Wall clock time and date at job start Mon Mar 30 2020 02:50:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 109.46838 * 2 1 4 4 H 1.09008 * 110.45770 * 305.70102 * 3 2 1 5 5 C 1.54477 * 110.51567 * 68.30515 * 3 2 1 6 6 O 1.44644 * 104.69715 * 142.52494 * 5 3 2 7 7 C 1.44431 * 105.36586 * 319.65450 * 6 5 3 8 8 C 1.54472 * 104.80406 * 40.43761 * 7 6 5 9 9 H 1.09003 * 110.51124 * 217.37326 * 8 7 6 10 10 N 1.46498 * 110.51181 * 94.66376 * 8 7 6 11 11 C 1.39787 * 120.00180 * 90.36014 * 10 8 7 12 12 C 1.38948 * 120.00253 * 359.72502 * 11 10 8 13 13 C 1.38010 * 119.98980 * 179.72456 * 12 11 10 14 14 C 1.38898 * 120.00851 * 0.54860 * 13 12 11 15 15 O 1.35797 * 119.99313 * 179.70208 * 14 13 12 16 16 C 1.34822 * 116.99632 * 174.48327 * 15 14 13 17 17 H 1.07995 * 119.99516 * 5.05673 * 16 15 14 18 18 C 1.38614 * 119.99736 * 185.05987 * 16 15 14 19 19 N 1.31585 * 119.99810 * 180.02562 * 18 16 15 20 20 Si 1.86797 * 120.00157 * 359.97438 * 18 16 15 21 21 H 1.48500 * 109.47071 * 90.00212 * 20 18 16 22 22 H 1.48500 * 109.47217 * 210.00370 * 20 18 16 23 23 H 1.48498 * 109.47281 * 330.00294 * 20 18 16 24 24 C 1.38897 * 120.01072 * 359.72711 * 14 13 12 25 25 C 1.38016 * 120.00698 * 359.97438 * 24 14 13 26 26 H 1.08998 * 109.46863 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.47149 * 60.00249 * 1 2 3 28 28 H 1.09000 * 109.47042 * 299.99865 * 1 2 3 29 29 H 1.08999 * 109.47149 * 119.99751 * 2 1 3 30 30 H 1.09000 * 109.47042 * 240.00135 * 2 1 3 31 31 H 1.08996 * 110.37175 * 261.45430 * 5 3 2 32 32 H 1.08999 * 110.36713 * 23.79167 * 5 3 2 33 33 H 1.09001 * 110.37529 * 281.60256 * 7 6 5 34 34 H 1.09006 * 110.46313 * 159.31468 * 7 6 5 35 35 H 0.97000 * 120.00324 * 270.35480 * 10 8 7 36 36 H 1.07997 * 120.00599 * 0.02562 * 12 11 10 37 37 H 1.08005 * 119.99367 * 180.29632 * 13 12 11 38 38 H 0.96998 * 119.99794 * 180.02562 * 19 18 16 39 39 H 1.08002 * 119.99816 * 180.02562 * 24 14 13 40 40 H 1.07995 * 120.00456 * 179.97438 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6050 2.0004 -0.8294 5 6 1.7162 2.1312 1.3443 6 8 2.8672 2.9637 1.6168 7 6 4.0119 2.1728 1.2295 8 6 3.5828 1.4714 -0.0782 9 1 3.9823 0.4579 -0.1169 10 7 4.0235 2.2429 -1.2430 11 6 5.2735 1.9913 -1.8159 12 6 6.1005 1.0133 -1.2772 13 6 7.3322 0.7612 -1.8465 14 6 7.7499 1.4928 -2.9508 15 8 8.9644 1.2486 -3.5070 16 6 9.2618 1.9114 -4.6428 17 1 8.5831 2.6595 -5.0248 18 6 10.4387 1.6325 -5.3200 19 7 10.7292 2.2797 -6.4282 20 14 11.6128 0.3388 -4.6588 21 1 11.2618 -0.9863 -5.2297 22 1 13.0037 0.6904 -5.0423 23 1 11.5064 0.2840 -3.1786 24 6 6.9257 2.4744 -3.4860 25 6 5.6913 2.7227 -2.9209 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 0.5138 0.8900 29 1 1.8934 -0.5138 0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 0.8174 2.7408 1.2515 32 1 1.5917 1.3874 2.1313 33 1 4.2410 1.4349 1.9984 34 1 4.8752 2.8138 1.0506 35 1 3.4479 2.9284 -1.6168 36 1 5.7775 0.4472 -0.4161 37 1 7.9731 -0.0023 -1.4307 38 1 11.5526 2.0843 -6.9024 39 1 7.2505 3.0428 -4.3450 40 1 5.0507 3.4863 -3.3368 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000699438289.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:15 Heat of formation + Delta-G solvation = -66.302926 kcal Electronic energy + Delta-G solvation = -21041.292717 eV Core-core repulsion = 17820.799265 eV Total energy + Delta-G solvation = -3220.493452 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.14447 -40.48231 -38.57215 -35.85850 -35.04016 -34.25421 -31.93430 -30.73328 -29.11368 -28.53303 -26.77356 -24.80546 -23.99941 -23.11788 -21.80761 -21.28130 -19.63912 -19.08886 -17.86990 -17.50492 -16.82926 -16.69339 -16.36752 -15.79914 -15.56633 -15.38555 -15.23839 -14.77184 -14.38057 -14.33771 -14.14931 -13.86165 -13.77922 -13.43765 -13.26832 -12.93365 -12.77771 -12.55685 -12.45983 -12.19575 -11.96866 -11.84804 -11.67818 -11.45935 -11.20336 -11.06573 -10.79338 -10.20495 -9.81012 -8.43395 -8.00279 -6.11454 0.55392 0.86804 1.33846 1.38533 1.55330 2.33111 2.53897 2.83826 3.03714 3.16519 3.29145 3.50689 3.84170 3.95049 4.04674 4.10914 4.18362 4.32808 4.40460 4.50189 4.54801 4.55455 4.62567 4.70321 4.84344 4.86761 4.90919 4.92802 5.06260 5.20752 5.22384 5.23806 5.32507 5.44894 5.47411 5.61871 5.78754 5.85084 5.88067 6.14555 6.58694 6.92150 6.94028 7.72349 8.69109 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.036380 B = 0.003264 C = 0.003255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 769.470280 B = 8575.316605 C = 8600.894783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.111 4.111 3 C -0.120 4.120 4 H 0.088 0.912 5 C 0.047 3.953 6 O -0.399 6.399 7 C 0.026 3.974 8 C 0.126 3.874 9 H 0.101 0.899 10 N -0.735 5.735 11 C 0.160 3.840 12 C -0.147 4.147 13 C -0.140 4.140 14 C 0.067 3.933 15 O -0.254 6.254 16 C -0.391 4.391 17 H 0.077 0.923 18 C 0.004 3.996 19 N -0.932 5.932 20 Si 0.972 3.028 21 H -0.266 1.266 22 H -0.270 1.270 23 H -0.262 1.262 24 C -0.187 4.187 25 C -0.151 4.151 26 H 0.060 0.940 27 H 0.052 0.948 28 H 0.063 0.937 29 H 0.076 0.924 30 H 0.062 0.938 31 H 0.101 0.899 32 H 0.076 0.924 33 H 0.081 0.919 34 H 0.080 0.920 35 H 0.401 0.599 36 H 0.150 0.850 37 H 0.130 0.870 38 H 0.282 0.718 39 H 0.106 0.894 40 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.615 -4.936 16.628 26.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.149 4.149 3 C -0.140 4.140 4 H 0.106 0.894 5 C -0.029 4.029 6 O -0.318 6.318 7 C -0.052 4.052 8 C 0.019 3.981 9 H 0.119 0.881 10 N -0.368 5.368 11 C 0.059 3.941 12 C -0.169 4.169 13 C -0.160 4.160 14 C 0.018 3.982 15 O -0.163 6.163 16 C -0.468 4.468 17 H 0.094 0.906 18 C -0.193 4.193 19 N -0.574 5.574 20 Si 0.795 3.205 21 H -0.191 1.191 22 H -0.195 1.195 23 H -0.187 1.187 24 C -0.207 4.207 25 C -0.173 4.173 26 H 0.079 0.921 27 H 0.071 0.929 28 H 0.082 0.918 29 H 0.094 0.906 30 H 0.081 0.919 31 H 0.119 0.881 32 H 0.094 0.906 33 H 0.099 0.901 34 H 0.098 0.902 35 H 0.236 0.764 36 H 0.168 0.832 37 H 0.148 0.852 38 H 0.092 0.908 39 H 0.124 0.876 40 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -20.324 -4.956 16.777 26.816 hybrid contribution 0.602 0.223 -0.852 1.067 sum -19.723 -4.733 15.924 25.787 Atomic orbital electron populations 1.21787 0.94671 1.02318 1.02203 1.21534 0.96817 0.93744 1.02825 1.22812 0.93317 0.98560 0.99264 0.89388 1.23718 0.89605 0.94334 0.95251 1.89159 1.16230 1.40218 1.86212 1.24082 0.89677 0.95524 0.95936 1.22356 0.94577 0.95977 0.85156 0.88099 1.44425 1.16130 1.43001 1.33258 1.17560 0.87397 0.95744 0.93378 1.20525 0.93372 1.00393 1.02587 1.20306 0.97929 1.01552 0.96210 1.19476 0.86004 0.96912 0.95762 1.83504 1.30680 1.63442 1.38626 1.20672 1.07335 1.19349 0.99464 0.90559 1.25267 0.98759 1.00196 0.95096 1.69756 1.26856 1.43456 1.17360 0.85186 0.77341 0.78515 0.79466 1.19144 1.19504 1.18660 1.21064 0.96213 1.00813 1.02619 1.20448 0.96254 1.02649 0.97960 0.92058 0.92874 0.91825 0.90583 0.91943 0.88112 0.90564 0.90092 0.90204 0.76359 0.83207 0.85160 0.90846 0.87567 0.85117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.35 9.78 71.98 0.70 -0.64 16 2 C -0.11 -1.18 5.14 30.60 0.16 -1.02 16 3 C -0.12 -1.57 2.89 -9.78 -0.03 -1.60 16 4 H 0.09 1.20 7.70 -2.38 -0.02 1.18 16 5 C 0.05 0.63 6.43 72.48 0.47 1.09 16 6 O -0.40 -8.23 11.65 -148.98 -1.74 -9.97 16 7 C 0.03 0.49 7.36 72.48 0.53 1.02 16 8 C 0.13 2.17 2.83 46.01 0.13 2.30 16 9 H 0.10 1.64 6.00 -2.39 -0.01 1.63 16 10 N -0.74 -16.32 5.26 -314.02 -1.65 -17.98 16 11 C 0.16 4.80 6.66 38.21 0.25 5.05 16 12 C -0.15 -4.45 9.21 22.39 0.21 -4.25 16 13 C -0.14 -5.35 9.98 22.37 0.22 -5.13 16 14 C 0.07 3.19 6.65 22.59 0.15 3.34 16 15 O -0.25 -14.11 8.58 -23.19 -0.20 -14.31 16 16 C -0.39 -23.70 9.94 67.91 0.68 -23.02 16 17 H 0.08 4.85 5.43 -2.91 -0.02 4.83 16 18 C 0.00 0.22 5.49 84.82 0.47 0.68 16 19 N -0.93 -57.24 13.96 21.61 0.30 -56.94 16 20 Si 0.97 46.63 28.62 68.60 1.96 48.59 16 21 H -0.27 -12.24 7.11 99.48 0.71 -11.54 16 22 H -0.27 -12.14 7.11 99.48 0.71 -11.44 16 23 H -0.26 -12.50 7.11 99.48 0.71 -11.79 16 24 C -0.19 -8.42 9.16 22.38 0.20 -8.22 16 25 C -0.15 -5.33 9.89 22.39 0.22 -5.11 16 26 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 27 H 0.05 0.51 8.14 -2.39 -0.02 0.49 16 28 H 0.06 0.46 7.55 -2.39 -0.02 0.44 16 29 H 0.08 0.68 8.02 -2.39 -0.02 0.66 16 30 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 31 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16 32 H 0.08 0.79 7.78 -2.39 -0.02 0.77 16 33 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 34 H 0.08 1.79 8.06 -2.38 -0.02 1.77 16 35 H 0.40 8.12 8.39 -92.71 -0.78 7.35 16 36 H 0.15 3.42 6.20 -2.91 -0.02 3.40 16 37 H 0.13 4.54 8.06 -2.91 -0.02 4.52 16 38 H 0.28 15.91 8.31 -92.71 -0.77 15.13 16 39 H 0.11 5.28 5.63 -2.91 -0.02 5.26 16 40 H 0.13 3.95 8.06 -2.91 -0.02 3.93 16 Total: -1.00 -69.29 326.71 3.31 -65.98 By element: Atomic # 1 Polarization: 19.84 SS G_CDS: 0.27 Total: 20.11 kcal Atomic # 6 Polarization: -39.86 SS G_CDS: 4.36 Total: -35.50 kcal Atomic # 7 Polarization: -73.56 SS G_CDS: -1.35 Total: -74.91 kcal Atomic # 8 Polarization: -22.34 SS G_CDS: -1.94 Total: -24.27 kcal Atomic # 14 Polarization: 46.63 SS G_CDS: 1.96 Total: 48.59 kcal Total: -69.29 3.31 -65.98 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000699438289.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.321 kcal (2) G-P(sol) polarization free energy of solvation -69.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.982 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds