Wall clock time and date at job start Mon Mar 30 2020 02:50:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53002 * 109.47619 * 2 1 4 4 H 1.09000 * 110.82847 * 51.34960 * 3 2 1 5 5 C 1.54994 * 110.90647 * 287.71032 * 3 2 1 6 6 O 1.44378 * 103.49016 * 204.77238 * 5 3 2 7 7 C 1.44054 * 106.97747 * 40.13909 * 6 5 3 8 8 C 1.54093 * 107.13687 * 333.37998 * 7 6 5 9 9 H 1.08995 * 110.49011 * 243.39013 * 8 7 6 10 10 N 1.46497 * 110.48736 * 120.87566 * 8 7 6 11 11 C 1.39784 * 119.99899 * 88.24418 * 10 8 7 12 12 C 1.38947 * 120.00893 * 359.72692 * 11 10 8 13 13 C 1.38008 * 119.99581 * 179.76953 * 12 11 10 14 14 C 1.38904 * 120.00426 * 0.50227 * 13 12 11 15 15 O 1.35799 * 119.99020 * 179.77064 * 14 13 12 16 16 C 1.34813 * 116.99428 * 174.43762 * 15 14 13 17 17 H 1.07996 * 120.00202 * 5.05095 * 16 15 14 18 18 C 1.38628 * 119.99670 * 185.05335 * 16 15 14 19 19 N 1.31574 * 119.99945 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 119.99786 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.46736 * 90.00063 * 20 18 16 22 22 H 1.48499 * 109.46874 * 209.99944 * 20 18 16 23 23 H 1.48496 * 109.47180 * 330.00103 * 20 18 16 24 24 C 1.38899 * 120.00966 * 359.74918 * 14 13 12 25 25 C 1.38008 * 120.00828 * 0.02562 * 24 14 13 26 26 H 1.08998 * 109.47275 * 59.99726 * 1 2 3 27 27 H 1.09000 * 109.47008 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47166 * 299.99651 * 1 2 3 29 29 H 1.09007 * 109.46869 * 240.00484 * 2 1 3 30 30 H 1.09005 * 109.47453 * 120.00659 * 2 1 3 31 31 H 1.09002 * 110.61868 * 323.27599 * 5 3 2 32 32 H 1.09001 * 110.62189 * 86.27006 * 5 3 2 33 33 H 1.09006 * 109.92206 * 214.01961 * 7 6 5 34 34 H 1.09000 * 109.98507 * 92.77513 * 7 6 5 35 35 H 0.97000 * 120.00010 * 268.24587 * 10 8 7 36 36 H 1.08004 * 120.00031 * 0.02562 * 12 11 10 37 37 H 1.07995 * 119.99636 * 180.23347 * 13 12 11 38 38 H 0.97000 * 120.00353 * 180.02562 * 19 18 16 39 39 H 1.08002 * 119.98889 * 179.97438 * 24 14 13 40 40 H 1.07995 * 119.99840 * 180.02562 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5694 2.0200 0.7956 5 6 1.8092 2.1108 -1.3793 6 8 2.8149 3.1457 -1.4246 7 6 4.0155 2.5909 -0.8537 8 6 3.5825 1.4831 0.1260 9 1 3.8754 1.7384 1.1443 10 7 4.1630 0.1964 -0.2659 11 6 5.4262 -0.1728 0.2050 12 6 6.1339 0.6828 1.0403 13 6 7.3791 0.3160 1.5089 14 6 7.9294 -0.9041 1.1372 15 8 9.1566 -1.2627 1.5948 16 6 9.5836 -2.5050 1.2918 17 1 8.9943 -3.1352 0.6422 18 6 10.7792 -2.9736 1.8141 19 7 11.4969 -2.2060 2.6059 20 14 11.3706 -4.6952 1.3948 21 1 12.2113 -4.6456 0.1717 22 1 12.1712 -5.2323 2.5243 23 1 10.1995 -5.5762 1.1551 24 6 7.2244 -1.7574 0.2981 25 6 5.9772 -1.3930 -0.1671 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8933 -0.5138 -0.8901 30 1 1.8934 -0.5139 0.8899 31 1 1.9616 1.3919 -2.1844 32 1 0.8103 2.5436 -1.4338 33 1 4.5645 3.3655 -0.3182 34 1 4.6404 2.1671 -1.6398 35 1 3.6708 -0.3993 -0.8522 36 1 5.7078 1.6332 1.3260 37 1 7.9275 0.9794 2.1611 38 1 12.3337 -2.5337 2.9711 39 1 7.6527 -2.7057 0.0090 40 1 5.4290 -2.0567 -0.8192 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000699438291.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:19 Heat of formation + Delta-G solvation = -43.756100 kcal Electronic energy + Delta-G solvation = -21145.580118 eV Core-core repulsion = 17926.064370 eV Total energy + Delta-G solvation = -3219.515749 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.17474 -38.82825 -36.85573 -35.13389 -33.57955 -32.06518 -30.39785 -29.59155 -28.37423 -26.85097 -25.06023 -24.15098 -22.63219 -21.72797 -21.10329 -19.72752 -17.84324 -17.42889 -16.79175 -16.15923 -15.76682 -15.53251 -14.92557 -14.47446 -14.30128 -13.97386 -13.65033 -13.49925 -13.41949 -13.04130 -12.69277 -12.61575 -12.45031 -12.25536 -11.83356 -11.57744 -11.42382 -11.28284 -11.08282 -11.00276 -10.91136 -10.74825 -10.50792 -10.34352 -9.83173 -9.26692 -9.21268 -8.47728 -8.20079 -6.44603 -6.33698 -3.91084 2.17651 2.53299 3.17614 3.18453 3.23021 3.60513 3.89073 4.04961 4.26124 4.47895 4.60725 4.70408 4.94809 4.98595 5.07753 5.16394 5.18859 5.20767 5.40420 5.46823 5.51647 5.58855 5.63520 5.72168 5.75724 5.77011 5.81598 5.93400 6.01827 6.19592 6.21315 6.50447 6.65818 6.84197 6.88783 7.10772 7.30408 7.42282 7.61187 7.92743 8.10523 8.17667 9.12200 9.86238 10.85006 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.034818 B = 0.003358 C = 0.003189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 803.979880 B = 8336.582064 C = 8777.231947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.110 4.110 3 C -0.129 4.129 4 H 0.093 0.907 5 C 0.052 3.948 6 O -0.381 6.381 7 C 0.027 3.973 8 C 0.131 3.869 9 H 0.091 0.909 10 N -0.749 5.749 11 C 0.120 3.880 12 C -0.145 4.145 13 C -0.150 4.150 14 C 0.115 3.885 15 O -0.188 6.188 16 C -0.388 4.388 17 H 0.088 0.912 18 C 0.036 3.964 19 N -0.868 5.868 20 Si 0.938 3.062 21 H -0.275 1.275 22 H -0.279 1.279 23 H -0.269 1.269 24 C -0.190 4.190 25 C -0.139 4.139 26 H 0.053 0.947 27 H 0.055 0.945 28 H 0.055 0.945 29 H 0.063 0.937 30 H 0.073 0.927 31 H 0.059 0.941 32 H 0.090 0.910 33 H 0.086 0.914 34 H 0.068 0.932 35 H 0.392 0.608 36 H 0.110 0.890 37 H 0.117 0.883 38 H 0.267 0.733 39 H 0.127 0.873 40 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.306 4.982 -5.818 20.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.148 4.148 3 C -0.149 4.149 4 H 0.111 0.889 5 C -0.025 4.025 6 O -0.299 6.299 7 C -0.051 4.051 8 C 0.024 3.976 9 H 0.109 0.891 10 N -0.386 5.386 11 C 0.023 3.977 12 C -0.167 4.167 13 C -0.170 4.170 14 C 0.062 3.938 15 O -0.093 6.093 16 C -0.464 4.464 17 H 0.106 0.894 18 C -0.167 4.167 19 N -0.505 5.505 20 Si 0.763 3.237 21 H -0.200 1.200 22 H -0.204 1.204 23 H -0.194 1.194 24 C -0.210 4.210 25 C -0.162 4.162 26 H 0.072 0.928 27 H 0.074 0.926 28 H 0.074 0.926 29 H 0.082 0.918 30 H 0.092 0.908 31 H 0.077 0.923 32 H 0.108 0.892 33 H 0.104 0.896 34 H 0.086 0.914 35 H 0.228 0.772 36 H 0.128 0.872 37 H 0.135 0.865 38 H 0.077 0.923 39 H 0.145 0.855 40 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -18.931 5.450 -5.548 20.466 hybrid contribution 0.183 -1.341 -0.402 1.412 sum -18.747 4.109 -5.950 20.093 Atomic orbital electron populations 1.21807 0.95623 1.01831 1.01785 1.21388 0.95616 0.95001 1.02824 1.23030 0.95159 0.97786 0.98896 0.88871 1.23614 0.92791 0.90382 0.95720 1.88917 1.21782 1.36158 1.83085 1.23988 0.87814 0.96619 0.96711 1.21999 0.91836 0.84925 0.98859 0.89076 1.44351 1.17781 1.19548 1.56926 1.17385 0.86474 0.94735 0.99110 1.20189 0.95383 0.99332 1.01791 1.20030 0.95898 0.96543 1.04543 1.19248 0.86808 0.93610 0.94103 1.83989 1.25536 1.32358 1.67370 1.21236 1.05966 0.89148 1.30089 0.89441 1.25218 0.95694 0.99601 0.96145 1.70043 1.13684 1.36303 1.30448 0.85765 0.79017 0.80732 0.78200 1.20043 1.20390 1.19357 1.20990 0.95732 1.01701 1.02595 1.20213 0.96553 0.95658 1.03726 0.92781 0.92557 0.92615 0.91799 0.90802 0.92308 0.89186 0.89575 0.91379 0.77229 0.87183 0.86501 0.92272 0.85496 0.87690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.01 9.81 37.15 0.36 -0.65 16 2 C -0.11 -0.88 4.43 -26.73 -0.12 -1.00 16 3 C -0.13 -1.13 3.07 -88.61 -0.27 -1.41 16 4 H 0.09 0.77 8.14 -51.93 -0.42 0.34 16 5 C 0.05 0.47 6.63 38.21 0.25 0.72 16 6 O -0.38 -4.61 11.53 -35.23 -0.41 -5.01 16 7 C 0.03 0.32 7.52 37.73 0.28 0.60 16 8 C 0.13 1.45 2.93 -66.41 -0.19 1.25 16 9 H 0.09 1.04 6.51 -51.93 -0.34 0.70 16 10 N -0.75 -9.43 4.65 -50.65 -0.24 -9.67 16 11 C 0.12 1.99 6.66 -83.71 -0.56 1.43 16 12 C -0.14 -2.54 9.21 -39.40 -0.36 -2.91 16 13 C -0.15 -3.16 9.98 -39.42 -0.39 -3.56 16 14 C 0.11 2.79 6.65 -39.09 -0.26 2.53 16 15 O -0.19 -5.43 9.76 -0.05 0.00 -5.43 16 16 C -0.39 -10.99 9.48 30.88 0.29 -10.70 16 17 H 0.09 2.29 5.20 -52.49 -0.27 2.02 16 18 C 0.04 1.02 5.49 -17.52 -0.10 0.92 16 19 N -0.87 -25.94 13.67 55.48 0.76 -25.18 16 20 Si 0.94 20.86 29.55 -169.99 -5.02 15.84 16 21 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 22 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 23 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 24 C -0.19 -4.12 9.16 -39.42 -0.36 -4.48 16 25 C -0.14 -2.51 9.89 -39.40 -0.39 -2.90 16 26 H 0.05 0.32 7.73 -51.93 -0.40 -0.08 16 27 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 29 H 0.06 0.50 6.47 -51.93 -0.34 0.17 16 30 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 31 H 0.06 0.52 7.93 -51.93 -0.41 0.11 16 32 H 0.09 0.68 8.14 -51.93 -0.42 0.25 16 33 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 34 H 0.07 0.88 7.93 -51.93 -0.41 0.47 16 35 H 0.39 4.39 6.50 -40.82 -0.27 4.13 16 36 H 0.11 1.64 6.25 -52.48 -0.33 1.31 16 37 H 0.12 2.38 8.06 -52.49 -0.42 1.96 16 38 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 39 H 0.13 2.77 5.63 -52.49 -0.30 2.47 16 40 H 0.11 1.61 8.06 -52.49 -0.42 1.19 16 LS Contribution 324.82 15.07 4.89 4.89 Total: -1.00 -31.18 324.82 -7.40 -38.58 By element: Atomic # 1 Polarization: 11.70 SS G_CDS: -5.58 Total: 6.12 kcal Atomic # 6 Polarization: -18.33 SS G_CDS: -1.81 Total: -20.14 kcal Atomic # 7 Polarization: -35.37 SS G_CDS: 0.52 Total: -34.85 kcal Atomic # 8 Polarization: -10.03 SS G_CDS: -0.41 Total: -10.44 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.84 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -31.18 -7.40 -38.58 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000699438291.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.178 kcal (2) G-P(sol) polarization free energy of solvation -31.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.578 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds