Wall clock time and date at job start Mon Mar 30 2020 02:50:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.46882 * 2 1 4 4 H 1.09001 * 110.83586 * 308.64790 * 3 2 1 5 5 C 1.55352 * 111.00542 * 72.43260 * 3 2 1 6 6 O 1.44383 * 103.49920 * 155.20854 * 5 3 2 7 7 C 1.43742 * 106.97306 * 319.90510 * 6 5 3 8 8 C 1.54096 * 107.29608 * 26.51495 * 7 6 5 9 9 H 1.09002 * 110.48552 * 116.78163 * 8 7 6 10 10 N 1.46495 * 110.49037 * 239.29054 * 8 7 6 11 11 C 1.39779 * 120.00544 * 271.75871 * 10 8 7 12 12 C 1.38954 * 120.00900 * 179.97438 * 11 10 8 13 13 C 1.38009 * 119.99292 * 179.97438 * 12 11 10 14 14 C 1.38906 * 120.00607 * 0.02562 * 13 12 11 15 15 O 1.35796 * 119.99078 * 179.97438 * 14 13 12 16 16 C 1.34813 * 116.99754 * 174.48042 * 15 14 13 17 17 H 1.08000 * 120.00228 * 5.05103 * 16 15 14 18 18 C 1.38620 * 120.00007 * 185.05372 * 16 15 14 19 19 N 1.31585 * 120.00204 * 359.97438 * 18 16 15 20 20 Si 1.86798 * 120.00110 * 179.97438 * 18 16 15 21 21 H 1.48499 * 109.47343 * 60.00301 * 20 18 16 22 22 H 1.48502 * 109.47207 * 180.02562 * 20 18 16 23 23 H 1.48502 * 109.47222 * 300.00047 * 20 18 16 24 24 C 1.38894 * 120.01372 * 359.97438 * 14 13 12 25 25 C 1.38008 * 120.00434 * 0.02562 * 24 14 13 26 26 H 1.08996 * 109.47605 * 299.99761 * 1 2 3 27 27 H 1.08999 * 109.47077 * 60.00393 * 1 2 3 28 28 H 1.09004 * 109.46931 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.46902 * 239.99985 * 2 1 3 30 30 H 1.08994 * 109.46943 * 120.00042 * 2 1 3 31 31 H 1.09000 * 110.63958 * 36.68754 * 5 3 2 32 32 H 1.08996 * 110.71785 * 273.76058 * 5 3 2 33 33 H 1.09004 * 109.87861 * 267.08929 * 7 6 5 34 34 H 1.09000 * 110.00208 * 146.01329 * 7 6 5 35 35 H 0.97003 * 120.00199 * 91.75368 * 10 8 7 36 36 H 1.07993 * 120.00417 * 359.69977 * 12 11 10 37 37 H 1.07998 * 119.99625 * 179.97438 * 13 12 11 38 38 H 0.96997 * 120.00302 * 179.97438 * 19 18 16 39 39 H 1.08002 * 119.99891 * 180.02562 * 24 14 13 40 40 H 1.08008 * 120.00446 * 180.02562 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5693 2.0201 -0.7956 5 6 1.8129 2.1134 1.3826 6 8 2.8193 3.1478 1.4247 7 6 4.0151 2.5933 0.8512 8 6 3.5824 1.4832 -0.1260 9 1 3.8754 1.7363 -1.1449 10 7 4.1632 0.1975 0.2688 11 6 5.4265 -0.1726 -0.2012 12 6 5.9777 -1.3918 0.1737 13 6 7.2249 -1.7571 -0.2910 14 6 7.9293 -0.9058 -1.1328 15 8 9.1566 -1.2653 -1.5894 16 6 9.7372 -0.4490 -2.4916 17 1 9.2644 0.4847 -2.7580 18 6 10.9411 -0.8081 -3.0774 19 7 11.5175 -1.9456 -2.7526 20 14 11.7453 0.3226 -4.3281 21 1 12.0314 1.6357 -3.6963 22 1 13.0141 -0.2862 -4.8020 23 1 10.8293 0.5170 -5.4807 24 6 7.3785 0.3129 -1.5076 25 6 6.1315 0.6787 -1.0433 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8899 31 1 1.9665 1.3952 2.1881 32 1 0.8145 2.5467 1.4416 33 1 4.6421 2.1718 1.6370 34 1 4.5642 3.3666 0.3140 35 1 3.6711 -0.3970 0.8565 36 1 5.4322 -2.0515 0.8321 37 1 7.6535 -2.7045 0.0007 38 1 12.3597 -2.1970 -3.1628 39 1 7.9263 0.9744 -2.1625 40 1 5.7030 1.6263 -1.3351 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000699438294.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:21 Heat of formation + Delta-G solvation = -63.798049 kcal Electronic energy + Delta-G solvation = -21184.648861 eV Core-core repulsion = 17964.264028 eV Total energy + Delta-G solvation = -3220.384833 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.20039 -40.40072 -38.45130 -36.13876 -34.74409 -33.97874 -31.84078 -30.83415 -29.17791 -28.23418 -27.04979 -24.83669 -23.99170 -22.94506 -22.42578 -20.58495 -19.83810 -19.09697 -17.93125 -17.27739 -16.85931 -16.41515 -16.22210 -16.05327 -15.63869 -15.35400 -15.13662 -15.02800 -14.36602 -14.21813 -14.04308 -13.81373 -13.65626 -13.44831 -13.09775 -12.90286 -12.75453 -12.58285 -12.37651 -12.21752 -12.11890 -11.86007 -11.64478 -11.38679 -11.06074 -10.91632 -10.69013 -10.20977 -9.77720 -8.39268 -7.96253 -6.03164 0.58891 0.92463 1.36685 1.47735 1.52675 2.22777 2.52363 2.90724 3.02836 3.24559 3.47208 3.68263 3.77123 3.85771 4.06954 4.16016 4.25039 4.27421 4.33063 4.48704 4.57196 4.57532 4.71322 4.73073 4.84715 4.85642 4.90636 4.98047 5.07218 5.12017 5.22203 5.25135 5.30263 5.44802 5.50428 5.55104 5.78358 5.84547 5.98121 6.11226 6.57934 6.99411 7.06584 7.93293 8.85016 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.030316 B = 0.003485 C = 0.003326 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 923.382929 B = 8032.956780 C = 8416.307280 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.108 4.108 3 C -0.118 4.118 4 H 0.103 0.897 5 C 0.048 3.952 6 O -0.397 6.397 7 C 0.029 3.971 8 C 0.126 3.874 9 H 0.090 0.910 10 N -0.732 5.732 11 C 0.152 3.848 12 C -0.138 4.138 13 C -0.155 4.155 14 C 0.063 3.937 15 O -0.242 6.242 16 C -0.407 4.407 17 H 0.098 0.902 18 C -0.028 4.028 19 N -0.927 5.927 20 Si 1.015 2.985 21 H -0.258 1.258 22 H -0.273 1.273 23 H -0.258 1.258 24 C -0.195 4.195 25 C -0.147 4.147 26 H 0.062 0.938 27 H 0.057 0.943 28 H 0.058 0.942 29 H 0.062 0.938 30 H 0.068 0.932 31 H 0.065 0.935 32 H 0.109 0.891 33 H 0.054 0.946 34 H 0.088 0.912 35 H 0.405 0.595 36 H 0.148 0.852 37 H 0.114 0.886 38 H 0.270 0.730 39 H 0.117 0.883 40 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.397 7.224 5.746 24.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.146 4.146 3 C -0.137 4.137 4 H 0.121 0.879 5 C -0.028 4.028 6 O -0.316 6.316 7 C -0.049 4.049 8 C 0.019 3.981 9 H 0.108 0.892 10 N -0.368 5.368 11 C 0.052 3.948 12 C -0.160 4.160 13 C -0.175 4.175 14 C 0.014 3.986 15 O -0.150 6.150 16 C -0.484 4.484 17 H 0.115 0.885 18 C -0.224 4.224 19 N -0.566 5.566 20 Si 0.835 3.165 21 H -0.183 1.183 22 H -0.198 1.198 23 H -0.183 1.183 24 C -0.215 4.215 25 C -0.169 4.169 26 H 0.081 0.919 27 H 0.076 0.924 28 H 0.077 0.923 29 H 0.081 0.919 30 H 0.087 0.913 31 H 0.083 0.917 32 H 0.127 0.873 33 H 0.072 0.928 34 H 0.106 0.894 35 H 0.243 0.757 36 H 0.165 0.835 37 H 0.132 0.868 38 H 0.079 0.921 39 H 0.135 0.865 40 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -22.146 7.299 5.769 24.021 hybrid contribution 0.878 -0.176 -0.431 0.994 sum -21.268 7.122 5.337 23.055 Atomic orbital electron populations 1.21787 0.94410 1.02262 1.02365 1.21358 0.96691 0.94076 1.02446 1.23053 0.92962 0.98599 0.99116 0.87903 1.23881 0.92964 0.90091 0.95871 1.88861 1.22383 1.37416 1.82967 1.23834 0.87987 0.96772 0.96309 1.22158 0.93676 0.83721 0.98572 0.89162 1.44379 1.16082 1.20433 1.55928 1.17492 0.87281 0.93635 0.96430 1.20414 0.94968 0.96765 1.03875 1.20240 0.95879 0.99690 1.01663 1.19760 0.86818 0.94846 0.97217 1.83933 1.26834 1.49195 1.55061 1.21711 1.05366 1.02165 1.19131 0.88481 1.26515 0.96593 0.98861 1.00414 1.70196 1.18477 1.23766 1.44204 0.84693 0.77506 0.77195 0.77096 1.18274 1.19798 1.18266 1.21048 0.97904 0.97195 1.05307 1.20518 0.94445 1.00693 1.01277 0.91860 0.92424 0.92267 0.91931 0.91324 0.91713 0.87279 0.92770 0.89378 0.75721 0.83468 0.86799 0.92136 0.86542 0.84821 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.45 9.81 71.98 0.71 -0.74 16 2 C -0.11 -1.31 4.44 30.59 0.14 -1.18 16 3 C -0.12 -1.64 3.08 -9.37 -0.03 -1.67 16 4 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16 5 C 0.05 0.70 6.66 72.79 0.48 1.19 16 6 O -0.40 -8.58 11.52 -148.98 -1.72 -10.29 16 7 C 0.03 0.62 7.50 72.35 0.54 1.17 16 8 C 0.13 2.39 2.94 45.98 0.14 2.52 16 9 H 0.09 1.81 6.50 -2.39 -0.02 1.79 16 10 N -0.73 -15.76 4.65 -314.14 -1.46 -17.22 16 11 C 0.15 4.61 6.66 38.22 0.25 4.86 16 12 C -0.14 -4.53 9.89 22.39 0.22 -4.31 16 13 C -0.15 -6.60 9.98 22.38 0.22 -6.38 16 14 C 0.06 3.19 6.65 22.59 0.15 3.34 16 15 O -0.24 -14.92 9.76 -23.08 -0.23 -15.15 16 16 C -0.41 -24.28 9.48 67.91 0.64 -23.64 16 17 H 0.10 5.31 5.20 -2.91 -0.02 5.29 16 18 C -0.03 -1.61 5.49 84.82 0.47 -1.14 16 19 N -0.93 -58.32 13.67 21.61 0.30 -58.02 16 20 Si 1.02 43.91 29.55 68.60 2.03 45.94 16 21 H -0.26 -10.48 7.11 99.48 0.71 -9.78 16 22 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 23 H -0.26 -10.47 7.11 99.48 0.71 -9.76 16 24 C -0.19 -8.57 9.16 22.37 0.20 -8.37 16 25 C -0.15 -5.07 9.21 22.39 0.21 -4.86 16 26 H 0.06 0.50 7.74 -2.39 -0.02 0.48 16 27 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 28 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 29 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 30 H 0.07 0.77 6.48 -2.39 -0.02 0.76 16 31 H 0.06 0.88 7.94 -2.39 -0.02 0.86 16 32 H 0.11 1.20 8.14 -2.39 -0.02 1.18 16 33 H 0.05 1.29 7.93 -2.38 -0.02 1.27 16 34 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 35 H 0.40 7.18 6.51 -92.71 -0.60 6.57 16 36 H 0.15 3.70 8.06 -2.91 -0.02 3.68 16 37 H 0.11 4.80 8.06 -2.91 -0.02 4.78 16 38 H 0.27 15.60 8.31 -92.71 -0.77 14.83 16 39 H 0.12 5.24 5.63 -2.91 -0.02 5.23 16 40 H 0.13 3.82 6.24 -2.91 -0.02 3.81 16 Total: -1.00 -72.28 324.86 3.71 -68.57 By element: Atomic # 1 Polarization: 24.93 SS G_CDS: 0.45 Total: 25.37 kcal Atomic # 6 Polarization: -43.55 SS G_CDS: 4.35 Total: -39.20 kcal Atomic # 7 Polarization: -74.07 SS G_CDS: -1.16 Total: -75.24 kcal Atomic # 8 Polarization: -23.50 SS G_CDS: -1.94 Total: -25.44 kcal Atomic # 14 Polarization: 43.91 SS G_CDS: 2.03 Total: 45.94 kcal Total: -72.28 3.71 -68.57 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000699438294.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.769 kcal (2) G-P(sol) polarization free energy of solvation -72.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.567 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds