Wall clock time and date at job start Mon Mar 30 2020 01:55:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52996 * 109.46907 * 2 1 4 4 C 1.52990 * 109.47134 * 120.00323 * 2 1 3 5 5 N 1.46501 * 109.47363 * 64.99945 * 4 2 1 6 6 C 1.46504 * 120.00126 * 269.99621 * 5 4 2 7 7 C 1.50700 * 109.47114 * 270.00392 * 6 5 4 8 8 H 1.07997 * 119.99862 * 359.97438 * 7 6 5 9 9 C 1.37872 * 119.99546 * 179.97438 * 7 6 5 10 10 N 1.31511 * 120.00450 * 359.97438 * 9 7 6 11 11 Si 1.86800 * 119.99945 * 179.97438 * 9 7 6 12 12 H 1.48498 * 109.47360 * 89.99647 * 11 9 7 13 13 H 1.48501 * 109.47362 * 210.00058 * 11 9 7 14 14 H 1.48508 * 109.47087 * 329.99729 * 11 9 7 15 15 C 1.34776 * 120.00026 * 89.99963 * 5 4 2 16 16 O 1.21775 * 120.00326 * 179.97438 * 15 5 4 17 17 C 1.41559 * 119.99899 * 0.27859 * 15 5 4 18 18 C 1.35623 * 119.99592 * 186.00645 * 17 15 5 19 19 C 1.41600 * 120.00686 * 8.82023 * 18 17 15 20 20 C 1.37955 * 126.10479 * 219.85284 * 19 18 17 21 21 C 1.40316 * 106.52697 * 179.84863 * 20 19 18 22 22 C 1.35159 * 107.20837 * 0.40349 * 21 20 19 23 23 O 1.34026 * 109.03199 * 359.74473 * 22 21 20 24 24 H 1.08998 * 109.46877 * 299.99949 * 1 2 3 25 25 H 1.08998 * 109.47405 * 60.00069 * 1 2 3 26 26 H 1.09004 * 109.46946 * 179.97438 * 1 2 3 27 27 H 1.09005 * 109.46815 * 240.00421 * 2 1 3 28 28 H 1.08997 * 109.47383 * 180.02562 * 3 2 1 29 29 H 1.08999 * 109.47551 * 300.00212 * 3 2 1 30 30 H 1.08998 * 109.47310 * 60.00316 * 3 2 1 31 31 H 1.08996 * 109.47510 * 304.99813 * 4 2 1 32 32 H 1.09000 * 109.47158 * 185.00117 * 4 2 1 33 33 H 1.08999 * 109.46745 * 30.00246 * 6 5 4 34 34 H 1.08993 * 109.46620 * 149.99899 * 6 5 4 35 35 H 0.97005 * 120.00398 * 180.02562 * 10 9 7 36 36 H 1.07995 * 120.00125 * 5.99829 * 17 15 5 37 37 H 1.08008 * 119.99320 * 188.82043 * 18 17 15 38 38 H 1.07994 * 126.73651 * 359.95911 * 20 19 18 39 39 H 1.08004 * 126.39835 * 180.15015 * 21 20 19 40 40 H 1.07997 * 125.48576 * 179.72054 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2491 5 7 1.6525 -2.1329 1.1904 6 6 0.3746 -2.5660 1.7612 7 6 0.5718 -2.9409 3.2075 8 1 1.5511 -2.8645 3.6564 9 6 -0.4980 -3.3813 3.9574 10 7 -1.6906 -3.4738 3.4108 11 14 -0.2536 -3.8467 5.7499 12 1 -0.4652 -2.6512 6.6050 13 1 -1.2286 -4.9022 6.1247 14 1 1.1274 -4.3566 5.9451 15 6 2.4716 -3.0330 0.6114 16 8 2.1497 -4.2065 0.5630 17 6 3.7090 -2.6155 0.0652 18 6 4.4773 -3.4953 -0.6240 19 6 3.9649 -4.7721 -0.9589 20 6 4.6607 -5.9627 -0.9214 21 6 3.7636 -6.9623 -1.3275 22 6 2.5863 -6.3566 -1.5994 23 8 2.7102 -5.0407 -1.3769 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8934 -0.5138 -0.8901 28 1 3.1300 1.4426 -0.0005 29 1 1.6767 1.9564 -0.8899 30 1 1.6767 1.9563 0.8900 31 1 1.6055 -0.2619 2.1369 32 1 3.1264 -0.6443 1.2951 33 1 -0.3483 -1.7533 1.6918 34 1 0.0044 -3.4298 1.2091 35 1 -2.4434 -3.7833 3.9386 36 1 4.0411 -1.5964 0.1972 37 1 5.4802 -3.2219 -0.9175 38 1 5.6927 -6.0990 -0.6340 39 1 3.9755 -8.0180 -1.4116 40 1 1.6902 -6.8529 -1.9412 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000700872622.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:28 Heat of formation + Delta-G solvation = 0.639348 kcal Electronic energy + Delta-G solvation = -22071.831195 eV Core-core repulsion = 18854.240578 eV Total energy + Delta-G solvation = -3217.590617 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.98147 -39.30401 -36.42162 -33.95866 -33.25033 -32.41400 -32.25005 -28.90412 -27.45558 -26.79795 -25.48088 -24.03701 -21.99866 -21.26067 -20.29211 -19.90635 -18.19180 -17.11514 -16.48766 -16.28758 -15.41955 -15.33618 -14.49741 -14.40517 -14.31512 -13.68870 -13.44299 -13.21458 -12.78641 -12.47436 -12.36891 -12.17893 -12.09432 -12.03479 -11.89746 -11.45528 -11.23902 -10.97643 -10.88707 -10.64603 -10.45129 -10.21718 -10.09278 -9.74436 -9.50219 -9.43715 -8.88648 -8.38345 -7.66556 -7.44037 -6.00010 -4.04060 0.98040 2.54035 3.04940 3.31698 3.38375 3.43279 3.60818 4.09017 4.14797 4.49219 5.01744 5.09098 5.17764 5.22307 5.33247 5.35222 5.37914 5.43325 5.58175 5.76345 5.86801 5.92133 6.01709 6.04914 6.13125 6.19942 6.21295 6.29864 6.32980 6.34978 6.59320 6.61847 6.73840 6.88672 7.20064 7.51848 7.60725 7.64264 7.97285 8.30016 8.51256 8.96033 9.19672 9.60642 11.07584 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.011866 B = 0.007011 C = 0.004990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2359.146530 B = 3992.851092 C = 5609.631859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.114 4.114 3 C -0.143 4.143 4 C 0.114 3.886 5 N -0.589 5.589 6 C 0.244 3.756 7 C -0.523 4.523 8 H 0.055 0.945 9 C 0.061 3.939 10 N -0.895 5.895 11 Si 0.895 3.105 12 H -0.281 1.281 13 H -0.286 1.286 14 H -0.275 1.275 15 C 0.524 3.476 16 O -0.525 6.525 17 C -0.185 4.185 18 C -0.027 4.027 19 C 0.025 3.975 20 C -0.196 4.196 21 C -0.229 4.229 22 C -0.019 4.019 23 O -0.128 6.128 24 H 0.055 0.945 25 H 0.044 0.956 26 H 0.068 0.932 27 H 0.066 0.934 28 H 0.051 0.949 29 H 0.052 0.948 30 H 0.056 0.944 31 H 0.081 0.919 32 H 0.065 0.935 33 H 0.039 0.961 34 H 0.041 0.959 35 H 0.262 0.738 36 H 0.133 0.867 37 H 0.148 0.852 38 H 0.143 0.857 39 H 0.142 0.858 40 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.910 4.338 -10.203 15.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.134 4.134 3 C -0.201 4.201 4 C -0.010 4.010 5 N -0.319 5.319 6 C 0.125 3.875 7 C -0.562 4.562 8 H 0.074 0.926 9 C -0.141 4.141 10 N -0.535 5.535 11 Si 0.723 3.277 12 H -0.207 1.207 13 H -0.211 1.211 14 H -0.200 1.200 15 C 0.314 3.686 16 O -0.404 6.404 17 C -0.205 4.205 18 C -0.047 4.047 19 C -0.026 4.026 20 C -0.215 4.215 21 C -0.248 4.248 22 C -0.090 4.090 23 O -0.021 6.021 24 H 0.074 0.926 25 H 0.063 0.937 26 H 0.087 0.913 27 H 0.085 0.915 28 H 0.070 0.930 29 H 0.071 0.929 30 H 0.075 0.925 31 H 0.099 0.901 32 H 0.084 0.916 33 H 0.057 0.943 34 H 0.059 0.941 35 H 0.072 0.928 36 H 0.151 0.849 37 H 0.166 0.834 38 H 0.161 0.839 39 H 0.159 0.841 40 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges 10.271 3.904 -10.188 14.985 hybrid contribution 0.141 -0.378 1.255 1.318 sum 10.412 3.526 -8.933 14.165 Atomic orbital electron populations 1.21922 0.94659 1.03071 1.00875 1.21597 0.97120 0.95728 0.98908 1.21779 1.00476 0.96087 1.01746 1.21571 0.99008 0.82510 0.97919 1.48149 1.21658 1.06106 1.55994 1.19359 0.78770 0.96296 0.93115 1.21464 0.94971 1.44177 0.95590 0.92632 1.24912 0.95088 0.95503 0.98577 1.69929 0.99770 1.47267 1.36495 0.86540 0.78035 0.78182 0.84925 1.20678 1.21136 1.19963 1.16982 0.84853 0.86458 0.80338 1.90834 1.74553 1.16791 1.58219 1.22693 0.97277 1.00297 1.00266 1.20503 0.98692 0.89476 0.96060 1.19554 0.82536 0.95246 1.05241 1.22023 1.00664 0.91657 1.07177 1.21524 0.94233 1.00187 1.08857 1.24069 0.99856 0.81370 1.03709 1.84311 1.29402 1.25306 1.63074 0.92561 0.93690 0.91270 0.91508 0.92964 0.92877 0.92518 0.90051 0.91631 0.94282 0.94091 0.92826 0.84914 0.83424 0.83898 0.84057 0.78893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.32 8.18 37.16 0.30 -2.02 16 2 C -0.11 -1.60 3.13 -90.62 -0.28 -1.89 16 3 C -0.14 -1.56 9.19 37.16 0.34 -1.22 16 4 C 0.11 1.88 4.63 -4.05 -0.02 1.86 16 5 N -0.59 -12.61 2.28 -178.50 -0.41 -13.02 16 6 C 0.24 6.40 4.23 -5.19 -0.02 6.38 16 7 C -0.52 -15.06 9.39 -34.44 -0.32 -15.39 16 8 H 0.06 1.61 7.81 -52.49 -0.41 1.20 16 9 C 0.06 1.76 5.46 -17.82 -0.10 1.67 16 10 N -0.90 -26.86 13.29 55.43 0.74 -26.12 16 11 Si 0.90 22.27 29.54 -169.99 -5.02 17.25 16 12 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 13 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 14 H -0.27 -6.86 7.11 56.52 0.40 -6.45 16 15 C 0.52 11.29 7.25 -14.99 -0.11 11.18 16 16 O -0.52 -13.41 11.98 -19.72 -0.24 -13.65 16 17 C -0.18 -2.97 9.15 -39.25 -0.36 -3.33 16 18 C -0.03 -0.40 9.95 -39.24 -0.39 -0.79 16 19 C 0.02 0.43 5.32 -38.40 -0.20 0.23 16 20 C -0.20 -3.03 10.90 -38.90 -0.42 -3.46 16 21 C -0.23 -3.45 10.87 -39.90 -0.43 -3.89 16 22 C -0.02 -0.32 12.06 29.64 0.36 0.04 16 23 O -0.13 -2.49 7.81 -20.19 -0.16 -2.64 16 24 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 25 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 26 H 0.07 1.30 5.89 -51.93 -0.31 0.99 16 27 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 28 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.08 1.41 8.07 -51.93 -0.42 0.99 16 32 H 0.07 0.90 6.00 -51.93 -0.31 0.59 16 33 H 0.04 1.02 5.98 -51.93 -0.31 0.71 16 34 H 0.04 1.23 7.42 -51.93 -0.39 0.85 16 35 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 36 H 0.13 1.66 6.03 -52.49 -0.32 1.34 16 37 H 0.15 1.44 8.06 -52.48 -0.42 1.02 16 38 H 0.14 1.80 8.06 -52.49 -0.42 1.37 16 39 H 0.14 1.72 8.06 -52.48 -0.42 1.30 16 40 H 0.19 2.49 8.06 -52.49 -0.42 2.06 16 LS Contribution 332.52 15.07 5.01 5.01 Total: -1.00 -34.58 332.52 -7.56 -42.14 By element: Atomic # 1 Polarization: 7.46 SS G_CDS: -5.82 Total: 1.64 kcal Atomic # 6 Polarization: -8.95 SS G_CDS: -1.66 Total: -10.61 kcal Atomic # 7 Polarization: -39.47 SS G_CDS: 0.33 Total: -39.14 kcal Atomic # 8 Polarization: -15.90 SS G_CDS: -0.39 Total: -16.29 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -5.02 Total: 17.25 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -34.58 -7.56 -42.14 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000700872622.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.782 kcal (2) G-P(sol) polarization free energy of solvation -34.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.142 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds