Wall clock time and date at job start Mon Mar 30 2020 01:55:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.46938 * 2 1 4 4 C 1.52994 * 109.47385 * 120.00255 * 2 1 3 5 5 N 1.46507 * 109.47095 * 65.00239 * 4 2 1 6 6 C 1.46497 * 119.99516 * 269.99687 * 5 4 2 7 7 C 1.50693 * 109.47247 * 269.99837 * 6 5 4 8 8 H 1.07995 * 120.00299 * 0.02562 * 7 6 5 9 9 C 1.37884 * 119.99904 * 180.02562 * 7 6 5 10 10 N 1.31508 * 119.99881 * 359.97438 * 9 7 6 11 11 Si 1.86803 * 119.99926 * 180.02562 * 9 7 6 12 12 H 1.48507 * 109.46917 * 89.99823 * 11 9 7 13 13 H 1.48496 * 109.46775 * 209.99627 * 11 9 7 14 14 H 1.48494 * 109.47170 * 330.00148 * 11 9 7 15 15 C 1.34771 * 120.00005 * 89.99836 * 5 4 2 16 16 O 1.21775 * 120.00223 * 179.97438 * 15 5 4 17 17 C 1.41551 * 120.00071 * 0.02562 * 15 5 4 18 18 C 1.35628 * 119.99880 * 179.97438 * 17 15 5 19 19 C 1.41607 * 120.00192 * 179.97438 * 18 17 15 20 20 C 1.37946 * 126.10697 * 179.97438 * 19 18 17 21 21 C 1.40318 * 106.53073 * 179.76679 * 20 19 18 22 22 C 1.35157 * 107.20369 * 0.35473 * 21 20 19 23 23 O 1.34019 * 109.03356 * 359.63918 * 22 21 20 24 24 H 1.08999 * 109.47441 * 59.99694 * 1 2 3 25 25 H 1.09005 * 109.46642 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47245 * 299.99332 * 1 2 3 27 27 H 1.09002 * 109.46903 * 240.00993 * 2 1 3 28 28 H 1.09001 * 109.47108 * 180.02562 * 3 2 1 29 29 H 1.08999 * 109.47304 * 300.00390 * 3 2 1 30 30 H 1.08997 * 109.47124 * 60.00371 * 3 2 1 31 31 H 1.08995 * 109.47683 * 305.00070 * 4 2 1 32 32 H 1.09005 * 109.47339 * 184.99613 * 4 2 1 33 33 H 1.08998 * 109.47138 * 30.00659 * 6 5 4 34 34 H 1.09004 * 109.46421 * 150.00206 * 6 5 4 35 35 H 0.96997 * 120.00321 * 180.02562 * 10 9 7 36 36 H 1.08000 * 120.00503 * 359.97438 * 17 15 5 37 37 H 1.08004 * 120.00105 * 359.97438 * 18 17 15 38 38 H 1.08000 * 126.73550 * 0.02562 * 20 19 18 39 39 H 1.07993 * 126.40042 * 180.21834 * 21 20 19 40 40 H 1.08002 * 125.48574 * 179.91132 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 1.2491 5 7 1.6525 -2.1329 1.1904 6 6 0.3747 -2.5660 1.7612 7 6 0.5719 -2.9410 3.2073 8 1 1.5509 -2.8640 3.6565 9 6 -0.4978 -3.3824 3.9570 10 7 -1.6902 -3.4757 3.4102 11 14 -0.2536 -3.8466 5.7499 12 1 -0.4672 -2.6508 6.6043 13 1 -1.2275 -4.9031 6.1247 14 1 1.1279 -4.3546 5.9460 15 6 2.4716 -3.0330 0.6113 16 8 2.1498 -4.2065 0.5629 17 6 3.7065 -2.6146 0.0603 18 6 4.5310 -3.5205 -0.5220 19 6 5.7661 -3.1018 -1.0736 20 6 6.6964 -3.9114 -1.6917 21 6 7.7538 -3.0768 -2.0845 22 6 7.4392 -1.8220 -1.6932 23 8 6.2431 -1.8396 -1.0888 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5137 0.8900 27 1 1.8933 -0.5137 -0.8901 28 1 3.1300 1.4425 -0.0005 29 1 1.6766 1.9564 -0.8899 30 1 1.6767 1.9563 0.8900 31 1 1.6055 -0.2619 2.1369 32 1 3.1264 -0.6444 1.2950 33 1 -0.3483 -1.7533 1.6917 34 1 0.0045 -3.4299 1.2090 35 1 -2.4428 -3.7858 3.9376 36 1 3.9923 -1.5739 0.1036 37 1 4.2455 -4.5612 -0.5649 38 1 6.6232 -4.9777 -1.8470 39 1 8.6523 -3.3807 -2.6008 40 1 8.0510 -0.9453 -1.8470 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000700872625.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:31 Heat of formation + Delta-G solvation = -10.626935 kcal Electronic energy + Delta-G solvation = -21382.874160 eV Core-core repulsion = 18164.794999 eV Total energy + Delta-G solvation = -3218.079160 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.59885 -39.38733 -36.43257 -34.10418 -33.40825 -33.08402 -32.26256 -29.26953 -27.57351 -26.79553 -25.53803 -24.20560 -22.22996 -21.82131 -20.31562 -19.96126 -18.03066 -17.60629 -16.52254 -16.35119 -16.13842 -15.68527 -14.57013 -14.47583 -14.39976 -14.21480 -13.33071 -13.24464 -13.09407 -12.87005 -12.60027 -12.31087 -12.09675 -12.06588 -11.91880 -11.45806 -11.24421 -10.99999 -10.89099 -10.65673 -10.53410 -10.42295 -10.22145 -10.09544 -9.97977 -9.55187 -8.99389 -8.39187 -7.98951 -7.53740 -6.00949 -4.05153 0.60956 2.11640 2.77108 2.88632 3.32110 3.38781 3.43639 4.00209 4.08748 4.48059 4.69507 4.82386 4.89952 5.10789 5.20925 5.26392 5.32200 5.35806 5.53350 5.60088 5.66656 5.75582 5.87305 5.92080 6.03125 6.09545 6.13728 6.19835 6.22116 6.32223 6.35240 6.46282 6.61013 6.73077 7.00247 7.16798 7.48448 7.59624 7.95773 8.28090 8.45017 8.93207 9.11183 9.59440 11.06845 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.016986 B = 0.004699 C = 0.003998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1648.056584 B = 5957.703749 C = 7002.620004 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.114 4.114 3 C -0.143 4.143 4 C 0.113 3.887 5 N -0.586 5.586 6 C 0.241 3.759 7 C -0.525 4.525 8 H 0.057 0.943 9 C 0.061 3.939 10 N -0.895 5.895 11 Si 0.897 3.103 12 H -0.281 1.281 13 H -0.285 1.285 14 H -0.274 1.274 15 C 0.532 3.468 16 O -0.546 6.546 17 C -0.176 4.176 18 C -0.027 4.027 19 C 0.012 3.988 20 C -0.181 4.181 21 C -0.216 4.216 22 C -0.034 4.034 23 O -0.167 6.167 24 H 0.045 0.955 25 H 0.069 0.931 26 H 0.056 0.944 27 H 0.066 0.934 28 H 0.051 0.949 29 H 0.052 0.948 30 H 0.056 0.944 31 H 0.083 0.917 32 H 0.066 0.934 33 H 0.041 0.959 34 H 0.042 0.958 35 H 0.263 0.737 36 H 0.128 0.872 37 H 0.159 0.841 38 H 0.154 0.846 39 H 0.150 0.850 40 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.986 7.715 -10.601 19.912 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.134 4.134 3 C -0.201 4.201 4 C -0.011 4.011 5 N -0.316 5.316 6 C 0.122 3.878 7 C -0.564 4.564 8 H 0.075 0.925 9 C -0.141 4.141 10 N -0.534 5.534 11 Si 0.724 3.276 12 H -0.207 1.207 13 H -0.211 1.211 14 H -0.199 1.199 15 C 0.322 3.678 16 O -0.427 6.427 17 C -0.197 4.197 18 C -0.047 4.047 19 C -0.037 4.037 20 C -0.200 4.200 21 C -0.235 4.235 22 C -0.103 4.103 23 O -0.062 6.062 24 H 0.064 0.936 25 H 0.087 0.913 26 H 0.075 0.925 27 H 0.085 0.915 28 H 0.071 0.929 29 H 0.071 0.929 30 H 0.075 0.925 31 H 0.101 0.899 32 H 0.085 0.915 33 H 0.059 0.941 34 H 0.061 0.939 35 H 0.072 0.928 36 H 0.146 0.854 37 H 0.177 0.823 38 H 0.172 0.828 39 H 0.168 0.832 40 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges 14.412 7.308 -10.425 19.229 hybrid contribution 0.293 -0.230 0.943 1.014 sum 14.705 7.078 -9.481 18.874 Atomic orbital electron populations 1.21927 0.94590 1.03083 1.00947 1.21594 0.97127 0.95820 0.98839 1.21776 1.00544 0.96021 1.01747 1.21602 0.99173 0.82289 0.98049 1.48161 1.21735 1.06294 1.55387 1.19419 0.78670 0.96449 0.93260 1.21458 0.95093 1.44329 0.95508 0.92524 1.24917 0.95059 0.95442 0.98636 1.69926 0.99801 1.47127 1.36553 0.86519 0.78057 0.78178 0.84807 1.20686 1.21110 1.19923 1.16871 0.84777 0.86211 0.79960 1.90802 1.75677 1.17060 1.59120 1.22562 0.96110 1.00590 1.00408 1.20641 0.88499 1.00888 0.94674 1.20023 0.96912 0.81581 1.05210 1.22300 0.94229 1.00800 1.02703 1.21738 1.01689 0.93215 1.06888 1.24215 0.86223 1.00059 0.99798 1.84109 1.30685 1.30119 1.61299 0.93640 0.91253 0.92503 0.91512 0.92942 0.92851 0.92485 0.89851 0.91543 0.94075 0.93948 0.92774 0.85418 0.82334 0.82808 0.83234 0.78031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.31 8.18 37.16 0.30 -2.01 16 2 C -0.11 -1.64 3.13 -90.62 -0.28 -1.92 16 3 C -0.14 -1.62 9.19 37.16 0.34 -1.28 16 4 C 0.11 1.90 4.58 -4.04 -0.02 1.88 16 5 N -0.59 -12.59 2.28 -178.50 -0.41 -13.00 16 6 C 0.24 6.29 4.23 -5.20 -0.02 6.27 16 7 C -0.52 -15.01 9.39 -34.44 -0.32 -15.33 16 8 H 0.06 1.63 7.81 -52.49 -0.41 1.22 16 9 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 10 N -0.89 -26.64 13.29 55.43 0.74 -25.90 16 11 Si 0.90 22.07 29.54 -169.99 -5.02 17.05 16 12 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 13 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 14 H -0.27 -6.76 7.11 56.52 0.40 -6.36 16 15 C 0.53 11.47 7.44 -15.00 -0.11 11.36 16 16 O -0.55 -13.97 15.69 5.12 0.08 -13.89 16 17 C -0.18 -2.96 8.68 -39.25 -0.34 -3.30 16 18 C -0.03 -0.41 9.39 -39.23 -0.37 -0.78 16 19 C 0.01 0.16 6.84 -38.40 -0.26 -0.10 16 20 C -0.18 -2.05 10.90 -38.91 -0.42 -2.47 16 21 C -0.22 -2.05 10.87 -39.90 -0.43 -2.48 16 22 C -0.03 -0.32 12.06 29.64 0.36 0.04 16 23 O -0.17 -2.09 10.18 4.67 0.05 -2.04 16 24 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 25 H 0.07 1.29 5.89 -51.93 -0.31 0.98 16 26 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 27 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 28 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.08 1.45 8.07 -51.93 -0.42 1.03 16 32 H 0.07 0.98 6.08 -51.93 -0.32 0.66 16 33 H 0.04 1.07 5.98 -51.93 -0.31 0.75 16 34 H 0.04 1.26 7.42 -51.93 -0.39 0.87 16 35 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 36 H 0.13 1.88 5.75 -52.49 -0.30 1.58 16 37 H 0.16 2.42 7.46 -52.48 -0.39 2.03 16 38 H 0.15 1.45 8.06 -52.49 -0.42 1.03 16 39 H 0.15 1.02 8.06 -52.49 -0.42 0.59 16 40 H 0.20 1.03 8.06 -52.49 -0.42 0.61 16 LS Contribution 338.43 15.07 5.10 5.10 Total: -1.00 -33.37 338.43 -6.93 -40.30 By element: Atomic # 1 Polarization: 6.63 SS G_CDS: -5.78 Total: 0.85 kcal Atomic # 6 Polarization: -6.78 SS G_CDS: -1.68 Total: -8.46 kcal Atomic # 7 Polarization: -39.23 SS G_CDS: 0.33 Total: -38.90 kcal Atomic # 8 Polarization: -16.06 SS G_CDS: 0.13 Total: -15.93 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -33.37 -6.93 -40.30 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000700872625.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.671 kcal (2) G-P(sol) polarization free energy of solvation -33.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.926 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.298 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds