Wall clock time and date at job start Mon Mar 30 2020 01:31:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.47296 * 2 1 4 4 C 1.53004 * 109.46626 * 119.99466 * 2 1 3 5 5 C 1.52999 * 109.47006 * 174.99859 * 4 2 1 6 6 H 1.09009 * 109.46982 * 54.99774 * 5 4 2 7 7 N 1.46500 * 109.47422 * 295.00474 * 5 4 2 8 8 C 1.38855 * 120.00687 * 154.99968 * 7 5 4 9 9 C 1.39568 * 119.83651 * 0.26242 * 8 7 5 10 10 C 1.36344 * 120.15871 * 180.28165 * 9 8 7 11 11 C 1.40887 * 119.83460 * 359.47453 * 10 9 8 12 12 C 1.41138 * 120.15542 * 180.27715 * 11 10 9 13 13 H 1.07996 * 119.99962 * 335.08623 * 12 11 10 14 14 C 1.39865 * 119.99771 * 155.08932 * 12 11 10 15 15 N 1.30901 * 120.00243 * 342.12506 * 14 12 11 16 16 Si 1.86810 * 119.99789 * 162.12704 * 14 12 11 17 17 H 1.48504 * 109.46870 * 94.65185 * 16 14 12 18 18 H 1.48501 * 109.46827 * 214.64898 * 16 14 12 19 19 H 1.48497 * 109.46864 * 334.65140 * 16 14 12 20 20 C 1.40885 * 119.68928 * 0.25720 * 11 10 9 21 21 C 1.36341 * 119.83934 * 359.97438 * 20 11 10 22 22 C 1.50699 * 109.47610 * 174.99957 * 5 4 2 23 23 O 1.20823 * 119.99779 * 119.99852 * 22 5 4 24 24 O 1.34221 * 119.99948 * 300.00608 * 22 5 4 25 25 H 1.09002 * 109.47208 * 300.00536 * 1 2 3 26 26 H 1.08997 * 109.46945 * 60.00379 * 1 2 3 27 27 H 1.08998 * 109.47465 * 180.02562 * 1 2 3 28 28 H 1.08994 * 109.46932 * 239.99500 * 2 1 3 29 29 H 1.09002 * 109.47429 * 59.99600 * 3 2 1 30 30 H 1.08996 * 109.47178 * 179.97438 * 3 2 1 31 31 H 1.09007 * 109.46798 * 299.99693 * 3 2 1 32 32 H 1.09004 * 109.47186 * 55.00201 * 4 2 1 33 33 H 1.08994 * 109.47641 * 294.99661 * 4 2 1 34 34 H 0.97006 * 119.99894 * 334.99395 * 7 5 4 35 35 H 1.07997 * 119.92433 * 0.03507 * 9 8 7 36 36 H 1.07993 * 120.08488 * 179.76064 * 10 9 8 37 37 H 0.97004 * 119.99917 * 179.97438 * 15 14 12 38 38 H 1.08002 * 120.08247 * 180.02562 * 20 11 10 39 39 H 1.07994 * 119.92195 * 179.97438 * 21 20 11 40 40 H 0.96703 * 117.00180 * 179.97438 * 24 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2494 5 6 3.5647 -0.8311 1.1882 6 1 3.9953 0.1612 1.0528 7 7 3.9479 -1.6872 0.0629 8 6 5.1979 -1.5439 -0.5246 9 6 6.0887 -0.5867 -0.0367 10 6 7.3156 -0.4364 -0.6123 11 6 7.6873 -1.2578 -1.6949 12 6 8.9578 -1.1120 -2.2920 13 1 9.4801 -0.1690 -2.2266 14 6 9.5403 -2.1888 -2.9683 15 7 9.1018 -3.4050 -2.7633 16 14 10.9442 -1.8912 -4.1643 17 1 12.2398 -2.0798 -3.4634 18 1 10.8465 -2.8533 -5.2914 19 1 10.8622 -0.5044 -4.6886 20 6 6.7849 -2.2257 -2.1784 21 6 5.5596 -2.3617 -1.5962 22 6 4.0772 -1.4301 2.4725 23 8 4.6987 -2.4660 2.4501 24 8 3.8432 -0.8130 3.6412 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 1.8933 -0.5139 -0.8899 29 1 1.6767 1.9564 0.8899 30 1 3.1300 1.4425 0.0005 31 1 1.6767 1.9563 -0.8901 32 1 1.6052 -1.7197 1.2953 33 1 1.7516 -0.1582 2.1370 34 1 3.3284 -2.3544 -0.2719 35 1 5.8042 0.0392 0.7961 36 1 8.0025 0.3073 -0.2363 37 1 9.5056 -4.1517 -3.2327 38 1 7.0634 -2.8591 -3.0077 39 1 4.8667 -3.1029 -1.9660 40 1 4.1914 -1.2356 4.4383 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695169186.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:31:00 Heat of formation + Delta-G solvation = -102.310282 kcal Electronic energy + Delta-G solvation = -21524.609887 eV Core-core repulsion = 18302.555039 eV Total energy + Delta-G solvation = -3222.054848 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.47626 -39.70989 -38.12826 -37.06013 -36.00697 -34.52961 -31.90227 -31.09805 -29.53215 -27.95642 -26.16345 -25.94772 -23.30849 -22.41742 -21.58242 -20.66094 -19.18513 -18.99204 -18.05333 -17.70311 -17.08592 -16.55969 -16.27189 -15.78561 -15.64311 -14.92887 -14.66855 -14.54363 -14.25306 -13.93265 -13.76716 -13.61554 -13.22469 -13.04917 -12.93303 -12.72508 -12.67810 -12.54846 -12.44674 -12.30848 -12.01137 -11.62274 -11.51334 -11.46484 -11.44120 -11.20541 -11.04885 -10.41034 -9.42625 -8.57627 -8.25353 -6.04146 1.07482 1.15201 1.26400 1.39776 1.51739 1.57069 2.10716 2.27101 2.78283 2.84794 3.71074 3.82593 3.95530 4.01707 4.19068 4.41543 4.42640 4.49935 4.51080 4.79637 4.83953 4.91314 4.98720 4.99923 5.11789 5.13478 5.15839 5.27451 5.37824 5.39180 5.52229 5.57633 5.64230 5.69623 5.72424 5.87938 6.16230 6.36852 6.59732 6.79723 7.00961 7.06615 7.09211 7.22053 8.47017 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.024469 B = 0.004213 C = 0.003931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1144.024532 B = 6644.492317 C = 7121.447155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.092 4.092 3 C -0.151 4.151 4 C -0.104 4.104 5 C 0.171 3.829 6 H 0.115 0.885 7 N -0.720 5.720 8 C 0.115 3.885 9 C -0.163 4.163 10 C -0.200 4.200 11 C 0.040 3.960 12 C -0.506 4.506 13 H 0.069 0.931 14 C 0.032 3.968 15 N -0.842 5.842 16 Si 0.978 3.022 17 H -0.266 1.266 18 H -0.267 1.267 19 H -0.259 1.259 20 C -0.142 4.142 21 C -0.167 4.167 22 C 0.452 3.548 23 O -0.545 6.545 24 O -0.510 6.510 25 H 0.065 0.935 26 H 0.057 0.943 27 H 0.057 0.943 28 H 0.063 0.937 29 H 0.069 0.931 30 H 0.042 0.958 31 H 0.056 0.944 32 H 0.077 0.923 33 H 0.105 0.895 34 H 0.401 0.599 35 H 0.106 0.894 36 H 0.095 0.905 37 H 0.283 0.717 38 H 0.101 0.899 39 H 0.109 0.891 40 H 0.420 0.580 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.820 6.260 7.092 18.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.111 4.111 3 C -0.208 4.208 4 C -0.141 4.141 5 C 0.061 3.939 6 H 0.133 0.867 7 N -0.354 5.354 8 C 0.017 3.983 9 C -0.185 4.185 10 C -0.220 4.220 11 C 0.037 3.963 12 C -0.537 4.537 13 H 0.087 0.913 14 C -0.180 4.180 15 N -0.470 5.470 16 Si 0.799 3.201 17 H -0.191 1.191 18 H -0.192 1.192 19 H -0.183 1.183 20 C -0.162 4.162 21 C -0.188 4.188 22 C 0.292 3.708 23 O -0.435 6.435 24 O -0.323 6.323 25 H 0.084 0.916 26 H 0.076 0.924 27 H 0.076 0.924 28 H 0.082 0.918 29 H 0.088 0.912 30 H 0.061 0.939 31 H 0.075 0.925 32 H 0.095 0.905 33 H 0.123 0.877 34 H 0.236 0.764 35 H 0.124 0.876 36 H 0.113 0.887 37 H 0.093 0.907 38 H 0.119 0.881 39 H 0.127 0.873 40 H 0.281 0.719 Dipole moment (debyes) X Y Z Total from point charges -15.745 6.058 6.805 18.191 hybrid contribution 1.227 -0.883 0.000 1.512 sum -14.518 5.175 6.806 16.848 Atomic orbital electron populations 1.21794 0.93556 1.02137 1.02434 1.21051 0.96629 0.96266 0.97141 1.21906 1.00522 0.95912 1.02485 1.21862 0.88779 1.02656 1.00853 1.20548 0.98101 0.94935 0.80289 0.86736 1.43652 1.14793 1.42800 1.34194 1.17317 0.87227 0.97812 0.95978 1.20027 0.94937 1.01282 1.02206 1.20726 0.97452 1.04672 0.99158 1.17815 0.93677 0.92964 0.91808 1.19613 1.02782 0.98589 1.32762 0.91295 1.26640 1.00468 0.93800 0.97066 1.69930 1.40571 1.00103 1.36381 0.85273 0.77558 0.79367 0.77916 1.19130 1.19194 1.18313 1.20858 0.92889 1.01363 1.01126 1.20215 0.97610 1.01582 0.99427 1.25339 0.75915 0.82425 0.87097 1.90738 1.39038 1.25877 1.87814 1.84507 1.74290 1.55687 1.17772 0.91596 0.92386 0.92387 0.91828 0.91186 0.93891 0.92478 0.90480 0.87703 0.76384 0.87577 0.88701 0.90706 0.88116 0.87302 0.71865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.91 9.19 71.98 0.66 -1.25 16 2 C -0.09 -1.62 2.86 -10.79 -0.03 -1.65 16 3 C -0.15 -2.71 8.95 71.98 0.64 -2.07 16 4 C -0.10 -1.87 4.19 30.60 0.13 -1.74 16 5 C 0.17 4.49 2.04 44.24 0.09 4.58 16 6 H 0.12 3.06 4.66 -2.38 -0.01 3.05 16 7 N -0.72 -23.50 4.10 -322.08 -1.32 -24.83 16 8 C 0.12 4.95 6.55 38.67 0.25 5.21 16 9 C -0.16 -7.36 9.06 22.15 0.20 -7.16 16 10 C -0.20 -10.31 9.74 22.48 0.22 -10.09 16 11 C 0.04 2.28 5.57 -21.27 -0.12 2.16 16 12 C -0.51 -28.95 9.03 23.38 0.21 -28.74 16 13 H 0.07 3.81 7.91 -2.91 -0.02 3.79 16 14 C 0.03 1.73 5.13 85.23 0.44 2.16 16 15 N -0.84 -46.95 10.98 21.82 0.24 -46.71 16 16 Si 0.98 40.59 29.60 68.60 2.03 42.62 16 17 H -0.27 -10.68 7.11 99.48 0.71 -9.97 16 18 H -0.27 -10.55 7.11 99.48 0.71 -9.84 16 19 H -0.26 -10.51 7.11 99.48 0.71 -9.80 16 20 C -0.14 -7.81 8.63 22.48 0.19 -7.62 16 21 C -0.17 -7.92 9.82 22.15 0.22 -7.70 16 22 C 0.45 13.21 7.49 71.24 0.53 13.75 16 23 O -0.55 -21.42 17.11 21.97 0.38 -21.05 16 24 O -0.51 -10.57 13.23 -51.33 -0.68 -11.25 16 25 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 26 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 27 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 28 H 0.06 1.35 7.62 -2.39 -0.02 1.33 16 29 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 30 H 0.04 0.93 6.46 -2.39 -0.02 0.91 16 31 H 0.06 0.99 8.14 -2.38 -0.02 0.97 16 32 H 0.08 1.31 8.14 -2.38 -0.02 1.29 16 33 H 0.10 1.53 7.99 -2.39 -0.02 1.51 16 34 H 0.40 11.76 8.60 -92.70 -0.80 10.96 16 35 H 0.11 4.18 6.14 -2.91 -0.02 4.17 16 36 H 0.09 4.65 8.06 -2.91 -0.02 4.63 16 37 H 0.28 14.32 8.30 -92.71 -0.77 13.55 16 38 H 0.10 5.80 6.18 -2.91 -0.02 5.78 16 39 H 0.11 4.59 8.06 -2.91 -0.02 4.57 16 40 H 0.42 5.58 9.10 -74.05 -0.67 4.90 16 Total: -1.00 -70.24 332.54 3.88 -66.36 By element: Atomic # 1 Polarization: 35.41 SS G_CDS: -0.41 Total: 35.01 kcal Atomic # 6 Polarization: -43.80 SS G_CDS: 3.64 Total: -40.16 kcal Atomic # 7 Polarization: -70.45 SS G_CDS: -1.08 Total: -71.53 kcal Atomic # 8 Polarization: -32.00 SS G_CDS: -0.30 Total: -32.30 kcal Atomic # 14 Polarization: 40.59 SS G_CDS: 2.03 Total: 42.62 kcal Total: -70.24 3.88 -66.36 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695169186.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.946 kcal (2) G-P(sol) polarization free energy of solvation -70.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.364 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds