Wall clock time and date at job start Mon Mar 30 2020 01:55:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52996 * 109.46907 * 2 1 4 4 C 1.52990 * 109.47134 * 120.00323 * 2 1 3 5 5 N 1.46501 * 109.47363 * 64.99945 * 4 2 1 6 6 C 1.46504 * 120.00126 * 269.99621 * 5 4 2 7 7 C 1.50700 * 109.47114 * 270.00392 * 6 5 4 8 8 H 1.07997 * 119.99862 * 359.97438 * 7 6 5 9 9 C 1.37872 * 119.99546 * 179.97438 * 7 6 5 10 10 N 1.31511 * 120.00450 * 359.97438 * 9 7 6 11 11 Si 1.86800 * 119.99945 * 179.97438 * 9 7 6 12 12 H 1.48498 * 109.47360 * 89.99647 * 11 9 7 13 13 H 1.48501 * 109.47362 * 210.00058 * 11 9 7 14 14 H 1.48508 * 109.47087 * 329.99729 * 11 9 7 15 15 C 1.34776 * 120.00026 * 89.99963 * 5 4 2 16 16 O 1.21775 * 120.00326 * 179.97438 * 15 5 4 17 17 C 1.41559 * 119.99899 * 0.27859 * 15 5 4 18 18 C 1.35623 * 119.99592 * 186.00645 * 17 15 5 19 19 C 1.41600 * 120.00686 * 8.82023 * 18 17 15 20 20 C 1.37955 * 126.10479 * 219.85284 * 19 18 17 21 21 C 1.40316 * 106.52697 * 179.84863 * 20 19 18 22 22 C 1.35159 * 107.20837 * 0.40349 * 21 20 19 23 23 O 1.34026 * 109.03199 * 359.74473 * 22 21 20 24 24 H 1.08998 * 109.46877 * 299.99949 * 1 2 3 25 25 H 1.08998 * 109.47405 * 60.00069 * 1 2 3 26 26 H 1.09004 * 109.46946 * 179.97438 * 1 2 3 27 27 H 1.09005 * 109.46815 * 240.00421 * 2 1 3 28 28 H 1.08997 * 109.47383 * 180.02562 * 3 2 1 29 29 H 1.08999 * 109.47551 * 300.00212 * 3 2 1 30 30 H 1.08998 * 109.47310 * 60.00316 * 3 2 1 31 31 H 1.08996 * 109.47510 * 304.99813 * 4 2 1 32 32 H 1.09000 * 109.47158 * 185.00117 * 4 2 1 33 33 H 1.08999 * 109.46745 * 30.00246 * 6 5 4 34 34 H 1.08993 * 109.46620 * 149.99899 * 6 5 4 35 35 H 0.97005 * 120.00398 * 180.02562 * 10 9 7 36 36 H 1.07995 * 120.00125 * 5.99829 * 17 15 5 37 37 H 1.08008 * 119.99320 * 188.82043 * 18 17 15 38 38 H 1.07994 * 126.73651 * 359.95911 * 20 19 18 39 39 H 1.08004 * 126.39835 * 180.15015 * 21 20 19 40 40 H 1.07997 * 125.48576 * 179.72054 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2491 5 7 1.6525 -2.1329 1.1904 6 6 0.3746 -2.5660 1.7612 7 6 0.5718 -2.9409 3.2075 8 1 1.5511 -2.8645 3.6564 9 6 -0.4980 -3.3813 3.9574 10 7 -1.6906 -3.4738 3.4108 11 14 -0.2536 -3.8467 5.7499 12 1 -0.4652 -2.6512 6.6050 13 1 -1.2286 -4.9022 6.1247 14 1 1.1274 -4.3566 5.9451 15 6 2.4716 -3.0330 0.6114 16 8 2.1497 -4.2065 0.5630 17 6 3.7090 -2.6155 0.0652 18 6 4.4773 -3.4953 -0.6240 19 6 3.9649 -4.7721 -0.9589 20 6 4.6607 -5.9627 -0.9214 21 6 3.7636 -6.9623 -1.3275 22 6 2.5863 -6.3566 -1.5994 23 8 2.7102 -5.0407 -1.3769 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8934 -0.5138 -0.8901 28 1 3.1300 1.4426 -0.0005 29 1 1.6767 1.9564 -0.8899 30 1 1.6767 1.9563 0.8900 31 1 1.6055 -0.2619 2.1369 32 1 3.1264 -0.6443 1.2951 33 1 -0.3483 -1.7533 1.6918 34 1 0.0044 -3.4298 1.2091 35 1 -2.4434 -3.7833 3.9386 36 1 4.0411 -1.5964 0.1972 37 1 5.4802 -3.2219 -0.9175 38 1 5.6927 -6.0990 -0.6340 39 1 3.9755 -8.0180 -1.4116 40 1 1.6902 -6.8529 -1.9412 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000700872622.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:27 Heat of formation + Delta-G solvation = -19.793251 kcal Electronic energy + Delta-G solvation = -22072.717219 eV Core-core repulsion = 18854.240578 eV Total energy + Delta-G solvation = -3218.476641 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -43.23465 -40.87852 -37.84184 -35.54865 -34.78668 -34.09661 -33.66129 -30.49701 -29.06560 -27.97145 -26.90152 -25.75510 -23.62948 -22.48931 -21.63894 -21.14735 -19.55888 -18.73872 -18.43810 -17.74634 -16.94144 -16.68760 -16.31969 -15.99212 -15.61872 -14.95054 -14.83888 -14.58959 -14.20943 -14.04820 -13.65875 -13.62662 -13.44353 -13.34634 -13.16501 -12.96995 -12.95627 -12.67025 -12.49439 -12.16796 -12.06441 -11.81829 -11.57677 -11.51192 -10.94034 -10.69109 -10.62660 -10.51433 -9.31672 -8.81248 -8.21123 -6.36658 -0.25444 1.29071 1.32924 1.36011 1.46313 1.84300 2.30402 2.43352 2.59666 2.68488 3.06494 3.87029 3.89075 4.05576 4.07220 4.20505 4.23787 4.25680 4.50615 4.67654 4.71007 4.79919 4.87192 4.89075 4.94837 5.04093 5.06510 5.11943 5.13523 5.21023 5.27253 5.30663 5.45346 5.47648 5.51723 5.60907 5.75985 5.93883 6.10378 6.38599 6.72031 6.88679 7.29455 7.59388 8.84330 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.011866 B = 0.007011 C = 0.004990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2359.146530 B = 3992.851092 C = 5609.631859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.105 4.105 3 C -0.135 4.135 4 C 0.109 3.891 5 N -0.596 5.596 6 C 0.266 3.734 7 C -0.541 4.541 8 H 0.049 0.951 9 C 0.007 3.993 10 N -0.928 5.928 11 Si 0.965 3.035 12 H -0.261 1.261 13 H -0.281 1.281 14 H -0.275 1.275 15 C 0.512 3.488 16 O -0.580 6.580 17 C -0.208 4.208 18 C 0.001 3.999 19 C -0.014 4.014 20 C -0.193 4.193 21 C -0.230 4.230 22 C -0.046 4.046 23 O -0.164 6.164 24 H 0.049 0.951 25 H 0.066 0.934 26 H 0.025 0.975 27 H 0.068 0.932 28 H 0.076 0.924 29 H 0.065 0.935 30 H 0.056 0.944 31 H 0.068 0.932 32 H 0.103 0.897 33 H 0.032 0.968 34 H -0.013 1.013 35 H 0.266 0.734 36 H 0.174 0.826 37 H 0.205 0.795 38 H 0.175 0.825 39 H 0.170 0.830 40 H 0.212 0.788 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.905 5.514 -10.085 18.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.125 4.125 3 C -0.192 4.192 4 C -0.013 4.013 5 N -0.326 5.326 6 C 0.144 3.856 7 C -0.580 4.580 8 H 0.067 0.933 9 C -0.191 4.191 10 N -0.568 5.568 11 Si 0.789 3.211 12 H -0.186 1.186 13 H -0.206 1.206 14 H -0.200 1.200 15 C 0.305 3.695 16 O -0.463 6.463 17 C -0.228 4.228 18 C -0.018 4.018 19 C -0.064 4.064 20 C -0.212 4.212 21 C -0.249 4.249 22 C -0.116 4.116 23 O -0.058 6.058 24 H 0.068 0.932 25 H 0.085 0.915 26 H 0.044 0.956 27 H 0.086 0.914 28 H 0.095 0.905 29 H 0.084 0.916 30 H 0.075 0.925 31 H 0.086 0.914 32 H 0.120 0.880 33 H 0.050 0.950 34 H 0.005 0.995 35 H 0.075 0.925 36 H 0.191 0.809 37 H 0.222 0.778 38 H 0.193 0.807 39 H 0.188 0.812 40 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges 13.290 5.129 -10.081 17.452 hybrid contribution -0.805 -0.856 1.128 1.629 sum 12.485 4.273 -8.953 15.947 Atomic orbital electron populations 1.21890 0.96512 1.00413 1.01615 1.21529 0.95461 0.97926 0.97579 1.21722 1.01972 0.93114 1.02435 1.21883 1.01183 0.79610 0.98628 1.48128 1.20064 1.08496 1.55883 1.18726 0.81281 0.93930 0.91634 1.21748 0.94768 1.44615 0.96851 0.93291 1.25836 0.94711 0.95205 1.03385 1.70057 1.00613 1.47825 1.38337 0.85457 0.77757 0.78494 0.79353 1.18621 1.20601 1.20000 1.17921 0.86255 0.85704 0.79626 1.90800 1.76095 1.19095 1.60341 1.22616 0.94996 1.02758 1.02473 1.21250 1.00260 0.87397 0.92934 1.20358 0.82214 0.97333 1.06458 1.22516 1.02000 0.90971 1.05726 1.21965 0.93587 1.01645 1.07708 1.24700 1.01498 0.81001 1.04415 1.84280 1.30923 1.26666 1.63935 0.93184 0.91542 0.95561 0.91399 0.90520 0.91596 0.92469 0.91397 0.87950 0.95045 0.99480 0.92510 0.80883 0.77797 0.80727 0.81230 0.77148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.72 8.18 71.98 0.59 -4.13 16 2 C -0.11 -2.84 3.13 -10.80 -0.03 -2.87 16 3 C -0.13 -2.50 9.19 71.98 0.66 -1.83 16 4 C 0.11 3.52 4.63 86.38 0.40 3.92 16 5 N -0.60 -26.45 2.28 -836.84 -1.91 -28.36 16 6 C 0.27 14.91 4.23 85.63 0.36 15.27 16 7 C -0.54 -32.44 9.39 25.60 0.24 -32.20 16 8 H 0.05 2.92 7.81 -2.91 -0.02 2.90 16 9 C 0.01 0.43 5.46 84.65 0.46 0.90 16 10 N -0.93 -57.81 13.29 21.44 0.28 -57.53 16 11 Si 0.97 46.38 29.54 68.60 2.03 48.41 16 12 H -0.26 -11.70 7.11 99.48 0.71 -11.00 16 13 H -0.28 -13.17 7.11 99.48 0.71 -12.47 16 14 H -0.28 -13.14 7.11 99.48 0.71 -12.43 16 15 C 0.51 22.61 7.25 85.06 0.62 23.22 16 16 O -0.58 -31.24 11.98 19.16 0.23 -31.01 16 17 C -0.21 -6.29 9.15 22.48 0.21 -6.09 16 18 C 0.00 0.03 9.95 22.49 0.22 0.25 16 19 C -0.01 -0.46 5.32 23.03 0.12 -0.34 16 20 C -0.19 -5.61 10.90 22.71 0.25 -5.36 16 21 C -0.23 -6.72 10.87 22.07 0.24 -6.48 16 22 C -0.05 -1.56 12.06 67.11 0.81 -0.75 16 23 O -0.16 -6.57 7.81 17.48 0.14 -6.43 16 24 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 25 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 26 H 0.03 1.04 5.89 -2.38 -0.01 1.03 16 27 H 0.07 1.85 8.14 -2.38 -0.02 1.83 16 28 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 29 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 30 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 31 H 0.07 2.35 8.07 -2.39 -0.02 2.33 16 32 H 0.10 2.52 6.00 -2.39 -0.01 2.51 16 33 H 0.03 1.78 5.98 -2.39 -0.01 1.77 16 34 H -0.01 -0.85 7.42 -2.39 -0.02 -0.87 16 35 H 0.27 15.51 8.31 -92.70 -0.77 14.74 16 36 H 0.17 3.61 6.03 -2.91 -0.02 3.60 16 37 H 0.21 2.85 8.06 -2.91 -0.02 2.83 16 38 H 0.18 3.77 8.06 -2.91 -0.02 3.74 16 39 H 0.17 3.79 8.06 -2.91 -0.02 3.76 16 40 H 0.21 5.71 8.06 -2.91 -0.02 5.69 16 Total: -1.00 -81.83 332.52 6.94 -74.89 By element: Atomic # 1 Polarization: 15.50 SS G_CDS: 1.02 Total: 16.52 kcal Atomic # 6 Polarization: -21.65 SS G_CDS: 5.15 Total: -16.50 kcal Atomic # 7 Polarization: -84.26 SS G_CDS: -1.62 Total: -85.88 kcal Atomic # 8 Polarization: -37.80 SS G_CDS: 0.37 Total: -37.44 kcal Atomic # 14 Polarization: 46.38 SS G_CDS: 2.03 Total: 48.41 kcal Total: -81.83 6.94 -74.89 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000700872622.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.097 kcal (2) G-P(sol) polarization free energy of solvation -81.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.890 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds