Wall clock time and date at job start Mon Mar 30 2020 02:50:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52996 * 109.46942 * 2 1 4 4 H 1.09001 * 110.56827 * 52.31843 * 3 2 1 5 5 C 1.54803 * 110.61030 * 289.51421 * 3 2 1 6 6 O 1.44425 * 104.85937 * 217.51152 * 5 3 2 7 7 C 1.44430 * 105.27221 * 40.46049 * 6 5 3 8 8 C 1.54477 * 104.80397 * 319.48887 * 7 6 5 9 9 H 1.09004 * 110.51114 * 142.75777 * 8 7 6 10 10 N 1.46500 * 110.51076 * 265.33432 * 8 7 6 11 11 C 1.39787 * 119.99536 * 271.69092 * 10 8 7 12 12 C 1.38948 * 120.00043 * 180.02562 * 11 10 8 13 13 C 1.38014 * 119.99415 * 180.02562 * 12 11 10 14 14 C 1.38909 * 120.00330 * 0.02562 * 13 12 11 15 15 O 1.35788 * 119.98973 * 179.97438 * 14 13 12 16 16 C 1.34804 * 117.00614 * 5.53492 * 15 14 13 17 17 H 1.07998 * 120.00136 * 354.94989 * 16 15 14 18 18 C 1.38627 * 120.00401 * 174.94819 * 16 15 14 19 19 N 1.31582 * 119.99733 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 120.00141 * 179.72807 * 18 16 15 21 21 H 1.48499 * 109.46990 * 89.99988 * 20 18 16 22 22 H 1.48499 * 109.46884 * 209.99535 * 20 18 16 23 23 H 1.48497 * 109.47292 * 329.99835 * 20 18 16 24 24 C 1.38902 * 120.00911 * 0.24980 * 14 13 12 25 25 C 1.38006 * 120.00457 * 359.45697 * 24 14 13 26 26 H 1.08997 * 109.47372 * 300.00139 * 1 2 3 27 27 H 1.09003 * 109.47173 * 60.00267 * 1 2 3 28 28 H 1.09002 * 109.47025 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.46897 * 240.00100 * 2 1 3 30 30 H 1.08996 * 109.46832 * 119.99739 * 2 1 3 31 31 H 1.09000 * 110.38877 * 98.64124 * 5 3 2 32 32 H 1.09001 * 110.39858 * 336.38822 * 5 3 2 33 33 H 1.08993 * 110.37233 * 200.65658 * 7 6 5 34 34 H 1.08998 * 110.36978 * 78.31890 * 7 6 5 35 35 H 0.96997 * 119.99931 * 91.70122 * 10 8 7 36 36 H 1.08000 * 120.00721 * 0.02562 * 12 11 10 37 37 H 1.07993 * 119.99947 * 180.02562 * 13 12 11 38 38 H 0.96997 * 119.99735 * 180.02562 * 19 18 16 39 39 H 1.08000 * 119.99414 * 179.72524 * 24 14 13 40 40 H 1.08005 * 119.99665 * 180.26978 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5795 2.0114 0.8077 5 6 1.7653 2.1176 -1.3657 6 8 2.9231 2.9458 -1.6090 7 6 4.0528 2.1574 -1.1751 8 6 3.5796 1.4724 0.1261 9 1 3.9772 0.4596 0.1909 10 7 3.9837 2.2570 1.2954 11 6 5.2320 2.0393 1.8857 12 6 5.6151 2.7830 2.9951 13 6 6.8478 2.5682 3.5775 14 6 7.7056 1.6091 3.0543 15 8 8.9185 1.3984 3.6272 16 6 9.1825 2.0696 4.7660 17 1 8.4787 2.7992 5.1383 18 6 10.3574 1.8233 5.4594 19 7 11.2147 0.9340 5.0062 20 14 10.7266 2.7589 7.0335 21 1 10.1774 2.0121 8.1936 22 1 12.1962 2.9047 7.1895 23 1 10.0998 4.1035 6.9688 24 6 7.3251 0.8695 1.9418 25 6 6.0901 1.0797 1.3628 26 1 -0.3634 0.5138 0.8899 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 0.8651 2.7300 -1.3124 32 1 1.6657 1.3653 -2.1482 33 1 4.9099 2.8004 -0.9754 34 1 4.3051 1.4100 -1.9273 35 1 3.3850 2.9274 1.6601 36 1 4.9484 3.5290 3.4017 37 1 7.1455 3.1459 4.4400 38 1 12.0365 0.7614 5.4915 39 1 7.9940 0.1269 1.5325 40 1 5.7926 0.5015 0.5004 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000699438287.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:13 Heat of formation + Delta-G solvation = -48.330247 kcal Electronic energy + Delta-G solvation = -21008.767876 eV Core-core repulsion = 17789.053778 eV Total energy + Delta-G solvation = -3219.714098 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.08968 -38.83080 -36.83695 -34.95346 -33.84232 -32.06131 -30.35114 -29.54027 -28.33585 -26.84604 -25.06186 -24.12290 -22.50674 -21.91466 -20.53621 -20.35587 -17.84619 -17.12463 -16.68752 -16.23985 -15.90242 -15.65661 -14.88892 -14.43771 -14.22954 -13.90785 -13.66063 -13.58516 -13.44020 -12.93621 -12.66134 -12.45457 -12.41360 -12.20087 -11.92102 -11.55154 -11.47505 -11.27263 -11.10251 -10.99507 -10.89992 -10.82563 -10.54703 -10.35430 -10.01866 -9.23088 -9.15117 -8.44320 -8.18468 -6.41591 -6.32689 -3.89842 2.19081 2.55050 3.18659 3.19410 3.23860 3.71191 3.83079 4.06008 4.27976 4.52848 4.63795 4.71903 4.90084 4.94948 5.10490 5.12133 5.19929 5.22725 5.38481 5.42909 5.49670 5.55883 5.64723 5.66842 5.72304 5.77596 5.80194 5.90786 5.98473 6.21323 6.23642 6.50366 6.64350 6.85374 6.90500 7.12165 7.32039 7.44330 7.63323 7.95821 8.11792 8.21538 9.13360 9.87599 10.86125 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.037795 B = 0.003164 C = 0.003143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 740.651380 B = 8847.175147 C = 8906.090041 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.114 4.114 3 C -0.128 4.128 4 H 0.088 0.912 5 C 0.049 3.951 6 O -0.374 6.374 7 C 0.025 3.975 8 C 0.133 3.867 9 H 0.091 0.909 10 N -0.747 5.747 11 C 0.121 3.879 12 C -0.140 4.140 13 C -0.190 4.190 14 C 0.114 3.886 15 O -0.188 6.188 16 C -0.387 4.387 17 H 0.088 0.912 18 C 0.036 3.964 19 N -0.869 5.869 20 Si 0.938 3.062 21 H -0.275 1.275 22 H -0.279 1.279 23 H -0.269 1.269 24 C -0.150 4.150 25 C -0.147 4.147 26 H 0.055 0.945 27 H 0.054 0.946 28 H 0.056 0.944 29 H 0.066 0.934 30 H 0.070 0.930 31 H 0.088 0.912 32 H 0.060 0.940 33 H 0.099 0.901 34 H 0.061 0.939 35 H 0.392 0.608 36 H 0.106 0.894 37 H 0.127 0.873 38 H 0.267 0.733 39 H 0.117 0.883 40 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.975 -0.026 -9.776 21.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.152 4.152 3 C -0.148 4.148 4 H 0.107 0.893 5 C -0.028 4.028 6 O -0.293 6.293 7 C -0.054 4.054 8 C 0.025 3.975 9 H 0.109 0.891 10 N -0.382 5.382 11 C 0.024 3.976 12 C -0.162 4.162 13 C -0.210 4.210 14 C 0.062 3.938 15 O -0.093 6.093 16 C -0.464 4.464 17 H 0.106 0.894 18 C -0.167 4.167 19 N -0.505 5.505 20 Si 0.763 3.237 21 H -0.201 1.201 22 H -0.204 1.204 23 H -0.193 1.193 24 C -0.170 4.170 25 C -0.169 4.169 26 H 0.074 0.926 27 H 0.073 0.927 28 H 0.075 0.925 29 H 0.084 0.916 30 H 0.088 0.912 31 H 0.106 0.894 32 H 0.078 0.922 33 H 0.117 0.883 34 H 0.079 0.921 35 H 0.226 0.774 36 H 0.124 0.876 37 H 0.145 0.855 38 H 0.077 0.923 39 H 0.135 0.865 40 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -18.514 -0.168 -9.985 21.036 hybrid contribution -0.076 0.566 1.068 1.211 sum -18.590 0.398 -8.917 20.622 Atomic orbital electron populations 1.21791 0.95512 1.01838 1.01872 1.21547 0.96102 0.94849 1.02722 1.22914 0.95344 0.97591 0.98927 0.89341 1.23550 0.90118 0.94222 0.94952 1.89147 1.15543 1.39463 1.85126 1.24128 0.90520 0.95656 0.95045 1.22092 0.92960 0.96017 0.86393 0.89118 1.44246 1.17193 1.44146 1.32635 1.17396 0.86645 0.98310 0.95255 1.20232 0.97285 1.01552 0.97100 1.21000 0.94823 1.01907 1.03232 1.19245 0.86809 0.94220 0.93547 1.83981 1.26460 1.61683 1.37160 1.21236 1.05699 1.20187 0.99261 0.89449 1.25218 0.95229 0.97148 0.99080 1.70048 1.09835 1.31855 1.38799 0.85764 0.78019 0.79315 0.80609 1.20059 1.20402 1.19348 1.20019 0.96781 1.02496 0.97724 1.20174 0.94378 1.00482 1.01860 0.92606 0.92695 0.92535 0.91559 0.91158 0.89365 0.92197 0.88305 0.92098 0.77408 0.87618 0.85487 0.92291 0.86507 0.87235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.97 9.79 37.16 0.36 -0.61 16 2 C -0.11 -0.86 5.15 -26.73 -0.14 -1.00 16 3 C -0.13 -1.13 2.89 -88.88 -0.26 -1.39 16 4 H 0.09 0.79 7.68 -51.93 -0.40 0.39 16 5 C 0.05 0.43 6.54 38.11 0.25 0.68 16 6 O -0.37 -4.60 11.65 -35.23 -0.41 -5.01 16 7 C 0.02 0.29 7.35 37.93 0.28 0.57 16 8 C 0.13 1.48 2.76 -66.36 -0.18 1.30 16 9 H 0.09 1.02 6.10 -51.93 -0.32 0.71 16 10 N -0.75 -9.95 5.28 -50.60 -0.27 -10.22 16 11 C 0.12 2.06 6.66 -83.71 -0.56 1.50 16 12 C -0.14 -2.57 9.89 -39.40 -0.39 -2.96 16 13 C -0.19 -4.16 9.16 -39.42 -0.36 -4.52 16 14 C 0.11 2.79 6.65 -39.09 -0.26 2.53 16 15 O -0.19 -5.46 9.75 0.00 0.00 -5.46 16 16 C -0.39 -11.03 9.48 30.88 0.29 -10.74 16 17 H 0.09 2.31 5.20 -52.49 -0.27 2.03 16 18 C 0.04 1.02 5.49 -17.51 -0.10 0.92 16 19 N -0.87 -26.03 13.67 55.48 0.76 -25.27 16 20 Si 0.94 20.97 29.55 -169.99 -5.02 15.94 16 21 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 22 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 23 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 24 C -0.15 -3.18 9.98 -39.42 -0.39 -3.58 16 25 C -0.15 -2.61 9.21 -39.40 -0.36 -2.97 16 26 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 27 H 0.05 0.31 7.64 -51.93 -0.40 -0.08 16 28 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.07 0.46 7.97 -51.93 -0.41 0.05 16 30 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.06 0.46 7.76 -51.93 -0.40 0.06 16 33 H 0.10 1.31 8.06 -51.93 -0.42 0.89 16 34 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.39 4.77 8.36 -40.82 -0.34 4.43 16 36 H 0.11 1.68 8.06 -52.49 -0.42 1.26 16 37 H 0.13 2.80 5.63 -52.49 -0.30 2.51 16 38 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 39 H 0.12 2.39 8.06 -52.49 -0.42 1.96 16 40 H 0.11 1.63 6.24 -52.48 -0.33 1.31 16 LS Contribution 328.01 15.07 4.94 4.94 Total: -1.00 -31.53 328.01 -7.49 -39.02 By element: Atomic # 1 Polarization: 11.98 SS G_CDS: -5.68 Total: 6.30 kcal Atomic # 6 Polarization: -18.44 SS G_CDS: -1.81 Total: -20.25 kcal Atomic # 7 Polarization: -35.98 SS G_CDS: 0.49 Total: -35.49 kcal Atomic # 8 Polarization: -10.06 SS G_CDS: -0.41 Total: -10.47 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.94 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -31.53 -7.49 -39.02 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000699438287.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.313 kcal (2) G-P(sol) polarization free energy of solvation -31.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.839 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.017 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds