Wall clock time and date at job start Mon Mar 30 2020 01:55:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.46938 * 2 1 4 4 C 1.52994 * 109.47385 * 120.00255 * 2 1 3 5 5 N 1.46507 * 109.47095 * 65.00239 * 4 2 1 6 6 C 1.46497 * 119.99516 * 269.99687 * 5 4 2 7 7 C 1.50693 * 109.47247 * 269.99837 * 6 5 4 8 8 H 1.07995 * 120.00299 * 0.02562 * 7 6 5 9 9 C 1.37884 * 119.99904 * 180.02562 * 7 6 5 10 10 N 1.31508 * 119.99881 * 359.97438 * 9 7 6 11 11 Si 1.86803 * 119.99926 * 180.02562 * 9 7 6 12 12 H 1.48507 * 109.46917 * 89.99823 * 11 9 7 13 13 H 1.48496 * 109.46775 * 209.99627 * 11 9 7 14 14 H 1.48494 * 109.47170 * 330.00148 * 11 9 7 15 15 C 1.34771 * 120.00005 * 89.99836 * 5 4 2 16 16 O 1.21775 * 120.00223 * 179.97438 * 15 5 4 17 17 C 1.41551 * 120.00071 * 0.02562 * 15 5 4 18 18 C 1.35628 * 119.99880 * 179.97438 * 17 15 5 19 19 C 1.41607 * 120.00192 * 179.97438 * 18 17 15 20 20 C 1.37946 * 126.10697 * 179.97438 * 19 18 17 21 21 C 1.40318 * 106.53073 * 179.76679 * 20 19 18 22 22 C 1.35157 * 107.20369 * 0.35473 * 21 20 19 23 23 O 1.34019 * 109.03356 * 359.63918 * 22 21 20 24 24 H 1.08999 * 109.47441 * 59.99694 * 1 2 3 25 25 H 1.09005 * 109.46642 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47245 * 299.99332 * 1 2 3 27 27 H 1.09002 * 109.46903 * 240.00993 * 2 1 3 28 28 H 1.09001 * 109.47108 * 180.02562 * 3 2 1 29 29 H 1.08999 * 109.47304 * 300.00390 * 3 2 1 30 30 H 1.08997 * 109.47124 * 60.00371 * 3 2 1 31 31 H 1.08995 * 109.47683 * 305.00070 * 4 2 1 32 32 H 1.09005 * 109.47339 * 184.99613 * 4 2 1 33 33 H 1.08998 * 109.47138 * 30.00659 * 6 5 4 34 34 H 1.09004 * 109.46421 * 150.00206 * 6 5 4 35 35 H 0.96997 * 120.00321 * 180.02562 * 10 9 7 36 36 H 1.08000 * 120.00503 * 359.97438 * 17 15 5 37 37 H 1.08004 * 120.00105 * 359.97438 * 18 17 15 38 38 H 1.08000 * 126.73550 * 0.02562 * 20 19 18 39 39 H 1.07993 * 126.40042 * 180.21834 * 21 20 19 40 40 H 1.08002 * 125.48574 * 179.91132 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 1.2491 5 7 1.6525 -2.1329 1.1904 6 6 0.3747 -2.5660 1.7612 7 6 0.5719 -2.9410 3.2073 8 1 1.5509 -2.8640 3.6565 9 6 -0.4978 -3.3824 3.9570 10 7 -1.6902 -3.4757 3.4102 11 14 -0.2536 -3.8466 5.7499 12 1 -0.4672 -2.6508 6.6043 13 1 -1.2275 -4.9031 6.1247 14 1 1.1279 -4.3546 5.9460 15 6 2.4716 -3.0330 0.6113 16 8 2.1498 -4.2065 0.5629 17 6 3.7065 -2.6146 0.0603 18 6 4.5310 -3.5205 -0.5220 19 6 5.7661 -3.1018 -1.0736 20 6 6.6964 -3.9114 -1.6917 21 6 7.7538 -3.0768 -2.0845 22 6 7.4392 -1.8220 -1.6932 23 8 6.2431 -1.8396 -1.0888 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5137 0.8900 27 1 1.8933 -0.5137 -0.8901 28 1 3.1300 1.4425 -0.0005 29 1 1.6766 1.9564 -0.8899 30 1 1.6767 1.9563 0.8900 31 1 1.6055 -0.2619 2.1369 32 1 3.1264 -0.6444 1.2950 33 1 -0.3483 -1.7533 1.6917 34 1 0.0045 -3.4299 1.2090 35 1 -2.4428 -3.7858 3.9376 36 1 3.9923 -1.5739 0.1036 37 1 4.2455 -4.5612 -0.5649 38 1 6.6232 -4.9777 -1.8470 39 1 8.6523 -3.3807 -2.6008 40 1 8.0510 -0.9453 -1.8470 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000700872625.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:30 Heat of formation + Delta-G solvation = -30.792355 kcal Electronic energy + Delta-G solvation = -21383.748598 eV Core-core repulsion = 18164.794999 eV Total energy + Delta-G solvation = -3218.953598 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -43.46194 -41.01551 -37.90012 -35.58660 -34.97713 -34.14388 -33.93732 -30.65691 -29.15456 -27.98436 -26.97279 -25.81876 -23.73960 -22.75124 -21.54599 -21.05140 -19.49151 -18.79740 -18.58301 -17.66953 -17.23421 -17.02584 -16.37875 -16.02851 -15.70067 -15.51657 -14.78404 -14.71701 -14.21464 -13.88197 -13.74731 -13.67796 -13.50339 -13.40350 -13.17515 -12.97065 -12.95432 -12.66268 -12.49937 -12.17163 -12.11707 -11.84094 -11.68398 -11.56777 -11.51232 -10.81026 -10.73526 -10.61387 -9.44264 -8.88635 -8.20643 -6.35819 -0.52518 1.22354 1.35464 1.38566 1.49128 1.77164 2.05281 2.31294 2.49545 2.56916 3.07684 3.68166 3.88571 3.99541 4.03745 4.08629 4.15600 4.20296 4.32034 4.60164 4.65711 4.71399 4.81227 4.90222 4.91401 4.99068 5.04392 5.08449 5.11752 5.13207 5.19243 5.28632 5.34122 5.44577 5.49057 5.58094 5.60044 5.88747 6.09463 6.12985 6.70710 6.78926 7.28002 7.46301 8.85541 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.016986 B = 0.004699 C = 0.003998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1648.056584 B = 5957.703749 C = 7002.620004 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.106 4.106 3 C -0.135 4.135 4 C 0.110 3.890 5 N -0.592 5.592 6 C 0.260 3.740 7 C -0.545 4.545 8 H 0.049 0.951 9 C 0.009 3.991 10 N -0.927 5.927 11 Si 0.967 3.033 12 H -0.262 1.262 13 H -0.279 1.279 14 H -0.275 1.275 15 C 0.528 3.472 16 O -0.606 6.606 17 C -0.212 4.212 18 C 0.012 3.988 19 C -0.038 4.038 20 C -0.160 4.160 21 C -0.229 4.229 22 C -0.010 4.010 23 O -0.180 6.180 24 H 0.068 0.932 25 H 0.028 0.972 26 H 0.052 0.948 27 H 0.065 0.935 28 H 0.069 0.931 29 H 0.068 0.932 30 H 0.059 0.941 31 H 0.073 0.927 32 H 0.093 0.907 33 H 0.037 0.963 34 H -0.007 1.007 35 H 0.267 0.733 36 H 0.150 0.850 37 H 0.149 0.851 38 H 0.168 0.832 39 H 0.181 0.819 40 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.356 9.505 -11.150 23.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.126 4.126 3 C -0.192 4.192 4 C -0.013 4.013 5 N -0.320 5.320 6 C 0.139 3.861 7 C -0.584 4.584 8 H 0.068 0.932 9 C -0.190 4.190 10 N -0.567 5.567 11 Si 0.791 3.209 12 H -0.187 1.187 13 H -0.205 1.205 14 H -0.200 1.200 15 C 0.321 3.679 16 O -0.491 6.491 17 C -0.232 4.232 18 C -0.008 4.008 19 C -0.087 4.087 20 C -0.180 4.180 21 C -0.248 4.248 22 C -0.079 4.079 23 O -0.076 6.076 24 H 0.087 0.913 25 H 0.047 0.953 26 H 0.071 0.929 27 H 0.084 0.916 28 H 0.088 0.912 29 H 0.087 0.913 30 H 0.078 0.922 31 H 0.092 0.908 32 H 0.111 0.889 33 H 0.055 0.945 34 H 0.011 0.989 35 H 0.076 0.924 36 H 0.168 0.832 37 H 0.166 0.834 38 H 0.186 0.814 39 H 0.198 0.802 40 H 0.263 0.737 Dipole moment (debyes) X Y Z Total from point charges 17.794 9.150 -10.980 22.824 hybrid contribution -0.525 -0.823 0.929 1.348 sum 17.269 8.326 -10.052 21.647 Atomic orbital electron populations 1.21887 0.95933 1.00680 1.01853 1.21527 0.95885 0.97864 0.97323 1.21717 1.01632 0.93213 1.02668 1.21882 1.00800 0.79581 0.99021 1.48119 1.20243 1.08524 1.55164 1.18857 0.80959 0.94381 0.91876 1.21736 0.94935 1.44938 0.96751 0.93237 1.25832 0.94650 0.95074 1.03426 1.70047 1.00624 1.47599 1.38398 0.85431 0.77805 0.78476 0.79186 1.18725 1.20468 1.19983 1.17585 0.85906 0.85328 0.79061 1.90749 1.77216 1.19410 1.61761 1.22153 0.94766 1.02003 1.04324 1.20662 0.88646 1.00117 0.91364 1.19764 0.97302 0.82765 1.08830 1.22748 0.93756 1.01702 0.99764 1.22168 1.02302 0.92922 1.07374 1.25260 0.84683 1.01670 0.96259 1.84104 1.32005 1.29616 1.61888 0.91330 0.95253 0.92937 0.91622 0.91155 0.91332 0.92176 0.90828 0.88872 0.94469 0.98924 0.92407 0.83213 0.83361 0.81403 0.80205 0.73674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.69 8.18 71.98 0.59 -4.11 16 2 C -0.11 -3.01 3.13 -10.80 -0.03 -3.05 16 3 C -0.13 -2.70 9.19 71.98 0.66 -2.04 16 4 C 0.11 3.73 4.58 86.38 0.40 4.12 16 5 N -0.59 -26.97 2.28 -836.84 -1.91 -28.88 16 6 C 0.26 14.61 4.23 85.63 0.36 14.98 16 7 C -0.55 -32.66 9.39 25.60 0.24 -32.42 16 8 H 0.05 2.96 7.81 -2.91 -0.02 2.94 16 9 C 0.01 0.54 5.46 84.66 0.46 1.00 16 10 N -0.93 -57.26 13.29 21.45 0.28 -56.97 16 11 Si 0.97 46.14 29.54 68.60 2.03 48.16 16 12 H -0.26 -11.70 7.11 99.48 0.71 -10.99 16 13 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 14 H -0.27 -13.05 7.11 99.48 0.71 -12.34 16 15 C 0.53 24.22 7.44 85.06 0.63 24.85 16 16 O -0.61 -33.54 15.69 -4.59 -0.07 -33.61 16 17 C -0.21 -7.30 8.68 22.48 0.20 -7.10 16 18 C 0.01 0.38 9.39 22.50 0.21 0.59 16 19 C -0.04 -0.95 6.84 23.03 0.16 -0.79 16 20 C -0.16 -3.18 10.90 22.71 0.25 -2.93 16 21 C -0.23 -3.32 10.87 22.07 0.24 -3.08 16 22 C -0.01 -0.14 12.06 67.11 0.81 0.67 16 23 O -0.18 -3.98 10.18 -6.21 -0.06 -4.04 16 24 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 25 H 0.03 1.15 5.89 -2.38 -0.01 1.14 16 26 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 27 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 28 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 29 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 30 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 31 H 0.07 2.62 8.07 -2.39 -0.02 2.60 16 32 H 0.09 2.66 6.08 -2.38 -0.01 2.64 16 33 H 0.04 2.08 5.98 -2.39 -0.01 2.07 16 34 H -0.01 -0.48 7.42 -2.38 -0.02 -0.50 16 35 H 0.27 15.42 8.31 -92.71 -0.77 14.65 16 36 H 0.15 4.31 5.75 -2.91 -0.02 4.30 16 37 H 0.15 4.75 7.46 -2.91 -0.02 4.73 16 38 H 0.17 2.73 8.06 -2.91 -0.02 2.71 16 39 H 0.18 1.49 8.06 -2.91 -0.02 1.46 16 40 H 0.25 0.99 8.06 -2.91 -0.02 0.96 16 Total: -1.00 -78.14 338.43 6.46 -71.68 By element: Atomic # 1 Polarization: 11.95 SS G_CDS: 1.02 Total: 12.98 kcal Atomic # 6 Polarization: -14.48 SS G_CDS: 5.17 Total: -9.31 kcal Atomic # 7 Polarization: -84.23 SS G_CDS: -1.62 Total: -85.85 kcal Atomic # 8 Polarization: -37.52 SS G_CDS: -0.14 Total: -37.65 kcal Atomic # 14 Polarization: 46.14 SS G_CDS: 2.03 Total: 48.16 kcal Total: -78.14 6.46 -71.68 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000700872625.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.885 kcal (2) G-P(sol) polarization free energy of solvation -78.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.253 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.677 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds