Wall clock time and date at job start Mon Mar 30 2020 02:50:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52996 * 109.46942 * 2 1 4 4 H 1.09001 * 110.56827 * 52.31843 * 3 2 1 5 5 C 1.54803 * 110.61030 * 289.51421 * 3 2 1 6 6 O 1.44425 * 104.85937 * 217.51152 * 5 3 2 7 7 C 1.44430 * 105.27221 * 40.46049 * 6 5 3 8 8 C 1.54477 * 104.80397 * 319.48887 * 7 6 5 9 9 H 1.09004 * 110.51114 * 142.75777 * 8 7 6 10 10 N 1.46500 * 110.51076 * 265.33432 * 8 7 6 11 11 C 1.39787 * 119.99536 * 271.69092 * 10 8 7 12 12 C 1.38948 * 120.00043 * 180.02562 * 11 10 8 13 13 C 1.38014 * 119.99415 * 180.02562 * 12 11 10 14 14 C 1.38909 * 120.00330 * 0.02562 * 13 12 11 15 15 O 1.35788 * 119.98973 * 179.97438 * 14 13 12 16 16 C 1.34804 * 117.00614 * 5.53492 * 15 14 13 17 17 H 1.07998 * 120.00136 * 354.94989 * 16 15 14 18 18 C 1.38627 * 120.00401 * 174.94819 * 16 15 14 19 19 N 1.31582 * 119.99733 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 120.00141 * 179.72807 * 18 16 15 21 21 H 1.48499 * 109.46990 * 89.99988 * 20 18 16 22 22 H 1.48499 * 109.46884 * 209.99535 * 20 18 16 23 23 H 1.48497 * 109.47292 * 329.99835 * 20 18 16 24 24 C 1.38902 * 120.00911 * 0.24980 * 14 13 12 25 25 C 1.38006 * 120.00457 * 359.45697 * 24 14 13 26 26 H 1.08997 * 109.47372 * 300.00139 * 1 2 3 27 27 H 1.09003 * 109.47173 * 60.00267 * 1 2 3 28 28 H 1.09002 * 109.47025 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.46897 * 240.00100 * 2 1 3 30 30 H 1.08996 * 109.46832 * 119.99739 * 2 1 3 31 31 H 1.09000 * 110.38877 * 98.64124 * 5 3 2 32 32 H 1.09001 * 110.39858 * 336.38822 * 5 3 2 33 33 H 1.08993 * 110.37233 * 200.65658 * 7 6 5 34 34 H 1.08998 * 110.36978 * 78.31890 * 7 6 5 35 35 H 0.96997 * 119.99931 * 91.70122 * 10 8 7 36 36 H 1.08000 * 120.00721 * 0.02562 * 12 11 10 37 37 H 1.07993 * 119.99947 * 180.02562 * 13 12 11 38 38 H 0.96997 * 119.99735 * 180.02562 * 19 18 16 39 39 H 1.08000 * 119.99414 * 179.72524 * 24 14 13 40 40 H 1.08005 * 119.99665 * 180.26978 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5795 2.0114 0.8077 5 6 1.7653 2.1176 -1.3657 6 8 2.9231 2.9458 -1.6090 7 6 4.0528 2.1574 -1.1751 8 6 3.5796 1.4724 0.1261 9 1 3.9772 0.4596 0.1909 10 7 3.9837 2.2570 1.2954 11 6 5.2320 2.0393 1.8857 12 6 5.6151 2.7830 2.9951 13 6 6.8478 2.5682 3.5775 14 6 7.7056 1.6091 3.0543 15 8 8.9185 1.3984 3.6272 16 6 9.1825 2.0696 4.7660 17 1 8.4787 2.7992 5.1383 18 6 10.3574 1.8233 5.4594 19 7 11.2147 0.9340 5.0062 20 14 10.7266 2.7589 7.0335 21 1 10.1774 2.0121 8.1936 22 1 12.1962 2.9047 7.1895 23 1 10.0998 4.1035 6.9688 24 6 7.3251 0.8695 1.9418 25 6 6.0901 1.0797 1.3628 26 1 -0.3634 0.5138 0.8899 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 0.8651 2.7300 -1.3124 32 1 1.6657 1.3653 -2.1482 33 1 4.9099 2.8004 -0.9754 34 1 4.3051 1.4100 -1.9273 35 1 3.3850 2.9274 1.6601 36 1 4.9484 3.5290 3.4017 37 1 7.1455 3.1459 4.4400 38 1 12.0365 0.7614 5.4915 39 1 7.9940 0.1269 1.5325 40 1 5.7926 0.5015 0.5004 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000699438287.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:12 Heat of formation + Delta-G solvation = -69.071645 kcal Electronic energy + Delta-G solvation = -21009.667291 eV Core-core repulsion = 17789.053778 eV Total energy + Delta-G solvation = -3220.613513 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.11193 -40.39795 -38.46630 -35.85771 -35.02003 -34.03466 -31.89843 -30.66571 -29.10510 -28.36022 -26.97235 -24.78073 -23.94482 -23.13781 -21.87810 -21.28504 -19.66089 -18.85720 -17.83567 -17.42990 -16.81621 -16.66108 -16.25910 -16.03950 -15.40722 -15.33632 -15.21255 -14.76952 -14.45162 -14.26843 -14.06759 -13.80045 -13.47142 -13.38832 -13.17283 -12.91415 -12.74910 -12.50789 -12.42780 -12.16552 -12.09762 -11.86075 -11.68528 -11.45411 -11.10026 -11.03082 -10.73801 -10.12217 -9.78154 -8.39399 -7.95045 -6.03045 0.58165 0.92060 1.36827 1.46540 1.54038 2.22705 2.56676 2.90309 3.04474 3.24711 3.50252 3.66793 3.83697 3.95218 4.06519 4.12984 4.19505 4.32446 4.40021 4.51024 4.55107 4.56564 4.63062 4.72628 4.84157 4.88851 4.90891 4.95613 5.07279 5.13570 5.20978 5.27327 5.30430 5.44733 5.48081 5.53962 5.77623 5.82603 5.99893 6.11416 6.60225 6.98071 7.06589 7.93265 8.85123 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.037795 B = 0.003164 C = 0.003143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 740.651380 B = 8847.175147 C = 8906.090041 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.112 4.112 3 C -0.118 4.118 4 H 0.091 0.909 5 C 0.047 3.953 6 O -0.397 6.397 7 C 0.026 3.974 8 C 0.126 3.874 9 H 0.096 0.904 10 N -0.735 5.735 11 C 0.152 3.848 12 C -0.145 4.145 13 C -0.194 4.194 14 C 0.063 3.937 15 O -0.242 6.242 16 C -0.406 4.406 17 H 0.098 0.902 18 C -0.028 4.028 19 N -0.927 5.927 20 Si 1.016 2.984 21 H -0.264 1.264 22 H -0.273 1.273 23 H -0.254 1.254 24 C -0.155 4.155 25 C -0.144 4.144 26 H 0.053 0.947 27 H 0.063 0.937 28 H 0.060 0.940 29 H 0.074 0.926 30 H 0.061 0.939 31 H 0.102 0.898 32 H 0.075 0.925 33 H 0.079 0.921 34 H 0.079 0.921 35 H 0.402 0.598 36 H 0.137 0.863 37 H 0.118 0.882 38 H 0.270 0.730 39 H 0.114 0.886 40 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.223 0.628 -10.499 24.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.150 4.150 3 C -0.137 4.137 4 H 0.109 0.891 5 C -0.030 4.030 6 O -0.316 6.316 7 C -0.052 4.052 8 C 0.019 3.981 9 H 0.114 0.886 10 N -0.369 5.369 11 C 0.051 3.949 12 C -0.167 4.167 13 C -0.213 4.213 14 C 0.014 3.986 15 O -0.150 6.150 16 C -0.483 4.483 17 H 0.115 0.885 18 C -0.224 4.224 19 N -0.566 5.566 20 Si 0.836 3.164 21 H -0.189 1.189 22 H -0.198 1.198 23 H -0.178 1.178 24 C -0.174 4.174 25 C -0.166 4.166 26 H 0.072 0.928 27 H 0.082 0.918 28 H 0.079 0.921 29 H 0.093 0.907 30 H 0.080 0.920 31 H 0.120 0.880 32 H 0.093 0.907 33 H 0.097 0.903 34 H 0.097 0.903 35 H 0.237 0.763 36 H 0.155 0.845 37 H 0.136 0.864 38 H 0.079 0.921 39 H 0.132 0.868 40 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -21.862 0.501 -10.759 24.371 hybrid contribution 0.576 0.360 1.020 1.225 sum -21.286 0.862 -9.739 23.424 Atomic orbital electron populations 1.21780 0.94536 1.02314 1.02253 1.21533 0.96917 0.93762 1.02749 1.22854 0.93226 0.98574 0.99092 0.89122 1.23743 0.89481 0.94524 0.95225 1.89131 1.16551 1.40614 1.85323 1.24076 0.89989 0.95560 0.95605 1.22327 0.94921 0.95644 0.85173 0.88642 1.44364 1.15634 1.44136 1.32723 1.17512 0.87448 0.96142 0.93761 1.20484 0.96391 1.02397 0.97422 1.21051 0.95874 1.01266 1.03159 1.19749 0.86780 0.96741 0.95364 1.83929 1.29208 1.63605 1.38256 1.21749 1.06341 1.20534 0.99671 0.88485 1.26521 0.94708 0.98229 1.02961 1.70202 1.10781 1.34552 1.41102 0.84618 0.78014 0.78266 0.75503 1.18924 1.19759 1.17769 1.20241 0.98132 1.02072 0.96985 1.20446 0.92936 1.00762 1.02444 0.92764 0.91802 0.92088 0.90735 0.91996 0.87977 0.90695 0.90310 0.90315 0.76265 0.84521 0.86422 0.92138 0.86773 0.83856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.41 9.79 71.98 0.71 -0.71 16 2 C -0.11 -1.29 5.15 30.59 0.16 -1.13 16 3 C -0.12 -1.64 2.89 -9.67 -0.03 -1.67 16 4 H 0.09 1.26 7.68 -2.39 -0.02 1.24 16 5 C 0.05 0.65 6.54 72.60 0.47 1.13 16 6 O -0.40 -8.57 11.65 -148.98 -1.74 -10.31 16 7 C 0.03 0.53 7.35 72.48 0.53 1.06 16 8 C 0.13 2.36 2.76 46.01 0.13 2.49 16 9 H 0.10 1.77 6.10 -2.38 -0.01 1.76 16 10 N -0.73 -17.04 5.28 -314.01 -1.66 -18.70 16 11 C 0.15 4.77 6.66 38.21 0.25 5.03 16 12 C -0.14 -5.08 9.89 22.39 0.22 -4.86 16 13 C -0.19 -8.62 9.16 22.38 0.20 -8.42 16 14 C 0.06 3.22 6.65 22.59 0.15 3.37 16 15 O -0.24 -14.95 9.75 -22.90 -0.22 -15.18 16 16 C -0.41 -24.31 9.48 67.91 0.64 -23.66 16 17 H 0.10 5.34 5.20 -2.91 -0.02 5.32 16 18 C -0.03 -1.63 5.49 84.82 0.47 -1.17 16 19 N -0.93 -58.38 13.67 21.61 0.30 -58.09 16 20 Si 1.02 44.07 29.55 68.60 2.03 46.10 16 21 H -0.26 -10.87 7.11 99.48 0.71 -10.17 16 22 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 23 H -0.25 -10.23 7.11 99.48 0.71 -9.52 16 24 C -0.15 -6.66 9.98 22.37 0.22 -6.44 16 25 C -0.14 -4.84 9.21 22.38 0.21 -4.64 16 26 H 0.05 0.53 8.14 -2.39 -0.02 0.51 16 27 H 0.06 0.49 7.64 -2.39 -0.02 0.47 16 28 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 29 H 0.07 0.75 7.97 -2.39 -0.02 0.73 16 30 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 31 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16 32 H 0.07 0.85 7.76 -2.39 -0.02 0.83 16 33 H 0.08 1.92 8.06 -2.39 -0.02 1.90 16 34 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 35 H 0.40 8.22 8.36 -92.71 -0.77 7.45 16 36 H 0.14 3.92 8.06 -2.91 -0.02 3.90 16 37 H 0.12 5.34 5.63 -2.91 -0.02 5.33 16 38 H 0.27 15.58 8.31 -92.71 -0.77 14.81 16 39 H 0.11 4.85 8.06 -2.91 -0.02 4.82 16 40 H 0.14 3.83 6.24 -2.91 -0.02 3.81 16 Total: -1.00 -72.83 328.01 3.32 -69.51 By element: Atomic # 1 Polarization: 26.01 SS G_CDS: 0.27 Total: 26.28 kcal Atomic # 6 Polarization: -43.96 SS G_CDS: 4.34 Total: -39.62 kcal Atomic # 7 Polarization: -75.42 SS G_CDS: -1.36 Total: -76.78 kcal Atomic # 8 Polarization: -23.52 SS G_CDS: -1.96 Total: -25.48 kcal Atomic # 14 Polarization: 44.07 SS G_CDS: 2.03 Total: 46.10 kcal Total: -72.83 3.32 -69.51 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000699438287.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.439 kcal (2) G-P(sol) polarization free energy of solvation -72.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.511 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds