 17.12 21.95 0.38 -20.57 16 24 O -0.51 -11.01 13.23 -51.32 -0.68 -11.69 16 25 H 0.07 1.17 8.14 -2.38 -0.02 1.15 16 26 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 27 H 0.04 0.96 6.46 -2.39 -0.02 0.94 16 28 H 0.06 1.42 7.62 -2.39 -0.02 1.40 16 29 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 30 H 0.06 0.80 8.14 -2.38 -0.02 0.78 16 31 H 0.06 0.79 8.14 -2.38 -0.02 0.77 16 32 H 0.10 1.61 7.99 -2.39 -0.02 1.59 16 33 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 34 H 0.40 11.38 8.60 -92.71 -0.80 10.58 16 35 H 0.10 4.20 6.14 -2.91 -0.02 4.18 16 36 H 0.10 5.70 6.16 -2.91 -0.02 5.68 16 37 H 0.28 14.07 8.30 -92.71 -0.77 13.30 16 38 H 0.10 4.74 8.06 -2.92 -0.02 4.72 16 39 H 0.12 4.50 8.06 -2.91 -0.02 4.47 16 40 H 0.42 5.78 9.10 -74.06 -0.67 5.11 16 Total: -1.00 -69.40 332.54 3.88 -65.51 By element: Atomic # 1 Polarization: 35.35 SS G_CDS: -0.41 Total: 34.95 kcal Atomic # 6 Polarization: -43.91 SS G_CDS: 3.64 Total: -40.27 kcal Atomic # 7 Polarization: -69.53 SS G_CDS: -1.08 Total: -70.61 kcal Atomic # 8 Polarization: -31.95 SS G_CDS: -0.30 Total: -32.25 kcal Atomic # 14 Polarization: 40.64 SS G_CDS: 2.03 Total: 42.67 kcal Total: -69.40 3.88 -65.51 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695169184.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.640 kcal (2) G-P(sol) polarization free energy of solvation -69.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.514 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds