Wall clock time and date at job start Mon Mar 30 2020 02:50:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.46882 * 2 1 4 4 H 1.09001 * 110.83586 * 308.64790 * 3 2 1 5 5 C 1.55352 * 111.00542 * 72.43260 * 3 2 1 6 6 O 1.44383 * 103.49920 * 155.20854 * 5 3 2 7 7 C 1.43742 * 106.97306 * 319.90510 * 6 5 3 8 8 C 1.54096 * 107.29608 * 26.51495 * 7 6 5 9 9 H 1.09002 * 110.48552 * 116.78163 * 8 7 6 10 10 N 1.46495 * 110.49037 * 239.29054 * 8 7 6 11 11 C 1.39779 * 120.00544 * 271.75871 * 10 8 7 12 12 C 1.38954 * 120.00900 * 179.97438 * 11 10 8 13 13 C 1.38009 * 119.99292 * 179.97438 * 12 11 10 14 14 C 1.38906 * 120.00607 * 0.02562 * 13 12 11 15 15 O 1.35796 * 119.99078 * 179.97438 * 14 13 12 16 16 C 1.34813 * 116.99754 * 174.48042 * 15 14 13 17 17 H 1.08000 * 120.00228 * 5.05103 * 16 15 14 18 18 C 1.38620 * 120.00007 * 185.05372 * 16 15 14 19 19 N 1.31585 * 120.00204 * 359.97438 * 18 16 15 20 20 Si 1.86798 * 120.00110 * 179.97438 * 18 16 15 21 21 H 1.48499 * 109.47343 * 60.00301 * 20 18 16 22 22 H 1.48502 * 109.47207 * 180.02562 * 20 18 16 23 23 H 1.48502 * 109.47222 * 300.00047 * 20 18 16 24 24 C 1.38894 * 120.01372 * 359.97438 * 14 13 12 25 25 C 1.38008 * 120.00434 * 0.02562 * 24 14 13 26 26 H 1.08996 * 109.47605 * 299.99761 * 1 2 3 27 27 H 1.08999 * 109.47077 * 60.00393 * 1 2 3 28 28 H 1.09004 * 109.46931 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.46902 * 239.99985 * 2 1 3 30 30 H 1.08994 * 109.46943 * 120.00042 * 2 1 3 31 31 H 1.09000 * 110.63958 * 36.68754 * 5 3 2 32 32 H 1.08996 * 110.71785 * 273.76058 * 5 3 2 33 33 H 1.09004 * 109.87861 * 267.08929 * 7 6 5 34 34 H 1.09000 * 110.00208 * 146.01329 * 7 6 5 35 35 H 0.97003 * 120.00199 * 91.75368 * 10 8 7 36 36 H 1.07993 * 120.00417 * 359.69977 * 12 11 10 37 37 H 1.07998 * 119.99625 * 179.97438 * 13 12 11 38 38 H 0.96997 * 120.00302 * 179.97438 * 19 18 16 39 39 H 1.08002 * 119.99891 * 180.02562 * 24 14 13 40 40 H 1.08008 * 120.00446 * 180.02562 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5693 2.0201 -0.7956 5 6 1.8129 2.1134 1.3826 6 8 2.8193 3.1478 1.4247 7 6 4.0151 2.5933 0.8512 8 6 3.5824 1.4832 -0.1260 9 1 3.8754 1.7363 -1.1449 10 7 4.1632 0.1975 0.2688 11 6 5.4265 -0.1726 -0.2012 12 6 5.9777 -1.3918 0.1737 13 6 7.2249 -1.7571 -0.2910 14 6 7.9293 -0.9058 -1.1328 15 8 9.1566 -1.2653 -1.5894 16 6 9.7372 -0.4490 -2.4916 17 1 9.2644 0.4847 -2.7580 18 6 10.9411 -0.8081 -3.0774 19 7 11.5175 -1.9456 -2.7526 20 14 11.7453 0.3226 -4.3281 21 1 12.0314 1.6357 -3.6963 22 1 13.0141 -0.2862 -4.8020 23 1 10.8293 0.5170 -5.4807 24 6 7.3785 0.3129 -1.5076 25 6 6.1315 0.6787 -1.0433 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8899 31 1 1.9665 1.3952 2.1881 32 1 0.8145 2.5467 1.4416 33 1 4.6421 2.1718 1.6370 34 1 4.5642 3.3666 0.3140 35 1 3.6711 -0.3970 0.8565 36 1 5.4322 -2.0515 0.8321 37 1 7.6535 -2.7045 0.0007 38 1 12.3597 -2.1970 -3.1628 39 1 7.9263 0.9744 -2.1625 40 1 5.7030 1.6263 -1.3351 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000699438294.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:22 Heat of formation + Delta-G solvation = -43.659420 kcal Electronic energy + Delta-G solvation = -21183.775584 eV Core-core repulsion = 17964.264028 eV Total energy + Delta-G solvation = -3219.511556 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.17483 -38.82688 -36.85467 -35.14490 -33.58692 -32.05315 -30.30050 -29.69898 -28.38970 -26.76204 -25.12333 -24.12889 -22.68001 -21.69439 -21.10389 -19.60593 -17.99522 -17.61131 -16.50632 -16.26080 -15.63193 -15.51813 -14.94894 -14.47161 -14.35146 -14.02634 -13.69256 -13.49778 -13.34598 -12.99990 -12.79065 -12.67840 -12.46021 -12.14275 -11.78137 -11.59168 -11.39522 -11.28271 -11.11479 -10.99297 -10.89628 -10.72170 -10.54187 -10.36847 -9.82167 -9.27559 -9.19284 -8.47227 -8.20015 -6.44341 -6.33390 -3.90866 2.17803 2.53547 3.18365 3.19319 3.21964 3.61003 3.89436 4.05356 4.26176 4.47847 4.61039 4.70658 4.94456 4.98714 5.08340 5.16206 5.19859 5.20907 5.39815 5.46560 5.51794 5.59863 5.62449 5.74206 5.75306 5.77285 5.82206 5.93777 6.01909 6.19187 6.25996 6.45134 6.67380 6.81441 6.95800 7.07487 7.31929 7.43542 7.58860 7.93666 8.10461 8.18210 9.12423 9.86350 10.85255 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.030316 B = 0.003485 C = 0.003326 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 923.382929 B = 8032.956780 C = 8416.307280 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.110 4.110 3 C -0.129 4.129 4 H 0.093 0.907 5 C 0.052 3.948 6 O -0.380 6.380 7 C 0.027 3.973 8 C 0.131 3.869 9 H 0.091 0.909 10 N -0.749 5.749 11 C 0.120 3.880 12 C -0.141 4.141 13 C -0.149 4.149 14 C 0.115 3.885 15 O -0.187 6.187 16 C -0.388 4.388 17 H 0.088 0.912 18 C 0.037 3.963 19 N -0.869 5.869 20 Si 0.938 3.062 21 H -0.271 1.271 22 H -0.279 1.279 23 H -0.271 1.271 24 C -0.191 4.191 25 C -0.143 4.143 26 H 0.053 0.947 27 H 0.055 0.945 28 H 0.055 0.945 29 H 0.073 0.927 30 H 0.064 0.936 31 H 0.059 0.941 32 H 0.090 0.910 33 H 0.067 0.933 34 H 0.085 0.915 35 H 0.392 0.608 36 H 0.109 0.891 37 H 0.117 0.883 38 H 0.268 0.732 39 H 0.127 0.873 40 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.249 5.705 5.383 20.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.148 4.148 3 C -0.148 4.148 4 H 0.111 0.889 5 C -0.025 4.025 6 O -0.299 6.299 7 C -0.051 4.051 8 C 0.024 3.976 9 H 0.109 0.891 10 N -0.386 5.386 11 C 0.023 3.977 12 C -0.163 4.163 13 C -0.169 4.169 14 C 0.062 3.938 15 O -0.092 6.092 16 C -0.465 4.465 17 H 0.105 0.895 18 C -0.166 4.166 19 N -0.505 5.505 20 Si 0.763 3.237 21 H -0.196 1.196 22 H -0.204 1.204 23 H -0.197 1.197 24 C -0.211 4.211 25 C -0.165 4.165 26 H 0.072 0.928 27 H 0.074 0.926 28 H 0.074 0.926 29 H 0.092 0.908 30 H 0.082 0.918 31 H 0.077 0.923 32 H 0.108 0.892 33 H 0.085 0.915 34 H 0.104 0.896 35 H 0.228 0.772 36 H 0.128 0.872 37 H 0.135 0.865 38 H 0.078 0.922 39 H 0.144 0.856 40 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -18.895 5.755 5.361 20.467 hybrid contribution 0.297 0.247 -0.529 0.655 sum -18.598 6.002 4.832 20.131 Atomic orbital electron populations 1.21809 0.95626 1.01826 1.01786 1.21380 0.95611 0.94980 1.02822 1.23086 0.95140 0.97779 0.98844 0.88876 1.23679 0.92759 0.90373 0.95707 1.88865 1.21908 1.36200 1.82883 1.23923 0.87881 0.96622 0.96689 1.22000 0.91839 0.84937 0.98861 0.89110 1.44339 1.17761 1.19668 1.56810 1.17386 0.86516 0.94815 0.99009 1.20097 0.96279 0.95902 1.04056 1.20009 0.94705 1.00039 1.02176 1.19246 0.86939 0.92731 0.94869 1.83986 1.24266 1.47719 1.53260 1.21188 1.04779 1.01603 1.18896 0.89494 1.25215 0.96188 0.97022 0.98205 1.70037 1.17563 1.21122 1.41796 0.85839 0.78595 0.79331 0.79969 1.19650 1.20406 1.19667 1.21003 0.96616 0.98166 1.05328 1.20305 0.95664 0.99269 1.01267 0.92782 0.92623 0.92553 0.90799 0.91784 0.92299 0.89196 0.91451 0.89631 0.77233 0.87248 0.86456 0.92220 0.85552 0.87610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.01 9.81 37.16 0.36 -0.65 16 2 C -0.11 -0.88 4.44 -26.73 -0.12 -1.00 16 3 C -0.13 -1.14 3.08 -88.42 -0.27 -1.42 16 4 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 5 C 0.05 0.47 6.66 38.41 0.26 0.73 16 6 O -0.38 -4.65 11.52 -35.23 -0.41 -5.06 16 7 C 0.03 0.33 7.50 37.73 0.28 0.61 16 8 C 0.13 1.47 2.94 -66.41 -0.20 1.28 16 9 H 0.09 1.07 6.50 -51.93 -0.34 0.73 16 10 N -0.75 -9.43 4.65 -50.64 -0.24 -9.67 16 11 C 0.12 1.99 6.66 -83.70 -0.56 1.43 16 12 C -0.14 -2.47 9.89 -39.40 -0.39 -2.86 16 13 C -0.15 -3.14 9.98 -39.42 -0.39 -3.53 16 14 C 0.11 2.78 6.65 -39.09 -0.26 2.52 16 15 O -0.19 -5.42 9.76 -0.04 0.00 -5.42 16 16 C -0.39 -11.01 9.48 30.87 0.29 -10.72 16 17 H 0.09 2.28 5.20 -52.49 -0.27 2.00 16 18 C 0.04 1.03 5.49 -17.52 -0.10 0.93 16 19 N -0.87 -25.97 13.67 55.48 0.76 -25.21 16 20 Si 0.94 20.88 29.55 -169.99 -5.02 15.86 16 21 H -0.27 -5.85 7.11 56.52 0.40 -5.44 16 22 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 23 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 24 C -0.19 -4.15 9.16 -39.42 -0.36 -4.51 16 25 C -0.14 -2.58 9.21 -39.40 -0.36 -2.95 16 26 H 0.05 0.32 7.74 -51.93 -0.40 -0.08 16 27 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 28 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.06 0.49 6.48 -51.93 -0.34 0.16 16 31 H 0.06 0.52 7.94 -51.93 -0.41 0.10 16 32 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.07 0.88 7.93 -51.93 -0.41 0.47 16 34 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 35 H 0.39 4.33 6.51 -40.82 -0.27 4.06 16 36 H 0.11 1.59 8.06 -52.49 -0.42 1.17 16 37 H 0.12 2.38 8.06 -52.49 -0.42 1.96 16 38 H 0.27 7.37 8.31 -40.82 -0.34 7.04 16 39 H 0.13 2.76 5.63 -52.49 -0.30 2.46 16 40 H 0.11 1.66 6.24 -52.48 -0.33 1.33 16 LS Contribution 324.86 15.07 4.90 4.90 Total: -1.00 -31.18 324.86 -7.40 -38.58 By element: Atomic # 1 Polarization: 11.71 SS G_CDS: -5.58 Total: 6.14 kcal Atomic # 6 Polarization: -18.31 SS G_CDS: -1.81 Total: -20.12 kcal Atomic # 7 Polarization: -35.40 SS G_CDS: 0.52 Total: -34.87 kcal Atomic # 8 Polarization: -10.07 SS G_CDS: -0.41 Total: -10.48 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.86 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -31.18 -7.40 -38.58 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000699438294.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.077 kcal (2) G-P(sol) polarization free energy of solvation -31.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.582 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds