Wall clock time and date at job start Mon Mar 30 2020 02:50:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53002 * 109.47619 * 2 1 4 4 H 1.09000 * 110.82847 * 51.34960 * 3 2 1 5 5 C 1.54994 * 110.90647 * 287.71032 * 3 2 1 6 6 O 1.44378 * 103.49016 * 204.77238 * 5 3 2 7 7 C 1.44054 * 106.97747 * 40.13909 * 6 5 3 8 8 C 1.54093 * 107.13687 * 333.37998 * 7 6 5 9 9 H 1.08995 * 110.49011 * 243.39013 * 8 7 6 10 10 N 1.46497 * 110.48736 * 120.87566 * 8 7 6 11 11 C 1.39784 * 119.99899 * 88.24418 * 10 8 7 12 12 C 1.38947 * 120.00893 * 359.72692 * 11 10 8 13 13 C 1.38008 * 119.99581 * 179.76953 * 12 11 10 14 14 C 1.38904 * 120.00426 * 0.50227 * 13 12 11 15 15 O 1.35799 * 119.99020 * 179.77064 * 14 13 12 16 16 C 1.34813 * 116.99428 * 174.43762 * 15 14 13 17 17 H 1.07996 * 120.00202 * 5.05095 * 16 15 14 18 18 C 1.38628 * 119.99670 * 185.05335 * 16 15 14 19 19 N 1.31574 * 119.99945 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 119.99786 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.46736 * 90.00063 * 20 18 16 22 22 H 1.48499 * 109.46874 * 209.99944 * 20 18 16 23 23 H 1.48496 * 109.47180 * 330.00103 * 20 18 16 24 24 C 1.38899 * 120.00966 * 359.74918 * 14 13 12 25 25 C 1.38008 * 120.00828 * 0.02562 * 24 14 13 26 26 H 1.08998 * 109.47275 * 59.99726 * 1 2 3 27 27 H 1.09000 * 109.47008 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47166 * 299.99651 * 1 2 3 29 29 H 1.09007 * 109.46869 * 240.00484 * 2 1 3 30 30 H 1.09005 * 109.47453 * 120.00659 * 2 1 3 31 31 H 1.09002 * 110.61868 * 323.27599 * 5 3 2 32 32 H 1.09001 * 110.62189 * 86.27006 * 5 3 2 33 33 H 1.09006 * 109.92206 * 214.01961 * 7 6 5 34 34 H 1.09000 * 109.98507 * 92.77513 * 7 6 5 35 35 H 0.97000 * 120.00010 * 268.24587 * 10 8 7 36 36 H 1.08004 * 120.00031 * 0.02562 * 12 11 10 37 37 H 1.07995 * 119.99636 * 180.23347 * 13 12 11 38 38 H 0.97000 * 120.00353 * 180.02562 * 19 18 16 39 39 H 1.08002 * 119.98889 * 179.97438 * 24 14 13 40 40 H 1.07995 * 119.99840 * 180.02562 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5694 2.0200 0.7956 5 6 1.8092 2.1108 -1.3793 6 8 2.8149 3.1457 -1.4246 7 6 4.0155 2.5909 -0.8537 8 6 3.5825 1.4831 0.1260 9 1 3.8754 1.7384 1.1443 10 7 4.1630 0.1964 -0.2659 11 6 5.4262 -0.1728 0.2050 12 6 6.1339 0.6828 1.0403 13 6 7.3791 0.3160 1.5089 14 6 7.9294 -0.9041 1.1372 15 8 9.1566 -1.2627 1.5948 16 6 9.5836 -2.5050 1.2918 17 1 8.9943 -3.1352 0.6422 18 6 10.7792 -2.9736 1.8141 19 7 11.4969 -2.2060 2.6059 20 14 11.3706 -4.6952 1.3948 21 1 12.2113 -4.6456 0.1717 22 1 12.1712 -5.2323 2.5243 23 1 10.1995 -5.5762 1.1551 24 6 7.2244 -1.7574 0.2981 25 6 5.9772 -1.3930 -0.1671 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8933 -0.5138 -0.8901 30 1 1.8934 -0.5139 0.8899 31 1 1.9616 1.3919 -2.1844 32 1 0.8103 2.5436 -1.4338 33 1 4.5645 3.3655 -0.3182 34 1 4.6404 2.1671 -1.6398 35 1 3.6708 -0.3993 -0.8522 36 1 5.7078 1.6332 1.3260 37 1 7.9275 0.9794 2.1611 38 1 12.3337 -2.5337 2.9711 39 1 7.6527 -2.7057 0.0090 40 1 5.4290 -2.0567 -0.8192 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000699438291.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:18 Heat of formation + Delta-G solvation = -63.876236 kcal Electronic energy + Delta-G solvation = -21146.452593 eV Core-core repulsion = 17926.064370 eV Total energy + Delta-G solvation = -3220.388223 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.19293 -40.40024 -38.44961 -36.11939 -34.73924 -33.98465 -31.91537 -30.72702 -29.15921 -28.36531 -26.96022 -24.84727 -23.96612 -22.90429 -22.48700 -20.77402 -19.58667 -18.91820 -18.21825 -17.24491 -16.88314 -16.42350 -16.24234 -16.02863 -15.50845 -15.37210 -15.21823 -14.90608 -14.45437 -14.11198 -14.03889 -13.81263 -13.72163 -13.44592 -13.15486 -12.91439 -12.74873 -12.56832 -12.38224 -12.20141 -12.09308 -11.86401 -11.62141 -11.36842 -11.07759 -10.92446 -10.68867 -10.21289 -9.77801 -8.39278 -7.96376 -6.03087 0.58634 0.92276 1.36906 1.46572 1.54258 2.22709 2.52432 2.90768 3.03130 3.24620 3.47960 3.66345 3.79351 3.86363 4.09663 4.15034 4.25004 4.27472 4.33771 4.48440 4.57045 4.57361 4.66215 4.75810 4.85054 4.89531 4.91732 4.96208 5.06509 5.12841 5.21883 5.26692 5.31476 5.44459 5.46921 5.55047 5.78512 5.84172 5.98459 6.11522 6.58422 6.98139 7.06668 7.93477 8.85263 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.034818 B = 0.003358 C = 0.003189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 803.979880 B = 8336.582064 C = 8777.231947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.108 4.108 3 C -0.119 4.119 4 H 0.104 0.896 5 C 0.048 3.952 6 O -0.398 6.398 7 C 0.029 3.971 8 C 0.126 3.874 9 H 0.093 0.907 10 N -0.733 5.733 11 C 0.152 3.848 12 C -0.143 4.143 13 C -0.156 4.156 14 C 0.063 3.937 15 O -0.243 6.243 16 C -0.406 4.406 17 H 0.099 0.901 18 C -0.028 4.028 19 N -0.927 5.927 20 Si 1.016 2.984 21 H -0.265 1.265 22 H -0.273 1.273 23 H -0.253 1.253 24 C -0.194 4.194 25 C -0.142 4.142 26 H 0.062 0.938 27 H 0.058 0.942 28 H 0.057 0.943 29 H 0.067 0.933 30 H 0.062 0.938 31 H 0.063 0.937 32 H 0.109 0.891 33 H 0.091 0.909 34 H 0.054 0.946 35 H 0.404 0.596 36 H 0.142 0.858 37 H 0.112 0.888 38 H 0.270 0.730 39 H 0.118 0.882 40 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.574 4.704 -7.217 24.162 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.146 4.146 3 C -0.138 4.138 4 H 0.122 0.878 5 C -0.028 4.028 6 O -0.317 6.317 7 C -0.050 4.050 8 C 0.019 3.981 9 H 0.111 0.889 10 N -0.369 5.369 11 C 0.052 3.948 12 C -0.165 4.165 13 C -0.176 4.176 14 C 0.014 3.986 15 O -0.151 6.151 16 C -0.483 4.483 17 H 0.116 0.884 18 C -0.224 4.224 19 N -0.567 5.567 20 Si 0.836 3.164 21 H -0.190 1.190 22 H -0.198 1.198 23 H -0.177 1.177 24 C -0.213 4.213 25 C -0.165 4.165 26 H 0.081 0.919 27 H 0.077 0.923 28 H 0.076 0.924 29 H 0.085 0.915 30 H 0.081 0.919 31 H 0.082 0.918 32 H 0.127 0.873 33 H 0.109 0.891 34 H 0.073 0.927 35 H 0.242 0.758 36 H 0.160 0.840 37 H 0.130 0.870 38 H 0.078 0.922 39 H 0.136 0.864 40 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -22.300 5.201 -6.989 23.941 hybrid contribution 0.817 -1.036 -0.079 1.322 sum -21.483 4.166 -7.068 22.996 Atomic orbital electron populations 1.21785 0.94411 1.02238 1.02390 1.21363 0.96695 0.94174 1.02383 1.22997 0.93069 0.98528 0.99173 0.87804 1.23810 0.93018 0.90096 0.95877 1.88913 1.22268 1.37341 1.83188 1.23910 0.87897 0.96819 0.96327 1.22175 0.93603 0.83627 0.98714 0.88869 1.44403 1.16100 1.20366 1.56023 1.17486 0.87262 0.93486 0.96553 1.20451 0.94006 1.00724 1.01360 1.20237 0.97173 0.95566 1.04581 1.19754 0.86721 0.95645 0.96494 1.83937 1.28253 1.32987 1.69894 1.21757 1.06565 0.89634 1.30342 0.88402 1.26526 0.95572 1.04444 0.95908 1.70200 1.14615 1.38962 1.32886 0.84617 0.78807 0.74764 0.78205 1.18973 1.19792 1.17680 1.21050 0.96966 1.01042 1.02286 1.20473 0.95376 0.96761 1.03845 0.91870 0.92327 0.92351 0.91470 0.91937 0.91840 0.87292 0.89099 0.92743 0.75842 0.84018 0.86969 0.92151 0.86387 0.84333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.46 9.81 71.98 0.71 -0.75 16 2 C -0.11 -1.33 4.43 30.59 0.14 -1.20 16 3 C -0.12 -1.63 3.07 -9.49 -0.03 -1.66 16 4 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16 5 C 0.05 0.70 6.63 72.66 0.48 1.18 16 6 O -0.40 -8.47 11.53 -148.98 -1.72 -10.19 16 7 C 0.03 0.60 7.52 72.35 0.54 1.14 16 8 C 0.13 2.33 2.93 45.98 0.13 2.46 16 9 H 0.09 1.77 6.51 -2.39 -0.02 1.76 16 10 N -0.73 -15.80 4.65 -314.16 -1.46 -17.26 16 11 C 0.15 4.62 6.66 38.21 0.25 4.88 16 12 C -0.14 -4.78 9.21 22.39 0.21 -4.57 16 13 C -0.16 -6.69 9.98 22.37 0.22 -6.46 16 14 C 0.06 3.20 6.65 22.59 0.15 3.35 16 15 O -0.24 -14.94 9.76 -23.11 -0.23 -15.17 16 16 C -0.41 -24.18 9.48 67.91 0.64 -23.53 16 17 H 0.10 5.33 5.20 -2.91 -0.02 5.32 16 18 C -0.03 -1.65 5.49 84.82 0.47 -1.18 16 19 N -0.93 -58.30 13.67 21.61 0.30 -58.00 16 20 Si 1.02 43.82 29.55 68.60 2.03 45.85 16 21 H -0.26 -10.85 7.11 99.48 0.71 -10.14 16 22 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 23 H -0.25 -10.09 7.11 99.48 0.71 -9.38 16 24 C -0.19 -8.46 9.16 22.37 0.20 -8.26 16 25 C -0.14 -4.82 9.89 22.39 0.22 -4.60 16 26 H 0.06 0.51 7.73 -2.39 -0.02 0.49 16 27 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 28 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 29 H 0.07 0.78 6.47 -2.38 -0.02 0.77 16 30 H 0.06 0.94 8.14 -2.38 -0.02 0.92 16 31 H 0.06 0.88 7.93 -2.39 -0.02 0.86 16 32 H 0.11 1.19 8.14 -2.39 -0.02 1.17 16 33 H 0.09 1.78 8.14 -2.38 -0.02 1.76 16 34 H 0.05 1.27 7.93 -2.39 -0.02 1.26 16 35 H 0.40 7.34 6.50 -92.71 -0.60 6.74 16 36 H 0.14 3.80 6.25 -2.91 -0.02 3.78 16 37 H 0.11 4.79 8.06 -2.91 -0.02 4.76 16 38 H 0.27 15.55 8.31 -92.71 -0.77 14.78 16 39 H 0.12 5.26 5.63 -2.91 -0.02 5.25 16 40 H 0.14 3.75 8.06 -2.91 -0.02 3.72 16 Total: -1.00 -72.19 324.82 3.71 -68.48 By element: Atomic # 1 Polarization: 25.05 SS G_CDS: 0.45 Total: 25.49 kcal Atomic # 6 Polarization: -43.55 SS G_CDS: 4.34 Total: -39.21 kcal Atomic # 7 Polarization: -74.09 SS G_CDS: -1.17 Total: -75.26 kcal Atomic # 8 Polarization: -23.42 SS G_CDS: -1.94 Total: -25.36 kcal Atomic # 14 Polarization: 43.82 SS G_CDS: 2.03 Total: 45.85 kcal Total: -72.19 3.71 -68.48 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000699438291.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.606 kcal (2) G-P(sol) polarization free energy of solvation -72.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.585 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.483 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds