Wall clock time and date at job start Mon Mar 30 2020 02:50:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 109.46838 * 2 1 4 4 H 1.09008 * 110.45770 * 305.70102 * 3 2 1 5 5 C 1.54477 * 110.51567 * 68.30515 * 3 2 1 6 6 O 1.44644 * 104.69715 * 142.52494 * 5 3 2 7 7 C 1.44431 * 105.36586 * 319.65450 * 6 5 3 8 8 C 1.54472 * 104.80406 * 40.43761 * 7 6 5 9 9 H 1.09003 * 110.51124 * 217.37326 * 8 7 6 10 10 N 1.46498 * 110.51181 * 94.66376 * 8 7 6 11 11 C 1.39787 * 120.00180 * 90.36014 * 10 8 7 12 12 C 1.38948 * 120.00253 * 359.72502 * 11 10 8 13 13 C 1.38010 * 119.98980 * 179.72456 * 12 11 10 14 14 C 1.38898 * 120.00851 * 0.54860 * 13 12 11 15 15 O 1.35797 * 119.99313 * 179.70208 * 14 13 12 16 16 C 1.34822 * 116.99632 * 174.48327 * 15 14 13 17 17 H 1.07995 * 119.99516 * 5.05673 * 16 15 14 18 18 C 1.38614 * 119.99736 * 185.05987 * 16 15 14 19 19 N 1.31585 * 119.99810 * 180.02562 * 18 16 15 20 20 Si 1.86797 * 120.00157 * 359.97438 * 18 16 15 21 21 H 1.48500 * 109.47071 * 90.00212 * 20 18 16 22 22 H 1.48500 * 109.47217 * 210.00370 * 20 18 16 23 23 H 1.48498 * 109.47281 * 330.00294 * 20 18 16 24 24 C 1.38897 * 120.01072 * 359.72711 * 14 13 12 25 25 C 1.38016 * 120.00698 * 359.97438 * 24 14 13 26 26 H 1.08998 * 109.46863 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.47149 * 60.00249 * 1 2 3 28 28 H 1.09000 * 109.47042 * 299.99865 * 1 2 3 29 29 H 1.08999 * 109.47149 * 119.99751 * 2 1 3 30 30 H 1.09000 * 109.47042 * 240.00135 * 2 1 3 31 31 H 1.08996 * 110.37175 * 261.45430 * 5 3 2 32 32 H 1.08999 * 110.36713 * 23.79167 * 5 3 2 33 33 H 1.09001 * 110.37529 * 281.60256 * 7 6 5 34 34 H 1.09006 * 110.46313 * 159.31468 * 7 6 5 35 35 H 0.97000 * 120.00324 * 270.35480 * 10 8 7 36 36 H 1.07997 * 120.00599 * 0.02562 * 12 11 10 37 37 H 1.08005 * 119.99367 * 180.29632 * 13 12 11 38 38 H 0.96998 * 119.99794 * 180.02562 * 19 18 16 39 39 H 1.08002 * 119.99816 * 180.02562 * 24 14 13 40 40 H 1.07995 * 120.00456 * 179.97438 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6050 2.0004 -0.8294 5 6 1.7162 2.1312 1.3443 6 8 2.8672 2.9637 1.6168 7 6 4.0119 2.1728 1.2295 8 6 3.5828 1.4714 -0.0782 9 1 3.9823 0.4579 -0.1169 10 7 4.0235 2.2429 -1.2430 11 6 5.2735 1.9913 -1.8159 12 6 6.1005 1.0133 -1.2772 13 6 7.3322 0.7612 -1.8465 14 6 7.7499 1.4928 -2.9508 15 8 8.9644 1.2486 -3.5070 16 6 9.2618 1.9114 -4.6428 17 1 8.5831 2.6595 -5.0248 18 6 10.4387 1.6325 -5.3200 19 7 10.7292 2.2797 -6.4282 20 14 11.6128 0.3388 -4.6588 21 1 11.2618 -0.9863 -5.2297 22 1 13.0037 0.6904 -5.0423 23 1 11.5064 0.2840 -3.1786 24 6 6.9257 2.4744 -3.4860 25 6 5.6913 2.7227 -2.9209 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 0.5138 0.8900 29 1 1.8934 -0.5138 0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 0.8174 2.7408 1.2515 32 1 1.5917 1.3874 2.1313 33 1 4.2410 1.4349 1.9984 34 1 4.8752 2.8138 1.0506 35 1 3.4479 2.9284 -1.6168 36 1 5.7775 0.4472 -0.4161 37 1 7.9731 -0.0023 -1.4307 38 1 11.5526 2.0843 -6.9024 39 1 7.2505 3.0428 -4.3450 40 1 5.0507 3.4863 -3.3368 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000699438289.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:16 Heat of formation + Delta-G solvation = -46.688463 kcal Electronic energy + Delta-G solvation = -21040.442170 eV Core-core repulsion = 17820.799265 eV Total energy + Delta-G solvation = -3219.642905 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.14222 -38.98479 -37.00787 -34.99089 -33.92432 -32.21269 -30.45645 -29.63349 -28.38876 -27.07466 -24.90158 -24.18183 -22.57881 -21.98187 -20.54534 -20.34776 -17.77133 -17.36896 -16.72641 -16.39710 -15.93192 -15.75887 -14.99979 -14.47277 -14.05453 -13.92292 -13.85277 -13.63559 -13.50690 -12.95767 -12.73372 -12.47678 -12.38856 -12.15871 -12.12250 -11.96143 -11.54919 -11.34903 -11.12805 -11.05818 -10.87342 -10.82929 -10.57235 -10.11639 -10.05633 -9.29981 -9.19680 -8.55326 -8.27501 -6.53386 -6.31262 -3.95902 2.09439 2.43586 3.27740 3.31147 3.46437 3.64210 3.78121 4.23873 4.32014 4.49469 4.56463 4.66630 4.85218 4.91477 5.00550 5.07543 5.09428 5.16924 5.21038 5.36154 5.46126 5.50711 5.56290 5.60497 5.67041 5.70176 5.75774 5.87195 5.95135 6.12623 6.15247 6.39103 6.57985 6.76211 6.81009 6.97854 7.32957 7.46371 7.76979 7.90849 8.07334 8.18764 9.05260 9.70900 10.77319 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.036380 B = 0.003264 C = 0.003255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 769.470280 B = 8575.316605 C = 8600.894783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.115 4.115 3 C -0.129 4.129 4 H 0.089 0.911 5 C 0.049 3.951 6 O -0.375 6.375 7 C 0.025 3.975 8 C 0.132 3.868 9 H 0.093 0.907 10 N -0.746 5.746 11 C 0.130 3.870 12 C -0.151 4.151 13 C -0.149 4.149 14 C 0.118 3.882 15 O -0.227 6.227 16 C -0.385 4.385 17 H 0.103 0.897 18 C 0.060 3.940 19 N -0.887 5.887 20 Si 0.905 3.095 21 H -0.275 1.275 22 H -0.284 1.284 23 H -0.260 1.260 24 C -0.175 4.175 25 C -0.141 4.141 26 H 0.056 0.944 27 H 0.055 0.945 28 H 0.054 0.946 29 H 0.065 0.935 30 H 0.070 0.930 31 H 0.089 0.911 32 H 0.060 0.940 33 H 0.061 0.939 34 H 0.099 0.901 35 H 0.393 0.607 36 H 0.111 0.889 37 H 0.117 0.883 38 H 0.277 0.723 39 H 0.134 0.866 40 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.383 -3.404 13.910 23.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.152 4.152 3 C -0.149 4.149 4 H 0.107 0.893 5 C -0.028 4.028 6 O -0.293 6.293 7 C -0.053 4.053 8 C 0.025 3.975 9 H 0.110 0.890 10 N -0.381 5.381 11 C 0.032 3.968 12 C -0.173 4.173 13 C -0.169 4.169 14 C 0.067 3.933 15 O -0.134 6.134 16 C -0.461 4.461 17 H 0.121 0.879 18 C -0.142 4.142 19 N -0.527 5.527 20 Si 0.731 3.269 21 H -0.201 1.201 22 H -0.210 1.210 23 H -0.184 1.184 24 C -0.195 4.195 25 C -0.164 4.164 26 H 0.075 0.925 27 H 0.074 0.926 28 H 0.073 0.927 29 H 0.084 0.916 30 H 0.088 0.912 31 H 0.107 0.893 32 H 0.078 0.922 33 H 0.079 0.921 34 H 0.117 0.883 35 H 0.228 0.772 36 H 0.129 0.871 37 H 0.135 0.865 38 H 0.087 0.913 39 H 0.151 0.849 40 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -18.010 -3.434 14.015 23.078 hybrid contribution 0.302 -0.325 -0.217 0.494 sum -17.709 -3.759 13.798 22.762 Atomic orbital electron populations 1.21794 0.95485 1.01868 1.01905 1.21550 0.96133 0.94846 1.02699 1.22872 0.95215 0.97593 0.99189 0.89312 1.23534 0.90253 0.94080 0.94941 1.89175 1.15187 1.38982 1.85991 1.24113 0.90274 0.95584 0.95360 1.22107 0.92839 0.96175 0.86406 0.88961 1.44279 1.17647 1.43031 1.33117 1.17456 0.86561 0.97710 0.95049 1.20166 0.94730 1.00454 1.01983 1.20007 0.96843 1.02261 0.97776 1.18968 0.86062 0.94591 0.93715 1.83577 1.28399 1.62510 1.38885 1.20707 1.07390 1.19535 0.98427 0.87942 1.24426 0.97100 0.97908 0.94776 1.69665 1.25785 1.41409 1.15834 0.86182 0.79129 0.81075 0.80484 1.20070 1.21001 1.18445 1.21120 0.94646 1.00844 1.02874 1.20291 0.97251 1.01603 0.97206 0.92520 0.92570 0.92678 0.91584 0.91168 0.89268 0.92150 0.92105 0.88326 0.77246 0.87063 0.86538 0.91293 0.84854 0.87312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.93 9.78 37.16 0.36 -0.57 16 2 C -0.11 -0.82 5.14 -26.73 -0.14 -0.96 16 3 C -0.13 -1.09 2.89 -89.05 -0.26 -1.34 16 4 H 0.09 0.76 7.70 -51.92 -0.40 0.36 16 5 C 0.05 0.42 6.43 37.93 0.24 0.66 16 6 O -0.37 -4.44 11.65 -35.23 -0.41 -4.85 16 7 C 0.03 0.28 7.36 37.93 0.28 0.56 16 8 C 0.13 1.40 2.83 -66.37 -0.19 1.21 16 9 H 0.09 0.98 6.00 -51.93 -0.31 0.66 16 10 N -0.75 -9.52 5.26 -50.60 -0.27 -9.78 16 11 C 0.13 2.12 6.66 -83.70 -0.56 1.56 16 12 C -0.15 -2.52 9.21 -39.40 -0.36 -2.89 16 13 C -0.15 -2.93 9.98 -39.42 -0.39 -3.33 16 14 C 0.12 2.73 6.65 -39.09 -0.26 2.47 16 15 O -0.23 -6.08 8.58 -0.08 0.00 -6.08 16 16 C -0.38 -11.01 9.94 30.87 0.31 -10.70 16 17 H 0.10 2.99 5.43 -52.49 -0.28 2.70 16 18 C 0.06 1.71 5.49 -17.52 -0.10 1.61 16 19 N -0.89 -26.15 13.96 55.48 0.77 -25.38 16 20 Si 0.91 22.10 28.62 -169.99 -4.86 17.23 16 21 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 22 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 23 H -0.26 -6.36 7.11 56.52 0.40 -5.96 16 24 C -0.18 -3.78 9.16 -39.42 -0.36 -4.14 16 25 C -0.14 -2.55 9.89 -39.40 -0.39 -2.94 16 26 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 27 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.05 0.30 7.55 -51.93 -0.39 -0.09 16 29 H 0.07 0.44 8.02 -51.93 -0.42 0.02 16 30 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.06 0.44 7.78 -51.93 -0.40 0.04 16 33 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 34 H 0.10 1.24 8.06 -51.93 -0.42 0.82 16 35 H 0.39 4.62 8.39 -40.82 -0.34 4.28 16 36 H 0.11 1.54 6.20 -52.49 -0.33 1.22 16 37 H 0.12 2.13 8.06 -52.48 -0.42 1.71 16 38 H 0.28 7.56 8.31 -40.82 -0.34 7.22 16 39 H 0.13 3.04 5.63 -52.49 -0.30 2.75 16 40 H 0.11 1.71 8.06 -52.49 -0.42 1.28 16 LS Contribution 326.71 15.07 4.92 4.92 Total: -1.00 -30.52 326.71 -7.34 -37.86 By element: Atomic # 1 Polarization: 10.56 SS G_CDS: -5.69 Total: 4.88 kcal Atomic # 6 Polarization: -16.99 SS G_CDS: -1.81 Total: -18.80 kcal Atomic # 7 Polarization: -35.67 SS G_CDS: 0.51 Total: -35.16 kcal Atomic # 8 Polarization: -10.52 SS G_CDS: -0.41 Total: -10.93 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -4.86 Total: 17.23 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -30.52 -7.34 -37.86 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000699438289.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.831 kcal (2) G-P(sol) polarization free energy of solvation -30.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.857 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds