Wall clock time and date at job start Mon Mar 30 2020 01:31:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.47296 * 2 1 4 4 C 1.53004 * 109.46626 * 119.99466 * 2 1 3 5 5 C 1.52999 * 109.47006 * 174.99859 * 4 2 1 6 6 H 1.09009 * 109.46982 * 54.99774 * 5 4 2 7 7 N 1.46500 * 109.47422 * 295.00474 * 5 4 2 8 8 C 1.38855 * 120.00687 * 154.99968 * 7 5 4 9 9 C 1.39568 * 119.83651 * 0.26242 * 8 7 5 10 10 C 1.36344 * 120.15871 * 180.28165 * 9 8 7 11 11 C 1.40887 * 119.83460 * 359.47453 * 10 9 8 12 12 C 1.41138 * 120.15542 * 180.27715 * 11 10 9 13 13 H 1.07996 * 119.99962 * 335.08623 * 12 11 10 14 14 C 1.39865 * 119.99771 * 155.08932 * 12 11 10 15 15 N 1.30901 * 120.00243 * 342.12506 * 14 12 11 16 16 Si 1.86810 * 119.99789 * 162.12704 * 14 12 11 17 17 H 1.48504 * 109.46870 * 94.65185 * 16 14 12 18 18 H 1.48501 * 109.46827 * 214.64898 * 16 14 12 19 19 H 1.48497 * 109.46864 * 334.65140 * 16 14 12 20 20 C 1.40885 * 119.68928 * 0.25720 * 11 10 9 21 21 C 1.36341 * 119.83934 * 359.97438 * 20 11 10 22 22 C 1.50699 * 109.47610 * 174.99957 * 5 4 2 23 23 O 1.20823 * 119.99779 * 119.99852 * 22 5 4 24 24 O 1.34221 * 119.99948 * 300.00608 * 22 5 4 25 25 H 1.09002 * 109.47208 * 300.00536 * 1 2 3 26 26 H 1.08997 * 109.46945 * 60.00379 * 1 2 3 27 27 H 1.08998 * 109.47465 * 180.02562 * 1 2 3 28 28 H 1.08994 * 109.46932 * 239.99500 * 2 1 3 29 29 H 1.09002 * 109.47429 * 59.99600 * 3 2 1 30 30 H 1.08996 * 109.47178 * 179.97438 * 3 2 1 31 31 H 1.09007 * 109.46798 * 299.99693 * 3 2 1 32 32 H 1.09004 * 109.47186 * 55.00201 * 4 2 1 33 33 H 1.08994 * 109.47641 * 294.99661 * 4 2 1 34 34 H 0.97006 * 119.99894 * 334.99395 * 7 5 4 35 35 H 1.07997 * 119.92433 * 0.03507 * 9 8 7 36 36 H 1.07993 * 120.08488 * 179.76064 * 10 9 8 37 37 H 0.97004 * 119.99917 * 179.97438 * 15 14 12 38 38 H 1.08002 * 120.08247 * 180.02562 * 20 11 10 39 39 H 1.07994 * 119.92195 * 179.97438 * 21 20 11 40 40 H 0.96703 * 117.00180 * 179.97438 * 24 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2494 5 6 3.5647 -0.8311 1.1882 6 1 3.9953 0.1612 1.0528 7 7 3.9479 -1.6872 0.0629 8 6 5.1979 -1.5439 -0.5246 9 6 6.0887 -0.5867 -0.0367 10 6 7.3156 -0.4364 -0.6123 11 6 7.6873 -1.2578 -1.6949 12 6 8.9578 -1.1120 -2.2920 13 1 9.4801 -0.1690 -2.2266 14 6 9.5403 -2.1888 -2.9683 15 7 9.1018 -3.4050 -2.7633 16 14 10.9442 -1.8912 -4.1643 17 1 12.2398 -2.0798 -3.4634 18 1 10.8465 -2.8533 -5.2914 19 1 10.8622 -0.5044 -4.6886 20 6 6.7849 -2.2257 -2.1784 21 6 5.5596 -2.3617 -1.5962 22 6 4.0772 -1.4301 2.4725 23 8 4.6987 -2.4660 2.4501 24 8 3.8432 -0.8130 3.6412 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 1.8933 -0.5139 -0.8899 29 1 1.6767 1.9564 0.8899 30 1 3.1300 1.4425 0.0005 31 1 1.6767 1.9563 -0.8901 32 1 1.6052 -1.7197 1.2953 33 1 1.7516 -0.1582 2.1370 34 1 3.3284 -2.3544 -0.2719 35 1 5.8042 0.0392 0.7961 36 1 8.0025 0.3073 -0.2363 37 1 9.5056 -4.1517 -3.2327 38 1 7.0634 -2.8591 -3.0077 39 1 4.8667 -3.1029 -1.9660 40 1 4.1914 -1.2356 4.4383 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695169186.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:31:01 Heat of formation + Delta-G solvation = -83.200884 kcal Electronic energy + Delta-G solvation = -21523.781241 eV Core-core repulsion = 18302.555039 eV Total energy + Delta-G solvation = -3221.226203 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.20410 -38.07029 -36.90600 -35.85220 -34.44920 -32.86808 -30.31806 -29.30386 -27.89057 -27.21646 -24.94527 -24.27368 -21.69646 -20.67312 -20.27821 -19.54969 -17.82280 -17.21615 -16.58370 -16.42354 -15.37314 -15.18794 -14.89965 -14.74377 -14.04624 -13.85107 -13.31592 -12.98520 -12.75884 -12.48112 -12.30142 -12.20464 -12.02700 -11.71094 -11.66570 -11.43553 -11.28124 -11.05767 -10.98097 -10.87135 -10.68443 -10.62511 -10.52011 -10.15415 -9.68535 -9.31172 -9.28484 -8.63472 -7.49239 -6.65964 -6.44607 -4.04722 2.50475 2.87128 3.10180 3.13811 3.15370 3.21256 3.45102 4.05561 4.13985 4.67255 4.76836 4.82012 4.86621 5.17385 5.35731 5.49038 5.55275 5.66728 5.68953 5.78701 5.82310 5.87995 5.91318 6.10652 6.21232 6.28367 6.31666 6.35886 6.71940 6.80278 7.03100 7.18138 7.28846 7.53515 7.64725 7.76497 8.14245 8.16247 8.32102 8.42157 8.58973 8.77229 9.05626 9.13698 10.37247 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.024469 B = 0.004213 C = 0.003931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1144.024532 B = 6644.492317 C = 7121.447155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.094 4.094 3 C -0.150 4.150 4 C -0.114 4.114 5 C 0.176 3.824 6 H 0.114 0.886 7 N -0.727 5.727 8 C 0.090 3.910 9 C -0.154 4.154 10 C -0.189 4.189 11 C 0.079 3.921 12 C -0.467 4.467 13 H 0.073 0.927 14 C 0.075 3.925 15 N -0.805 5.805 16 Si 0.902 3.098 17 H -0.273 1.273 18 H -0.277 1.277 19 H -0.262 1.262 20 C -0.124 4.124 21 C -0.153 4.153 22 C 0.444 3.556 23 O -0.494 6.494 24 O -0.527 6.527 25 H 0.053 0.947 26 H 0.055 0.945 27 H 0.052 0.948 28 H 0.081 0.919 29 H 0.053 0.947 30 H 0.061 0.939 31 H 0.054 0.946 32 H 0.068 0.932 33 H 0.084 0.916 34 H 0.391 0.609 35 H 0.081 0.919 36 H 0.091 0.909 37 H 0.277 0.723 38 H 0.119 0.881 39 H 0.088 0.912 40 H 0.400 0.600 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.020 5.430 6.109 16.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.113 4.113 3 C -0.208 4.208 4 C -0.152 4.152 5 C 0.065 3.935 6 H 0.131 0.869 7 N -0.362 5.362 8 C -0.006 4.006 9 C -0.176 4.176 10 C -0.210 4.210 11 C 0.077 3.923 12 C -0.498 4.498 13 H 0.091 0.909 14 C -0.140 4.140 15 N -0.432 5.432 16 Si 0.727 3.273 17 H -0.198 1.198 18 H -0.203 1.203 19 H -0.186 1.186 20 C -0.144 4.144 21 C -0.175 4.175 22 C 0.282 3.718 23 O -0.379 6.379 24 O -0.338 6.338 25 H 0.072 0.928 26 H 0.074 0.926 27 H 0.072 0.928 28 H 0.099 0.901 29 H 0.072 0.928 30 H 0.080 0.920 31 H 0.073 0.927 32 H 0.087 0.913 33 H 0.102 0.898 34 H 0.225 0.775 35 H 0.099 0.901 36 H 0.109 0.891 37 H 0.087 0.913 38 H 0.137 0.863 39 H 0.106 0.894 40 H 0.258 0.742 Dipole moment (debyes) X Y Z Total from point charges -13.885 5.205 5.768 15.911 hybrid contribution 0.877 -0.689 0.105 1.121 sum -13.008 4.515 5.874 14.970 Atomic orbital electron populations 1.21836 0.95277 1.01555 1.01672 1.21082 0.95257 0.96691 0.98240 1.21897 1.01788 0.95575 1.01498 1.21861 0.92023 1.01665 0.99697 1.20256 0.95462 0.95952 0.81814 0.86910 1.43653 1.16540 1.42413 1.33641 1.17250 0.86003 0.99874 0.97504 1.19800 0.95549 1.00641 1.01611 1.20525 0.96254 1.04811 0.99387 1.17496 0.92975 0.91504 0.90372 1.19378 1.01957 0.98057 1.30386 0.90892 1.25807 0.97831 0.94488 0.95918 1.69864 1.38829 0.99253 1.35271 0.86407 0.81102 0.79392 0.80375 1.19850 1.20253 1.18629 1.20910 0.91595 1.01101 1.00813 1.19998 0.98024 1.00627 0.98807 1.25306 0.77201 0.83365 0.85919 1.90735 1.36612 1.23599 1.86963 1.84577 1.74957 1.56474 1.17835 0.92821 0.92626 0.92848 0.90056 0.92829 0.91993 0.92683 0.91317 0.89788 0.77479 0.90098 0.89105 0.91272 0.86301 0.89394 0.74219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.22 9.19 37.16 0.34 -0.88 16 2 C -0.09 -0.95 2.86 -90.62 -0.26 -1.21 16 3 C -0.15 -1.53 8.95 37.16 0.33 -1.20 16 4 C -0.11 -1.22 4.19 -26.73 -0.11 -1.33 16 5 C 0.18 2.53 2.04 -69.08 -0.14 2.39 16 6 H 0.11 1.65 4.66 -51.92 -0.24 1.41 16 7 N -0.73 -12.47 4.10 -53.15 -0.22 -12.69 16 8 C 0.09 1.95 6.55 -83.69 -0.55 1.41 16 9 C -0.15 -3.52 9.06 -39.77 -0.36 -3.88 16 10 C -0.19 -4.78 9.74 -39.26 -0.38 -5.16 16 11 C 0.08 2.17 5.57 -106.79 -0.59 1.57 16 12 C -0.47 -12.81 9.03 -37.87 -0.34 -13.15 16 13 H 0.07 1.93 7.91 -52.49 -0.41 1.51 16 14 C 0.08 1.96 5.13 -17.34 -0.09 1.87 16 15 N -0.81 -21.69 10.98 55.54 0.61 -21.08 16 16 Si 0.90 19.34 29.60 -169.99 -5.03 14.31 16 17 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 18 H -0.28 -5.81 7.11 56.52 0.40 -5.40 16 19 H -0.26 -5.56 7.11 56.52 0.40 -5.16 16 20 C -0.12 -3.29 8.63 -39.26 -0.34 -3.62 16 21 C -0.15 -3.60 9.82 -39.77 -0.39 -3.99 16 22 C 0.44 7.04 7.49 36.00 0.27 7.31 16 23 O -0.49 -10.04 17.11 -18.75 -0.32 -10.36 16 24 O -0.53 -6.36 13.23 -39.23 -0.52 -6.88 16 25 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 26 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 27 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 28 H 0.08 0.95 7.62 -51.93 -0.40 0.55 16 29 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.06 0.73 6.46 -51.93 -0.34 0.39 16 31 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.08 0.80 7.99 -51.93 -0.42 0.39 16 34 H 0.39 6.11 8.60 -40.82 -0.35 5.76 16 35 H 0.08 1.66 6.14 -52.49 -0.32 1.33 16 36 H 0.09 2.17 8.06 -52.49 -0.42 1.75 16 37 H 0.28 6.81 8.30 -40.82 -0.34 6.47 16 38 H 0.12 3.25 6.18 -52.49 -0.32 2.92 16 39 H 0.09 1.86 8.06 -52.49 -0.42 1.44 16 40 H 0.40 3.31 9.10 45.56 0.41 3.73 16 LS Contribution 332.54 15.07 5.01 5.01 Total: -1.00 -31.42 332.54 -7.99 -39.41 By element: Atomic # 1 Polarization: 17.08 SS G_CDS: -4.90 Total: 12.17 kcal Atomic # 6 Polarization: -17.28 SS G_CDS: -2.61 Total: -19.89 kcal Atomic # 7 Polarization: -34.16 SS G_CDS: 0.39 Total: -33.77 kcal Atomic # 8 Polarization: -16.40 SS G_CDS: -0.84 Total: -17.24 kcal Atomic # 14 Polarization: 19.34 SS G_CDS: -5.03 Total: 14.31 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -31.42 -7.99 -39.41 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695169186.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.795 kcal (2) G-P(sol) polarization free energy of solvation -31.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.406 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.201 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds